Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c2539517a13e46d998c57f72f5a8f756', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642118400 Wrote: /builddir/build/SRPMS/python-staramr-0.7.2-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1c83821d166742318664062f8158a175', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642118400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mFxUMq + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf staramr-0.7.2 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/staramr-0.7.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd staramr-0.7.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.DucVsy + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-staramr-0.7.2-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9b9f649bc92547ab9dfcf72085e4a0ce', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642118400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.uoPrMJ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf staramr-0.7.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/staramr-0.7.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd staramr-0.7.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Q4fiih + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/staramr-0.7.2/staramr.dist-info' HOOK STDOUT: adding license file "LICENSE" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "NOTICE" (matched pattern "NOTICE*") Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement not satisfied: biopython (>=1.70) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement not satisfied: pandas (>=0.23.0) Handling GitPython (>=2.1.3) from wheel metadata: Requires-Dist Requirement not satisfied: GitPython (>=2.1.3) Handling xlsxwriter (>=1.0.2) from wheel metadata: Requires-Dist Requirement not satisfied: xlsxwriter (>=1.0.2) Handling numpy (>=1.12.1) from wheel metadata: Requires-Dist Requirement not satisfied: numpy (>=1.12.1) Handling green (>=2.13.0) from wheel metadata: Requires-Dist Requirement not satisfied: green (>=2.13.0) Handling coloredlogs (>=10.0) from wheel metadata: Requires-Dist Requirement not satisfied: coloredlogs (>=10.0) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-staramr-0.7.2-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '62936d67a03b4e9893c362abb810d2ce', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642118400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TntD8l + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf staramr-0.7.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/staramr-0.7.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd staramr-0.7.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.yesTME + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/staramr-0.7.2/staramr.dist-info' HOOK STDOUT: adding license file "LICENSE" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "NOTICE" (matched pattern "NOTICE*") Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement satisfied: biopython (>=1.70) (installed: biopython 1.79) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement satisfied: pandas (>=0.23.0) (installed: pandas 1.3.3) Handling GitPython (>=2.1.3) from wheel metadata: Requires-Dist Requirement satisfied: GitPython (>=2.1.3) (installed: GitPython 3.1.14) Handling xlsxwriter (>=1.0.2) from wheel metadata: Requires-Dist Requirement satisfied: xlsxwriter (>=1.0.2) (installed: xlsxwriter 3.0.2) Handling numpy (>=1.12.1) from wheel metadata: Requires-Dist Requirement satisfied: numpy (>=1.12.1) (installed: numpy 1.22.0) Handling green (>=2.13.0) from wheel metadata: Requires-Dist Requirement satisfied: green (>=2.13.0) (installed: green 3.3.0) Handling coloredlogs (>=10.0) from wheel metadata: Requires-Dist Requirement satisfied: coloredlogs (>=10.0) (installed: coloredlogs 15.0.1) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-staramr-0.7.2-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8105fcc7cf7d4901a258a2368f464bed', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642282535.178418/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.g9xckj3u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-staramr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642118400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FeRTK4 + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv staramr.dist-info/ removed 'staramr.dist-info/LICENSE' removed 'staramr.dist-info/NOTICE' removed 'staramr.dist-info/METADATA' removed 'staramr.dist-info/top_level.txt' removed directory 'staramr.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating staramr.egg-info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing staramr.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to staramr.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to staramr.egg-info/requires.txt HOOK STDOUT: writing top-level names to staramr.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'staramr.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/staramr-0.7.2/staramr.dist-info' HOOK STDOUT: adding license file "LICENSE" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "NOTICE" (matched pattern "NOTICE*") Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement satisfied: biopython (>=1.70) (installed: biopython 1.79) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement satisfied: pandas (>=0.23.0) (installed: pandas 1.3.3) Handling GitPython (>=2.1.3) from wheel metadata: Requires-Dist Requirement satisfied: GitPython (>=2.1.3) (installed: GitPython 3.1.14) Handling xlsxwriter (>=1.0.2) from wheel metadata: Requires-Dist Requirement satisfied: xlsxwriter (>=1.0.2) (installed: xlsxwriter 3.0.2) Handling numpy (>=1.12.1) from wheel metadata: Requires-Dist Requirement satisfied: numpy (>=1.12.1) (installed: numpy 1.22.0) Handling green (>=2.13.0) from wheel metadata: Requires-Dist Requirement satisfied: green (>=2.13.0) (installed: green 3.3.0) Handling coloredlogs (>=10.0) from wheel metadata: Requires-Dist Requirement satisfied: coloredlogs (>=10.0) (installed: coloredlogs 15.0.1) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.t8UgWm + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + mkdir -p /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1' + TMPDIR=/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/staramr-0.7.2/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/staramr-0.7.2 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/tmp590bhxsu running dist_info creating /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info writing /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'NOTICE' writing manifest file '/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-modern-metadata-hiak2bhe/staramr.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "NOTICE" (matched pattern "NOTICE*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: staramr Building wheel for staramr (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/tmp5jils2sr running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/staramr copying staramr/__init__.py -> build/lib/staramr copying staramr/Utils.py -> build/lib/staramr copying staramr/SubCommand.py -> build/lib/staramr creating build/lib/staramr/tests copying staramr/tests/__init__.py -> build/lib/staramr/tests creating build/lib/staramr/subcommand copying staramr/subcommand/__init__.py -> build/lib/staramr/subcommand copying staramr/subcommand/Search.py -> build/lib/staramr/subcommand copying staramr/subcommand/Database.py -> build/lib/staramr/subcommand creating build/lib/staramr/results copying staramr/results/__init__.py -> build/lib/staramr/results copying staramr/results/QualityModule.py -> build/lib/staramr/results copying staramr/results/AMRDetectionSummaryResistance.py -> build/lib/staramr/results copying staramr/results/AMRDetectionSummary.py -> build/lib/staramr/results creating build/lib/staramr/exceptions copying staramr/exceptions/__init__.py -> build/lib/staramr/exceptions copying staramr/exceptions/InvalidPositionException.py -> build/lib/staramr/exceptions copying staramr/exceptions/DatabaseNotFoundException.py -> build/lib/staramr/exceptions copying staramr/exceptions/DatabaseErrorException.py -> build/lib/staramr/exceptions copying staramr/exceptions/CommandParseException.py -> build/lib/staramr/exceptions copying staramr/exceptions/BlastProcessError.py -> build/lib/staramr/exceptions creating build/lib/staramr/detection copying staramr/detection/__init__.py -> build/lib/staramr/detection copying staramr/detection/AMRDetectionResistance.py -> build/lib/staramr/detection copying staramr/detection/AMRDetectionFactory.py -> build/lib/staramr/detection copying staramr/detection/AMRDetection.py -> build/lib/staramr/detection creating build/lib/staramr/databases copying staramr/databases/__init__.py -> build/lib/staramr/databases copying staramr/databases/BlastDatabaseRepository.py -> build/lib/staramr/databases copying staramr/databases/BlastDatabaseRepositories.py -> build/lib/staramr/databases copying staramr/databases/AMRDatabasesManager.py -> build/lib/staramr/databases creating build/lib/staramr/blast copying staramr/blast/__init__.py -> build/lib/staramr/blast copying staramr/blast/JobHandler.py -> build/lib/staramr/blast copying staramr/blast/AbstractBlastDatabase.py -> build/lib/staramr/blast creating build/lib/staramr/tests/unit copying staramr/tests/unit/__init__.py -> build/lib/staramr/tests/unit creating build/lib/staramr/tests/integration copying staramr/tests/integration/__init__.py -> build/lib/staramr/tests/integration creating build/lib/staramr/tests/unit/results copying staramr/tests/unit/results/test_QualityModule.py -> build/lib/staramr/tests/unit/results copying staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/lib/staramr/tests/unit/results copying staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/lib/staramr/tests/unit/results copying staramr/tests/unit/results/__init__.py -> build/lib/staramr/tests/unit/results creating build/lib/staramr/tests/unit/blast copying staramr/tests/unit/blast/__init__.py -> build/lib/staramr/tests/unit/blast creating build/lib/staramr/tests/unit/blast/results copying staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/lib/staramr/tests/unit/blast/results copying staramr/tests/unit/blast/results/__init__.py -> build/lib/staramr/tests/unit/blast/results creating build/lib/staramr/tests/unit/blast/pointfinder copying staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/lib/staramr/tests/unit/blast/pointfinder copying staramr/tests/unit/blast/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/pointfinder creating build/lib/staramr/tests/unit/blast/results/pointfinder copying staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder copying staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder copying staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder creating build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide copying staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide copying staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide creating build/lib/staramr/tests/unit/blast/results/pointfinder/codon copying staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon copying staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon creating build/lib/staramr/tests/integration/detection copying staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/lib/staramr/tests/integration/detection copying staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/lib/staramr/tests/integration/detection copying staramr/tests/integration/detection/test_AMRDetection.py -> build/lib/staramr/tests/integration/detection copying staramr/tests/integration/detection/__init__.py -> build/lib/staramr/tests/integration/detection creating build/lib/staramr/tests/integration/databases copying staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/lib/staramr/tests/integration/databases copying staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/lib/staramr/tests/integration/databases copying staramr/tests/integration/databases/__init__.py -> build/lib/staramr/tests/integration/databases creating build/lib/staramr/databases/resistance copying staramr/databases/resistance/__init__.py -> build/lib/staramr/databases/resistance copying staramr/databases/resistance/ARGDrugTable.py -> build/lib/staramr/databases/resistance creating build/lib/staramr/databases/exclude copying staramr/databases/exclude/__init__.py -> build/lib/staramr/databases/exclude copying staramr/databases/exclude/ExcludeGenesList.py -> build/lib/staramr/databases/exclude creating build/lib/staramr/databases/resistance/resfinder copying staramr/databases/resistance/resfinder/__init__.py -> build/lib/staramr/databases/resistance/resfinder copying staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/lib/staramr/databases/resistance/resfinder creating build/lib/staramr/databases/resistance/pointfinder copying staramr/databases/resistance/pointfinder/__init__.py -> build/lib/staramr/databases/resistance/pointfinder copying staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/lib/staramr/databases/resistance/pointfinder creating build/lib/staramr/blast/results copying staramr/blast/results/__init__.py -> build/lib/staramr/blast/results copying staramr/blast/results/BlastResultsParser.py -> build/lib/staramr/blast/results copying staramr/blast/results/BlastHitPartitions.py -> build/lib/staramr/blast/results copying staramr/blast/results/AMRHitHSP.py -> build/lib/staramr/blast/results creating build/lib/staramr/blast/resfinder copying staramr/blast/resfinder/__init__.py -> build/lib/staramr/blast/resfinder copying staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/lib/staramr/blast/resfinder creating build/lib/staramr/blast/pointfinder copying staramr/blast/pointfinder/__init__.py -> build/lib/staramr/blast/pointfinder copying staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/lib/staramr/blast/pointfinder copying staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/lib/staramr/blast/pointfinder creating build/lib/staramr/blast/plasmidfinder copying staramr/blast/plasmidfinder/__init__.py -> build/lib/staramr/blast/plasmidfinder copying staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/lib/staramr/blast/plasmidfinder creating build/lib/staramr/blast/results/resfinder copying staramr/blast/results/resfinder/__init__.py -> build/lib/staramr/blast/results/resfinder copying staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/lib/staramr/blast/results/resfinder copying staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/lib/staramr/blast/results/resfinder copying staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/lib/staramr/blast/results/resfinder creating build/lib/staramr/blast/results/pointfinder copying staramr/blast/results/pointfinder/__init__.py -> build/lib/staramr/blast/results/pointfinder copying staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/lib/staramr/blast/results/pointfinder copying staramr/blast/results/pointfinder/MutationPosition.py -> build/lib/staramr/blast/results/pointfinder copying staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/lib/staramr/blast/results/pointfinder copying staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/lib/staramr/blast/results/pointfinder creating build/lib/staramr/blast/results/plasmidfinder copying staramr/blast/results/plasmidfinder/__init__.py -> build/lib/staramr/blast/results/plasmidfinder copying staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/lib/staramr/blast/results/plasmidfinder copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/lib/staramr/blast/results/plasmidfinder copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/lib/staramr/blast/results/plasmidfinder creating build/lib/staramr/blast/results/pointfinder/nucleotide copying staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/blast/results/pointfinder/nucleotide copying staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/lib/staramr/blast/results/pointfinder/nucleotide copying staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/nucleotide creating build/lib/staramr/blast/results/pointfinder/codon copying staramr/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/blast/results/pointfinder/codon copying staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/codon running egg_info creating staramr.egg-info writing staramr.egg-info/PKG-INFO writing dependency_links to staramr.egg-info/dependency_links.txt writing requirements to staramr.egg-info/requires.txt writing top-level names to staramr.egg-info/top_level.txt writing manifest file 'staramr.egg-info/SOURCES.txt' reading manifest file 'staramr.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'NOTICE' writing manifest file 'staramr.egg-info/SOURCES.txt' creating build/lib/staramr/databases/data creating build/lib/staramr/databases/data/dist copying staramr/databases/data/dist/plasmidfinder-info.ini -> build/lib/staramr/databases/data/dist copying staramr/databases/data/dist/pointfinder-info.ini -> build/lib/staramr/databases/data/dist copying staramr/databases/data/dist/resfinder-info.ini -> build/lib/staramr/databases/data/dist creating build/lib/staramr/databases/data/dist/plasmidfinder copying staramr/databases/data/dist/plasmidfinder/.gitignore -> build/lib/staramr/databases/data/dist/plasmidfinder copying staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/plasmidfinder copying staramr/databases/data/dist/plasmidfinder/config -> build/lib/staramr/databases/data/dist/plasmidfinder copying staramr/databases/data/dist/plasmidfinder/enterobacteriaceae.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder copying staramr/databases/data/dist/plasmidfinder/gram_positive.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder creating build/lib/staramr/databases/data/dist/pointfinder copying staramr/databases/data/dist/pointfinder/.gitignore -> build/lib/staramr/databases/data/dist/pointfinder copying staramr/databases/data/dist/pointfinder/config -> build/lib/staramr/databases/data/dist/pointfinder creating build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/L22.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter copying staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter creating build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/16S_rrsB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/16S_rrsC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/16S_rrsH.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/ampC_promoter_size_53bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/folP.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/e.coli copying staramr/databases/data/dist/pointfinder/e.coli/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/e.coli creating build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/16S_rRNA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/23S_rRNA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_pro.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_locus.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mtr_locus_promoter_size_76bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/mutation_notes.txt -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/penA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/pilQ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/ponA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/porB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae copying staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsJ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae creating build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella copying staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella creating build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/Rv0678.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/ahpC_promoter_size_180bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/eis_promoter_size_119bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/embA_promoter_size_115bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/embB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/embC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/embR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/ethA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/ethR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/fabG1_promoter_size_223bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/folC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/inhA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/kasA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/katG_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/panD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/pncA_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/ribD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rplC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rpoC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rpsA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/rrs.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/thyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis copying staramr/databases/data/dist/pointfinder/tuberculosis/tlyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/tuberculosis creating build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/README.md -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/colistin.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/config -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/macrolide.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/notes.txt -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/phenicol.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/quinolone.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/lib/staramr/databases/data/dist/resfinder copying staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/lib/staramr/databases/data/dist/resfinder creating build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-Calculation.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data copying staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data creating build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/23S-A2075G.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-A67P.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-A67T.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-A70T.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-S83R.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/gyrA-S97N.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/non-match.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/pbp5-ins-466.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-aminoglycoside.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-detailed-summary.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-mlst-summary.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-plasmids-seq.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/lib/staramr/tests/integration/data copying staramr/tests/integration/data/test-seq-id.fsa -> build/lib/staramr/tests/integration/data creating build/lib/staramr/tests/integration/data/gene-drug-tables copying staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables copying staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables creating build/lib/staramr/databases/resistance/data copying staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/lib/staramr/databases/resistance/data copying staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/lib/staramr/databases/resistance/data copying staramr/databases/resistance/data/info.ini -> build/lib/staramr/databases/resistance/data creating build/lib/staramr/databases/exclude/data copying staramr/databases/exclude/data/genes_to_exclude.tsv -> build/lib/staramr/databases/exclude/data running build_scripts creating build/scripts-3.10 copying and adjusting bin/staramr -> build/scripts-3.10 changing mode of build/scripts-3.10/staramr from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/staramr creating build/bdist.linux-x86_64/wheel/staramr/blast creating build/bdist.linux-x86_64/wheel/staramr/blast/plasmidfinder copying build/lib/staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/bdist.linux-x86_64/wheel/staramr/blast/plasmidfinder copying build/lib/staramr/blast/plasmidfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/plasmidfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/pointfinder copying build/lib/staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/bdist.linux-x86_64/wheel/staramr/blast/pointfinder copying build/lib/staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/bdist.linux-x86_64/wheel/staramr/blast/pointfinder copying build/lib/staramr/blast/pointfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/resfinder copying build/lib/staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/bdist.linux-x86_64/wheel/staramr/blast/resfinder copying build/lib/staramr/blast/resfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/resfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/results creating build/bdist.linux-x86_64/wheel/staramr/blast/results/plasmidfinder copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/plasmidfinder copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/plasmidfinder copying build/lib/staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/plasmidfinder copying build/lib/staramr/blast/results/plasmidfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/plasmidfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/codon copying build/lib/staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/codon copying build/lib/staramr/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/codon creating build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/nucleotide copying build/lib/staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/nucleotide copying build/lib/staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/nucleotide copying build/lib/staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder/nucleotide copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder copying build/lib/staramr/blast/results/pointfinder/MutationPosition.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder copying build/lib/staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder copying build/lib/staramr/blast/results/pointfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/blast/results/resfinder copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/resfinder copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/resfinder copying build/lib/staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/resfinder copying build/lib/staramr/blast/results/resfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results/resfinder copying build/lib/staramr/blast/results/AMRHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results copying build/lib/staramr/blast/results/BlastHitPartitions.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results copying build/lib/staramr/blast/results/BlastResultsParser.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results copying build/lib/staramr/blast/results/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast/results copying build/lib/staramr/blast/AbstractBlastDatabase.py -> build/bdist.linux-x86_64/wheel/staramr/blast copying build/lib/staramr/blast/JobHandler.py -> build/bdist.linux-x86_64/wheel/staramr/blast copying build/lib/staramr/blast/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/blast creating build/bdist.linux-x86_64/wheel/staramr/databases creating build/bdist.linux-x86_64/wheel/staramr/databases/data creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/quinolone.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/phenicol.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/notes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/macrolide.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/config -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/colistin.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder copying build/lib/staramr/databases/data/dist/resfinder/README.md -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/resfinder creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/tlyA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/thyA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rrs.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rpsL.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rpsA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rpoC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rpoB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/rplC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/ribD.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/resistens-overview.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/pncA_promoter_size_107bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/panD.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/katG_promoter_size_107bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/kasA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/inhA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/gyrB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/gyrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/folC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/fabG1_promoter_size_223bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/ethR.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/ethA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/embR.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/embC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/embB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/embA_promoter_size_115bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/eis_promoter_size_119bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/ahpC_promoter_size_180bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/Rv0678.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis copying build/lib/staramr/databases/data/dist/pointfinder/tuberculosis/RNA_genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/tuberculosis creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/23S.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/salmonella creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsJ.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsE.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/resistens-overview.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/porB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/ponA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/pilQ.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/penA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/parC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mutation_notes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mtr_locus_promoter_size_76bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_locus.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_pro.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/gyrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/RNA_genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/23S_rRNA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae copying build/lib/staramr/databases/data/dist/pointfinder/gonorrhoeae/16S_rRNA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/gonorrhoeae creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/rpoB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/resistens-overview.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/pmrB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/pmrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/parE.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/parC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/gyrB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/gyrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/folP.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/ampC_promoter_size_53bp.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/RNA_genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/23S.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/16S_rrsH.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/16S_rrsC.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli copying build/lib/staramr/databases/data/dist/pointfinder/e.coli/16S_rrsB.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/e.coli creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/L22.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder/campylobacter copying build/lib/staramr/databases/data/dist/pointfinder/config -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder copying build/lib/staramr/databases/data/dist/pointfinder/.gitignore -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/plasmidfinder/gram_positive.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/plasmidfinder/enterobacteriaceae.fsa -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/plasmidfinder/config -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/plasmidfinder/.gitignore -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist/plasmidfinder copying build/lib/staramr/databases/data/dist/resfinder-info.ini -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist copying build/lib/staramr/databases/data/dist/pointfinder-info.ini -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist copying build/lib/staramr/databases/data/dist/plasmidfinder-info.ini -> build/bdist.linux-x86_64/wheel/staramr/databases/data/dist creating build/bdist.linux-x86_64/wheel/staramr/databases/exclude creating build/bdist.linux-x86_64/wheel/staramr/databases/exclude/data copying build/lib/staramr/databases/exclude/data/genes_to_exclude.tsv -> build/bdist.linux-x86_64/wheel/staramr/databases/exclude/data copying build/lib/staramr/databases/exclude/ExcludeGenesList.py -> build/bdist.linux-x86_64/wheel/staramr/databases/exclude copying build/lib/staramr/databases/exclude/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/databases/exclude creating build/bdist.linux-x86_64/wheel/staramr/databases/resistance creating build/bdist.linux-x86_64/wheel/staramr/databases/resistance/data copying build/lib/staramr/databases/resistance/data/info.ini -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/data copying build/lib/staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/data copying build/lib/staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/data creating build/bdist.linux-x86_64/wheel/staramr/databases/resistance/pointfinder copying build/lib/staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/pointfinder copying build/lib/staramr/databases/resistance/pointfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/databases/resistance/resfinder copying build/lib/staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/resfinder copying build/lib/staramr/databases/resistance/resfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance/resfinder copying build/lib/staramr/databases/resistance/ARGDrugTable.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance copying build/lib/staramr/databases/resistance/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/databases/resistance copying build/lib/staramr/databases/AMRDatabasesManager.py -> build/bdist.linux-x86_64/wheel/staramr/databases copying build/lib/staramr/databases/BlastDatabaseRepositories.py -> build/bdist.linux-x86_64/wheel/staramr/databases copying build/lib/staramr/databases/BlastDatabaseRepository.py -> build/bdist.linux-x86_64/wheel/staramr/databases copying build/lib/staramr/databases/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/databases creating build/bdist.linux-x86_64/wheel/staramr/detection copying build/lib/staramr/detection/AMRDetection.py -> build/bdist.linux-x86_64/wheel/staramr/detection copying build/lib/staramr/detection/AMRDetectionFactory.py -> build/bdist.linux-x86_64/wheel/staramr/detection copying build/lib/staramr/detection/AMRDetectionResistance.py -> build/bdist.linux-x86_64/wheel/staramr/detection copying build/lib/staramr/detection/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/detection creating build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/BlastProcessError.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/CommandParseException.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/DatabaseErrorException.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/DatabaseNotFoundException.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/InvalidPositionException.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions copying build/lib/staramr/exceptions/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/exceptions creating build/bdist.linux-x86_64/wheel/staramr/results copying build/lib/staramr/results/AMRDetectionSummary.py -> build/bdist.linux-x86_64/wheel/staramr/results copying build/lib/staramr/results/AMRDetectionSummaryResistance.py -> build/bdist.linux-x86_64/wheel/staramr/results copying build/lib/staramr/results/QualityModule.py -> build/bdist.linux-x86_64/wheel/staramr/results copying build/lib/staramr/results/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/results creating build/bdist.linux-x86_64/wheel/staramr/subcommand copying build/lib/staramr/subcommand/Database.py -> build/bdist.linux-x86_64/wheel/staramr/subcommand copying build/lib/staramr/subcommand/Search.py -> build/bdist.linux-x86_64/wheel/staramr/subcommand copying build/lib/staramr/subcommand/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/subcommand creating build/bdist.linux-x86_64/wheel/staramr/tests creating build/bdist.linux-x86_64/wheel/staramr/tests/integration creating build/bdist.linux-x86_64/wheel/staramr/tests/integration/data creating build/bdist.linux-x86_64/wheel/staramr/tests/integration/data/gene-drug-tables copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data/gene-drug-tables copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data/gene-drug-tables copying build/lib/staramr/tests/integration/data/test-seq-id.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-plasmids-seq.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-mlst-summary.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-detailed-summary.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/test-aminoglycoside.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/pbp5-ins-466.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/non-match.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-S97N.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-S83R.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-A70T.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-A67T.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-A67P.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/23S-A2075G.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data copying build/lib/staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/data creating build/bdist.linux-x86_64/wheel/staramr/tests/integration/databases copying build/lib/staramr/tests/integration/databases/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/databases copying build/lib/staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/databases copying build/lib/staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/databases creating build/bdist.linux-x86_64/wheel/staramr/tests/integration/detection copying build/lib/staramr/tests/integration/detection/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/detection copying build/lib/staramr/tests/integration/detection/test_AMRDetection.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/detection copying build/lib/staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/detection copying build/lib/staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration/detection copying build/lib/staramr/tests/integration/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/integration creating build/bdist.linux-x86_64/wheel/staramr/tests/unit creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-N50-Calculation.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/data creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/pointfinder copying build/lib/staramr/tests/unit/blast/pointfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/pointfinder copying build/lib/staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/codon copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/codon copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/codon creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide copying build/lib/staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results/pointfinder copying build/lib/staramr/tests/unit/blast/results/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results copying build/lib/staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast/results copying build/lib/staramr/tests/unit/blast/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/blast creating build/bdist.linux-x86_64/wheel/staramr/tests/unit/results copying build/lib/staramr/tests/unit/results/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/results copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/results copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/results copying build/lib/staramr/tests/unit/results/test_QualityModule.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit/results copying build/lib/staramr/tests/unit/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests/unit copying build/lib/staramr/tests/__init__.py -> build/bdist.linux-x86_64/wheel/staramr/tests copying build/lib/staramr/SubCommand.py -> build/bdist.linux-x86_64/wheel/staramr copying build/lib/staramr/Utils.py -> build/bdist.linux-x86_64/wheel/staramr copying build/lib/staramr/__init__.py -> build/bdist.linux-x86_64/wheel/staramr running install_egg_info Copying staramr.egg-info to build/bdist.linux-x86_64/wheel/staramr-0.7.2-py3.10.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/staramr-0.7.2.data creating build/bdist.linux-x86_64/wheel/staramr-0.7.2.data/scripts copying build/scripts-3.10/staramr -> build/bdist.linux-x86_64/wheel/staramr-0.7.2.data/scripts changing mode of build/bdist.linux-x86_64/wheel/staramr-0.7.2.data/scripts/staramr to 755 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "NOTICE" (matched pattern "NOTICE*") creating build/bdist.linux-x86_64/wheel/staramr-0.7.2.dist-info/WHEEL creating '/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir/pip-wheel-vbwkdgn2/tmpy8lx6w1q/staramr-0.7.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'staramr/SubCommand.py' adding 'staramr/Utils.py' adding 'staramr/__init__.py' adding 'staramr/blast/AbstractBlastDatabase.py' adding 'staramr/blast/JobHandler.py' adding 'staramr/blast/__init__.py' adding 'staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py' adding 'staramr/blast/plasmidfinder/__init__.py' adding 'staramr/blast/pointfinder/PointfinderBlastDatabase.py' adding 'staramr/blast/pointfinder/PointfinderDatabaseInfo.py' adding 'staramr/blast/pointfinder/__init__.py' adding 'staramr/blast/resfinder/ResfinderBlastDatabase.py' adding 'staramr/blast/resfinder/__init__.py' adding 'staramr/blast/results/AMRHitHSP.py' adding 'staramr/blast/results/BlastHitPartitions.py' adding 'staramr/blast/results/BlastResultsParser.py' adding 'staramr/blast/results/__init__.py' adding 'staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py' adding 'staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py' adding 'staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py' adding 'staramr/blast/results/plasmidfinder/__init__.py' adding 'staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py' adding 'staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py' adding 'staramr/blast/results/pointfinder/MutationPosition.py' adding 'staramr/blast/results/pointfinder/PointfinderHitHSP.py' adding 'staramr/blast/results/pointfinder/__init__.py' adding 'staramr/blast/results/pointfinder/codon/CodonMutationPosition.py' adding 'staramr/blast/results/pointfinder/codon/__init__.py' adding 'staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py' adding 'staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py' adding 'staramr/blast/results/pointfinder/nucleotide/__init__.py' adding 'staramr/blast/results/resfinder/BlastResultsParserResfinder.py' adding 'staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py' adding 'staramr/blast/results/resfinder/ResfinderHitHSP.py' adding 'staramr/blast/results/resfinder/__init__.py' adding 'staramr/databases/AMRDatabasesManager.py' adding 'staramr/databases/BlastDatabaseRepositories.py' adding 'staramr/databases/BlastDatabaseRepository.py' adding 'staramr/databases/__init__.py' adding 'staramr/databases/data/dist/plasmidfinder-info.ini' adding 'staramr/databases/data/dist/pointfinder-info.ini' adding 'staramr/databases/data/dist/resfinder-info.ini' adding 'staramr/databases/data/dist/plasmidfinder/.gitignore' adding 'staramr/databases/data/dist/plasmidfinder/INSTALL.py' adding 'staramr/databases/data/dist/plasmidfinder/config' adding 'staramr/databases/data/dist/plasmidfinder/enterobacteriaceae.fsa' adding 'staramr/databases/data/dist/plasmidfinder/gram_positive.fsa' adding 'staramr/databases/data/dist/pointfinder/.gitignore' adding 'staramr/databases/data/dist/pointfinder/config' adding 'staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa' adding 'staramr/databases/data/dist/pointfinder/campylobacter/L22.fsa' adding 'staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt' adding 'staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa' adding 'staramr/databases/data/dist/pointfinder/campylobacter/genes.txt' adding 'staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa' adding 'staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt' adding 'staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/16S_rrsB.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/16S_rrsC.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/16S_rrsH.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/23S.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/RNA_genes.txt' adding 'staramr/databases/data/dist/pointfinder/e.coli/ampC_promoter_size_53bp.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/folP.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/genes.txt' adding 'staramr/databases/data/dist/pointfinder/e.coli/gyrA.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/gyrB.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/parC.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/parE.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/pmrA.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/pmrB.fsa' adding 'staramr/databases/data/dist/pointfinder/e.coli/resistens-overview.txt' adding 'staramr/databases/data/dist/pointfinder/e.coli/rpoB.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/16S_rRNA.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/23S_rRNA.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/RNA_genes.txt' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/genes.txt' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/gyrA.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_pro.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/macAB_promoter_size_225bp.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrC_promoter_size_174bp.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_locus.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mtrR_promoter_size_66bp.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mtr_locus_promoter_size_76bp.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/mutation_notes.txt' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/parC.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/penA.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/pilQ.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/ponA.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/porB.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/resistens-overview.txt' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsE.fsa' adding 'staramr/databases/data/dist/pointfinder/gonorrhoeae/rpsJ.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/23S.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt' adding 'staramr/databases/data/dist/pointfinder/salmonella/genes.txt' adding 'staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/parC.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/parE.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa' adding 'staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/RNA_genes.txt' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/Rv0678.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/ahpC_promoter_size_180bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/eis_promoter_size_119bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/embA_promoter_size_115bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/embB.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/embC.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/embR.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/ethA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/ethR.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/fabG1_promoter_size_223bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/folC.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/genes.txt' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/gyrA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/gyrB.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/inhA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/kasA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/katG_promoter_size_107bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/panD.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/pncA_promoter_size_107bp.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/resistens-overview.txt' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/ribD.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rplC.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rpoB.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rpoC.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rpsA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rpsL.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/rrs.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/thyA.fsa' adding 'staramr/databases/data/dist/pointfinder/tuberculosis/tlyA.fsa' adding 'staramr/databases/data/dist/resfinder/README.md' adding 'staramr/databases/data/dist/resfinder/aminoglycoside.fsa' adding 'staramr/databases/data/dist/resfinder/beta-lactam.fsa' adding 'staramr/databases/data/dist/resfinder/colistin.fsa' adding 'staramr/databases/data/dist/resfinder/config' adding 'staramr/databases/data/dist/resfinder/fosfomycin.fsa' adding 'staramr/databases/data/dist/resfinder/fusidicacid.fsa' adding 'staramr/databases/data/dist/resfinder/glycopeptide.fsa' adding 'staramr/databases/data/dist/resfinder/macrolide.fsa' adding 'staramr/databases/data/dist/resfinder/nitroimidazole.fsa' adding 'staramr/databases/data/dist/resfinder/notes.txt' adding 'staramr/databases/data/dist/resfinder/oxazolidinone.fsa' adding 'staramr/databases/data/dist/resfinder/phenicol.fsa' adding 'staramr/databases/data/dist/resfinder/quinolone.fsa' adding 'staramr/databases/data/dist/resfinder/rifampicin.fsa' adding 'staramr/databases/data/dist/resfinder/sulphonamide.fsa' adding 'staramr/databases/data/dist/resfinder/tetracycline.fsa' adding 'staramr/databases/data/dist/resfinder/trimethoprim.fsa' adding 'staramr/databases/exclude/ExcludeGenesList.py' adding 'staramr/databases/exclude/__init__.py' adding 'staramr/databases/exclude/data/genes_to_exclude.tsv' adding 'staramr/databases/resistance/ARGDrugTable.py' adding 'staramr/databases/resistance/__init__.py' adding 'staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv' adding 'staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv' adding 'staramr/databases/resistance/data/info.ini' adding 'staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py' adding 'staramr/databases/resistance/pointfinder/__init__.py' adding 'staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py' adding 'staramr/databases/resistance/resfinder/__init__.py' adding 'staramr/detection/AMRDetection.py' adding 'staramr/detection/AMRDetectionFactory.py' adding 'staramr/detection/AMRDetectionResistance.py' adding 'staramr/detection/__init__.py' adding 'staramr/exceptions/BlastProcessError.py' adding 'staramr/exceptions/CommandParseException.py' adding 'staramr/exceptions/DatabaseErrorException.py' adding 'staramr/exceptions/DatabaseNotFoundException.py' adding 'staramr/exceptions/InvalidPositionException.py' adding 'staramr/exceptions/__init__.py' adding 'staramr/results/AMRDetectionSummary.py' adding 'staramr/results/AMRDetectionSummaryResistance.py' adding 'staramr/results/QualityModule.py' adding 'staramr/results/__init__.py' adding 'staramr/subcommand/Database.py' adding 'staramr/subcommand/Search.py' adding 'staramr/subcommand/__init__.py' adding 'staramr/tests/__init__.py' adding 'staramr/tests/integration/__init__.py' adding 'staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa' adding 'staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa' adding 'staramr/tests/integration/data/16S_rrsD-1T1065.fsa' adding 'staramr/tests/integration/data/23S-A2075G.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa' adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa' adding 'staramr/tests/integration/data/gyrA-A67P-del-end.fsa' adding 'staramr/tests/integration/data/gyrA-A67P-rc.fsa' adding 'staramr/tests/integration/data/gyrA-A67P.fsa' adding 'staramr/tests/integration/data/gyrA-A67T.fsa' adding 'staramr/tests/integration/data/gyrA-A70T.fsa' adding 'staramr/tests/integration/data/gyrA-S83R.fsa' adding 'staramr/tests/integration/data/gyrA-S97N.fsa' adding 'staramr/tests/integration/data/non-match.fsa' adding 'staramr/tests/integration/data/pbp5-ins-466.fsa' adding 'staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa' adding 'staramr/tests/integration/data/test-aminoglycoside.fsa' adding 'staramr/tests/integration/data/test-detailed-summary.fsa' adding 'staramr/tests/integration/data/test-index-range-plasmid.fsa' adding 'staramr/tests/integration/data/test-mlst-summary.fsa' adding 'staramr/tests/integration/data/test-plasmids-seq.fsa' adding 'staramr/tests/integration/data/test-resistance-plasmid.fsa' adding 'staramr/tests/integration/data/test-seq-id.fsa' adding 'staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv' adding 'staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv' adding 'staramr/tests/integration/databases/__init__.py' adding 'staramr/tests/integration/databases/test_AMRDatabasesManager.py' adding 'staramr/tests/integration/databases/test_BlastDatabaseRepositories.py' adding 'staramr/tests/integration/detection/__init__.py' adding 'staramr/tests/integration/detection/test_AMRDetection.py' adding 'staramr/tests/integration/detection/test_AMRDetectionMLST.py' adding 'staramr/tests/integration/detection/test_AMRDetectionPlasmid.py' adding 'staramr/tests/unit/__init__.py' adding 'staramr/tests/unit/blast/__init__.py' adding 'staramr/tests/unit/blast/pointfinder/__init__.py' adding 'staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py' adding 'staramr/tests/unit/blast/results/__init__.py' adding 'staramr/tests/unit/blast/results/test_BlastHitPartitions.py' adding 'staramr/tests/unit/blast/results/pointfinder/__init__.py' adding 'staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py' adding 'staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py' adding 'staramr/tests/unit/blast/results/pointfinder/codon/__init__.py' adding 'staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py' adding 'staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py' adding 'staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py' adding 'staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta' adding 'staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta' adding 'staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta' adding 'staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta' adding 'staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta' adding 'staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta' adding 'staramr/tests/unit/data/test-N50-Calculation.fasta' adding 'staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta' adding 'staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta' adding 'staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta' adding 'staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta' adding 'staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta' adding 'staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta' adding 'staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta' adding 'staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta' adding 'staramr/tests/unit/results/__init__.py' adding 'staramr/tests/unit/results/test_AMRDetectionSummary.py' adding 'staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py' adding 'staramr/tests/unit/results/test_QualityModule.py' adding 'staramr-0.7.2.data/scripts/staramr' adding 'staramr-0.7.2.dist-info/LICENSE' adding 'staramr-0.7.2.dist-info/METADATA' adding 'staramr-0.7.2.dist-info/NOTICE' adding 'staramr-0.7.2.dist-info/WHEEL' adding 'staramr-0.7.2.dist-info/top_level.txt' adding 'staramr-0.7.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for staramr (pyproject.toml): finished with status 'done' Created wheel for staramr: filename=staramr-0.7.2-py3-none-any.whl size=590150 sha256=fa5cecd6a930b92af3b58d6224e8ff06cfabb4aa3605f68a1788b2aaeca0e1f2 Stored in directory: /builddir/.cache/pip/wheels/4d/52/f4/56d2e62db121a35c8f8b05324029c80c6766f5390239487322 Successfully built staramr + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Fwtfti + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 + cd staramr-0.7.2 ++ ls /builddir/build/BUILD/staramr-0.7.2/pyproject-wheeldir/staramr-0.7.2-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=staramr==0.7.2 + TMPDIR=/builddir/build/BUILD/staramr-0.7.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/staramr-0.7.2/pyproject-wheeldir staramr==0.7.2 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/staramr-0.7.2/pyproject-wheeldir Processing ./pyproject-wheeldir/staramr-0.7.2-py3-none-any.whl Installing collected packages: staramr Successfully installed staramr-0.7.2 + '[' -d /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/bin/staramr /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/bin/staramr: updating + rm -rfv /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 --record /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages/staramr-0.7.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.7.2-1.fc36 --unique-debug-suffix -0.7.2-1.fc36.x86_64 --unique-debug-src-base python-staramr-0.7.2-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/staramr-0.7.2 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.vUWRaJ + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: staramr + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-staramr-0.7.2-1.fc36.noarch Provides: python-staramr = 0.7.2-1.fc36 python3-staramr = 0.7.2-1.fc36 python3.10-staramr = 0.7.2-1.fc36 python3.10dist(staramr) = 0.7.2 python3dist(staramr) = 0.7.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.10 python3.10dist(biopython) >= 1.70 python3.10dist(coloredlogs) >= 10 python3.10dist(gitpython) >= 2.1.3 python3.10dist(green) >= 2.13 python3.10dist(numpy) >= 1.12.1 python3.10dist(pandas) >= 0.23 python3.10dist(xlsxwriter) >= 1.0.2 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 Wrote: /builddir/build/SRPMS/python-staramr-0.7.2-1.fc36.src.rpm Wrote: /builddir/build/RPMS/python3-staramr-0.7.2-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ou2AJo + umask 022 + cd /builddir/build/BUILD + cd staramr-0.7.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-staramr-0.7.2-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0