Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6eacf36c42074bff8746130fe92a030b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642204800 Wrote: /builddir/build/SRPMS/python-Troika-TB-0.0.5-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '28731eeeefca4706ae17eed2a61b15ed', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642204800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1QBgME + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Troika_TB-0.0.5 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/Troika_TB-0.0.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Troika_TB-0.0.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.INke1B + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-Troika-TB-0.0.5-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2d5d1af4e98e4730baabd1d3d8d2e834', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642204800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.t0x2U5 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Troika_TB-0.0.5 + /usr/bin/gzip -dc /builddir/build/SOURCES/Troika_TB-0.0.5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd Troika_TB-0.0.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.WZwNhE + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/Troika_TB-0.0.5/Troika_TB.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") Handling pytest from wheel metadata: Requires-Dist Requirement not satisfied: pytest Handling jinja2 from wheel metadata: Requires-Dist Requirement not satisfied: jinja2 Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement not satisfied: biopython (>=1.70) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement not satisfied: pandas (>=0.23.0) Handling numpy from wheel metadata: Requires-Dist Requirement not satisfied: numpy Handling svgwrite from wheel metadata: Requires-Dist Requirement not satisfied: svgwrite Handling psutil from wheel metadata: Requires-Dist Requirement not satisfied: psutil Handling sh from wheel metadata: Requires-Dist Requirement not satisfied: sh Handling packaging from wheel metadata: Requires-Dist Requirement satisfied: packaging (installed: packaging 21.3) Handling snakemake (>=5.9.1) from wheel metadata: Requires-Dist Requirement not satisfied: snakemake (>=5.9.1) Handling configargparse from wheel metadata: Requires-Dist Requirement not satisfied: configargparse Handling xlsxwriter from wheel metadata: Requires-Dist Requirement not satisfied: xlsxwriter Handling pytest ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: pytest ; extra == 'tests' Handling flake8 ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: flake8 ; extra == 'tests' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-Troika-TB-0.0.5-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '66ce2bb9fb2e411e98f8a146878415bd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642204800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OTm7RT + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Troika_TB-0.0.5 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/Troika_TB-0.0.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Troika_TB-0.0.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.BXXZq3 + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/Troika_TB-0.0.5/Troika_TB.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") Handling pytest from wheel metadata: Requires-Dist Requirement satisfied: pytest (installed: pytest 6.2.5) Handling jinja2 from wheel metadata: Requires-Dist Requirement satisfied: jinja2 (installed: jinja2 3.0.3) Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement satisfied: biopython (>=1.70) (installed: biopython 1.79) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement satisfied: pandas (>=0.23.0) (installed: pandas 1.3.3) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling svgwrite from wheel metadata: Requires-Dist Requirement satisfied: svgwrite (installed: svgwrite 1.4.1) Handling psutil from wheel metadata: Requires-Dist Requirement satisfied: psutil (installed: psutil 5.8.0) Handling sh from wheel metadata: Requires-Dist Requirement satisfied: sh (installed: sh 1.14.2) Handling packaging from wheel metadata: Requires-Dist Requirement satisfied: packaging (installed: packaging 21.3) Handling snakemake (>=5.9.1) from wheel metadata: Requires-Dist Requirement satisfied: snakemake (>=5.9.1) (installed: snakemake 6.12.3) Handling configargparse from wheel metadata: Requires-Dist Requirement satisfied: configargparse (installed: configargparse 1.5.3) Handling xlsxwriter from wheel metadata: Requires-Dist Requirement satisfied: xlsxwriter (installed: xlsxwriter 3.0.2) Handling pytest ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: pytest ; extra == 'tests' Handling flake8 ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: flake8 ; extra == 'tests' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-Troika-TB-0.0.5-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2ea9f6f5731c46d6a4f8bffb358737c2', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642374825.503701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.coqfnd2k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-Troika-TB.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642204800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FWcwNt + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv Troika_TB.dist-info/ removed 'Troika_TB.dist-info/LICENSE.txt' removed 'Troika_TB.dist-info/METADATA' removed 'Troika_TB.dist-info/entry_points.txt' removed 'Troika_TB.dist-info/top_level.txt' removed directory 'Troika_TB.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating Troika_TB.egg-info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing Troika_TB.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to Troika_TB.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to Troika_TB.egg-info/entry_points.txt HOOK STDOUT: writing requirements to Troika_TB.egg-info/requires.txt HOOK STDOUT: writing top-level names to Troika_TB.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'Troika_TB.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/Troika_TB-0.0.5/Troika_TB.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") Handling pytest from wheel metadata: Requires-Dist Requirement satisfied: pytest (installed: pytest 6.2.5) Handling jinja2 from wheel metadata: Requires-Dist Requirement satisfied: jinja2 (installed: jinja2 3.0.3) Handling biopython (>=1.70) from wheel metadata: Requires-Dist Requirement satisfied: biopython (>=1.70) (installed: biopython 1.79) Handling pandas (>=0.23.0) from wheel metadata: Requires-Dist Requirement satisfied: pandas (>=0.23.0) (installed: pandas 1.3.3) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling svgwrite from wheel metadata: Requires-Dist Requirement satisfied: svgwrite (installed: svgwrite 1.4.1) Handling psutil from wheel metadata: Requires-Dist Requirement satisfied: psutil (installed: psutil 5.8.0) Handling sh from wheel metadata: Requires-Dist Requirement satisfied: sh (installed: sh 1.14.2) Handling packaging from wheel metadata: Requires-Dist Requirement satisfied: packaging (installed: packaging 21.3) Handling snakemake (>=5.9.1) from wheel metadata: Requires-Dist Requirement satisfied: snakemake (>=5.9.1) (installed: snakemake 6.12.3) Handling configargparse from wheel metadata: Requires-Dist Requirement satisfied: configargparse (installed: configargparse 1.5.3) Handling xlsxwriter from wheel metadata: Requires-Dist Requirement satisfied: xlsxwriter (installed: xlsxwriter 3.0.2) Handling pytest ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: pytest ; extra == 'tests' Handling flake8 ; extra == 'tests' from wheel metadata: Requires-Dist Ignoring alien requirement: flake8 ; extra == 'tests' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IWe6qj + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + mkdir -p /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1' + TMPDIR=/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/Troika_TB-0.0.5/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/Troika_TB-0.0.5 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/tmp74mg408s running dist_info creating /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info writing /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-modern-metadata-fgc8img2/Troika_TB.dist-info' adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: Troika-TB Building wheel for Troika-TB (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/tmp0vld6y9m running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/troika_tb copying troika_tb/versions.py -> build/lib/troika_tb copying troika_tb/troika_tb.py -> build/lib/troika_tb copying troika_tb/__init__.py -> build/lib/troika_tb copying troika_tb/RunTroika.py -> build/lib/troika_tb running egg_info creating Troika_TB.egg-info writing Troika_TB.egg-info/PKG-INFO writing dependency_links to Troika_TB.egg-info/dependency_links.txt writing entry points to Troika_TB.egg-info/entry_points.txt writing requirements to Troika_TB.egg-info/requires.txt writing top-level names to Troika_TB.egg-info/top_level.txt writing manifest file 'Troika_TB.egg-info/SOURCES.txt' reading manifest file 'Troika_TB.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'Troika_TB.egg-info/SOURCES.txt' creating build/lib/troika_tb/reference copying troika_tb/reference/mask.bed -> build/lib/troika_tb/reference copying troika_tb/reference/tbdb.fasta -> build/lib/troika_tb/reference copying troika_tb/reference/tbdb.fasta.fai -> build/lib/troika_tb/reference creating build/lib/troika_tb/templates copying troika_tb/templates/config.yaml -> build/lib/troika_tb/templates copying troika_tb/templates/index.html -> build/lib/troika_tb/templates creating build/lib/troika_tb/tests copying troika_tb/tests/test_troika.py -> build/lib/troika_tb/tests copying troika_tb/tests/troika.txt -> build/lib/troika_tb/tests creating build/lib/troika_tb/utils copying troika_tb/utils/collate.py -> build/lib/troika_tb/utils copying troika_tb/utils/combine_kraken.py -> build/lib/troika_tb/utils copying troika_tb/utils/combine_seqdata.py -> build/lib/troika_tb/utils copying troika_tb/utils/compile.py -> build/lib/troika_tb/utils copying troika_tb/utils/generate_yield.py -> build/lib/troika_tb/utils copying troika_tb/utils/iqtree_generator.sh -> build/lib/troika_tb/utils copying troika_tb/utils/kraken.py -> build/lib/troika_tb/utils copying troika_tb/utils/mash.py -> build/lib/troika_tb/utils copying troika_tb/utils/run_iqtree.py -> build/lib/troika_tb/utils copying troika_tb/utils/run_snpit.py -> build/lib/troika_tb/utils copying troika_tb/utils/run_tbprofiler.py -> build/lib/troika_tb/utils copying troika_tb/utils/seqdata.py -> build/lib/troika_tb/utils copying troika_tb/utils/snippy.py -> build/lib/troika_tb/utils copying troika_tb/utils/snippy_core.py -> build/lib/troika_tb/utils copying troika_tb/utils/snippy_qc.py -> build/lib/troika_tb/utils copying troika_tb/utils/snp_dists.py -> build/lib/troika_tb/utils copying troika_tb/utils/troika.smk -> build/lib/troika_tb/utils copying troika_tb/utils/write_report.py -> build/lib/troika_tb/utils installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/troika_tb creating build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/write_report.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/troika.smk -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/snp_dists.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/snippy_qc.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/snippy_core.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/snippy.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/seqdata.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/run_tbprofiler.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/run_snpit.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/run_iqtree.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/mash.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/kraken.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/iqtree_generator.sh -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/generate_yield.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/compile.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/combine_seqdata.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/combine_kraken.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils copying build/lib/troika_tb/utils/collate.py -> build/bdist.linux-x86_64/wheel/troika_tb/utils creating build/bdist.linux-x86_64/wheel/troika_tb/tests copying build/lib/troika_tb/tests/troika.txt -> build/bdist.linux-x86_64/wheel/troika_tb/tests copying build/lib/troika_tb/tests/test_troika.py -> build/bdist.linux-x86_64/wheel/troika_tb/tests creating build/bdist.linux-x86_64/wheel/troika_tb/templates copying build/lib/troika_tb/templates/index.html -> build/bdist.linux-x86_64/wheel/troika_tb/templates copying build/lib/troika_tb/templates/config.yaml -> build/bdist.linux-x86_64/wheel/troika_tb/templates creating build/bdist.linux-x86_64/wheel/troika_tb/reference copying build/lib/troika_tb/reference/tbdb.fasta.fai -> build/bdist.linux-x86_64/wheel/troika_tb/reference copying build/lib/troika_tb/reference/tbdb.fasta -> build/bdist.linux-x86_64/wheel/troika_tb/reference copying build/lib/troika_tb/reference/mask.bed -> build/bdist.linux-x86_64/wheel/troika_tb/reference copying build/lib/troika_tb/RunTroika.py -> build/bdist.linux-x86_64/wheel/troika_tb copying build/lib/troika_tb/__init__.py -> build/bdist.linux-x86_64/wheel/troika_tb copying build/lib/troika_tb/troika_tb.py -> build/bdist.linux-x86_64/wheel/troika_tb copying build/lib/troika_tb/versions.py -> build/bdist.linux-x86_64/wheel/troika_tb running install_egg_info Copying Troika_TB.egg-info to build/bdist.linux-x86_64/wheel/Troika_TB-0.0.5-py3.10.egg-info running install_scripts adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") creating build/bdist.linux-x86_64/wheel/Troika_TB-0.0.5.dist-info/WHEEL creating '/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir/pip-wheel-08stys3b/tmpr07dc11_/Troika_TB-0.0.5-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'troika_tb/RunTroika.py' adding 'troika_tb/__init__.py' adding 'troika_tb/troika_tb.py' adding 'troika_tb/versions.py' adding 'troika_tb/reference/mask.bed' adding 'troika_tb/reference/tbdb.fasta' adding 'troika_tb/reference/tbdb.fasta.fai' adding 'troika_tb/templates/config.yaml' adding 'troika_tb/templates/index.html' adding 'troika_tb/tests/test_troika.py' adding 'troika_tb/tests/troika.txt' adding 'troika_tb/utils/collate.py' adding 'troika_tb/utils/combine_kraken.py' adding 'troika_tb/utils/combine_seqdata.py' adding 'troika_tb/utils/compile.py' adding 'troika_tb/utils/generate_yield.py' adding 'troika_tb/utils/iqtree_generator.sh' adding 'troika_tb/utils/kraken.py' adding 'troika_tb/utils/mash.py' adding 'troika_tb/utils/run_iqtree.py' adding 'troika_tb/utils/run_snpit.py' adding 'troika_tb/utils/run_tbprofiler.py' adding 'troika_tb/utils/seqdata.py' adding 'troika_tb/utils/snippy.py' adding 'troika_tb/utils/snippy_core.py' adding 'troika_tb/utils/snippy_qc.py' adding 'troika_tb/utils/snp_dists.py' adding 'troika_tb/utils/troika.smk' adding 'troika_tb/utils/write_report.py' adding 'Troika_TB-0.0.5.dist-info/LICENSE.txt' adding 'Troika_TB-0.0.5.dist-info/METADATA' adding 'Troika_TB-0.0.5.dist-info/WHEEL' adding 'Troika_TB-0.0.5.dist-info/entry_points.txt' adding 'Troika_TB-0.0.5.dist-info/top_level.txt' adding 'Troika_TB-0.0.5.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for Troika-TB (pyproject.toml): finished with status 'done' Created wheel for Troika-TB: filename=Troika_TB-0.0.5-py3-none-any.whl size=1320053 sha256=d4d0262996599a2449eb70312af4d31e7fd129c29942ff5f66863d50bfd2fc4a Stored in directory: /builddir/.cache/pip/wheels/8c/a3/4f/255839a925259609a11505d6d35fbe634ce7f2a5acc4d3fd79 Successfully built Troika-TB + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.UP3GbZ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 + cd Troika_TB-0.0.5 ++ ls /builddir/build/BUILD/Troika_TB-0.0.5/pyproject-wheeldir/Troika_TB-0.0.5-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=Troika_TB==0.0.5 + TMPDIR=/builddir/build/BUILD/Troika_TB-0.0.5/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/Troika_TB-0.0.5/pyproject-wheeldir Troika_TB==0.0.5 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/Troika_TB-0.0.5/pyproject-wheeldir Processing ./pyproject-wheeldir/Troika_TB-0.0.5-py3-none-any.whl Installing collected packages: Troika-TB Creating /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin/troika to 755 Successfully installed Troika-TB-0.0.5 + '[' -d /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin/troika /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin/troika: updating + rm -rfv /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 --record /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages/Troika_TB-0.0.5.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.0.5-1.fc36 --unique-debug-suffix -0.0.5-1.fc36.x86_64 --unique-debug-src-base python-Troika-TB-0.0.5-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Troika_TB-0.0.5 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.FVV1km + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: troika_tb + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-Troika-TB-0.0.5-1.fc36.noarch Provides: python-Troika-TB = 0.0.5-1.fc36 python3-Troika-TB = 0.0.5-1.fc36 python3.10-Troika-TB = 0.0.5-1.fc36 python3.10dist(troika-tb) = 0.0.5 python3dist(troika-tb) = 0.0.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.10 python3.10dist(biopython) >= 1.70 python3.10dist(configargparse) python3.10dist(jinja2) python3.10dist(numpy) python3.10dist(packaging) python3.10dist(pandas) >= 0.23 python3.10dist(psutil) python3.10dist(pytest) python3.10dist(sh) python3.10dist(snakemake) >= 5.9.1 python3.10dist(svgwrite) python3.10dist(xlsxwriter) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 Wrote: /builddir/build/SRPMS/python-Troika-TB-0.0.5-1.fc36.src.rpm Wrote: /builddir/build/RPMS/python3-Troika-TB-0.0.5-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.t7cXrX + umask 022 + cd /builddir/build/BUILD + cd Troika_TB-0.0.5 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-Troika-TB-0.0.5-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0