Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a8f387d644824a02938c71e7eadf506e', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643587200 Wrote: /builddir/build/SRPMS/python-baseqSNV-1.6-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ec14bec32c094acea6f1004d8083e6fd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643587200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.LIJsTM + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf baseqSNV-1.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/baseqSNV-1.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd baseqSNV-1.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2lvR1F + umask 022 + cd /builddir/build/BUILD + cd baseqSNV-1.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-baseqSNV-1.6-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5041072a40ae4ff5a43edf1475f28d64', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643587200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xuww5E + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf baseqSNV-1.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/baseqSNV-1.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd baseqSNV-1.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2x4mea + umask 022 + cd /builddir/build/BUILD + cd baseqSNV-1.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running egg_info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running dist_info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/baseqSNV-1.6/baseqSNV.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") Handling pandas from wheel metadata: Requires-Dist Requirement not satisfied: pandas Handling click from wheel metadata: Requires-Dist Requirement not satisfied: click Handling configparser from wheel metadata: Requires-Dist Requirement not satisfied: configparser Handling matplotlib from wheel metadata: Requires-Dist Requirement not satisfied: matplotlib Handling check-manifest ; extra == 'dev' from wheel metadata: Requires-Dist Ignoring alien requirement: check-manifest ; extra == 'dev' Handling coverage ; extra == 'test' from wheel metadata: Requires-Dist Ignoring alien requirement: coverage ; extra == 'test' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-baseqSNV-1.6-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e6f661b0588143c9821bb00c5a499aae', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643587200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hdgBc6 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf baseqSNV-1.6 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/baseqSNV-1.6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd baseqSNV-1.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.n8c6ud + umask 022 + cd /builddir/build/BUILD + cd baseqSNV-1.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running egg_info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running dist_info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/baseqSNV-1.6/baseqSNV.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling click from wheel metadata: Requires-Dist Requirement satisfied: click (installed: click 8.0.3) Handling configparser from wheel metadata: Requires-Dist Requirement satisfied: configparser (installed: configparser 5.2.0) Handling matplotlib from wheel metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.5.1) Handling check-manifest ; extra == 'dev' from wheel metadata: Requires-Dist Ignoring alien requirement: check-manifest ; extra == 'dev' Handling coverage ; extra == 'test' from wheel metadata: Requires-Dist Ignoring alien requirement: coverage ; extra == 'test' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-baseqSNV-1.6-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f6408874aa1544c9aa28759dff251413', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1643734950.978346/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0muvdw5u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-baseqSNV.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643587200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.v1e3uF + umask 022 + cd /builddir/build/BUILD + cd baseqSNV-1.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv baseqSNV.dist-info/ removed 'baseqSNV.dist-info/LICENSE.txt' removed 'baseqSNV.dist-info/METADATA' removed 'baseqSNV.dist-info/entry_points.txt' removed 'baseqSNV.dist-info/top_level.txt' removed directory 'baseqSNV.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running egg_info HOOK STDOUT: creating baseqSNV.egg-info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' HOOK STDOUT: running dist_info HOOK STDOUT: writing baseqSNV.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to baseqSNV.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to baseqSNV.egg-info/entry_points.txt HOOK STDOUT: writing requirements to baseqSNV.egg-info/requires.txt HOOK STDOUT: writing top-level names to baseqSNV.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'baseqSNV.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/baseqSNV-1.6/baseqSNV.dist-info' HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling click from wheel metadata: Requires-Dist Requirement satisfied: click (installed: click 8.0.3) Handling configparser from wheel metadata: Requires-Dist Requirement satisfied: configparser (installed: configparser 5.2.0) Handling matplotlib from wheel metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.5.1) Handling check-manifest ; extra == 'dev' from wheel metadata: Requires-Dist Ignoring alien requirement: check-manifest ; extra == 'dev' Handling coverage ; extra == 'test' from wheel metadata: Requires-Dist Ignoring alien requirement: coverage ; extra == 'test' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.911uzY + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/baseqSNV-1.6/.package_note-python-baseqSNV-1.6-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-baseqSNV 1.6-1.fc36 x86_64 + cd baseqSNV-1.6 + mkdir -p /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/baseqSNV-1.6/.package_note-python-baseqSNV-1.6-1.fc36.x86_64.ld' + TMPDIR=/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/baseqSNV-1.6/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/baseqSNV-1.6 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/tmpfpue9or5 running dist_info creating /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info writing /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-modern-metadata-mxuor7ls/baseqSNV.dist-info' adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: baseqSNV Building wheel for baseqSNV (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/tmp2jggiekf running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/baseqSNV copying baseqSNV/quality.py -> build/lib/baseqSNV copying baseqSNV/process.py -> build/lib/baseqSNV copying baseqSNV/pipe.py -> build/lib/baseqSNV copying baseqSNV/config.py -> build/lib/baseqSNV copying baseqSNV/cmd.py -> build/lib/baseqSNV copying baseqSNV/annovar.py -> build/lib/baseqSNV copying baseqSNV/__init__.py -> build/lib/baseqSNV creating build/lib/baseqSNV/vcf copying baseqSNV/vcf/GATK.py -> build/lib/baseqSNV/vcf copying baseqSNV/vcf/cmd.py -> build/lib/baseqSNV/vcf copying baseqSNV/vcf/annovar.py -> build/lib/baseqSNV/vcf copying baseqSNV/vcf/__init__.py -> build/lib/baseqSNV/vcf creating build/lib/baseqSNV/qc copying baseqSNV/qc/saturate.py -> build/lib/baseqSNV/qc copying baseqSNV/qc/enrich.py -> build/lib/baseqSNV/qc copying baseqSNV/qc/cmd.py -> build/lib/baseqSNV/qc copying baseqSNV/qc/__init__.py -> build/lib/baseqSNV/qc creating build/lib/baseqSNV/gatk copying baseqSNV/gatk/selectvar.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/pipe.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/mutect.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/markdup.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/createpon.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/callvar.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/bqsr.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/align.py -> build/lib/baseqSNV/gatk copying baseqSNV/gatk/__init__.py -> build/lib/baseqSNV/gatk installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/baseqSNV creating build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/__init__.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/align.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/bqsr.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/callvar.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/createpon.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/markdup.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/mutect.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/pipe.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk copying build/lib/baseqSNV/gatk/selectvar.py -> build/bdist.linux-x86_64/wheel/baseqSNV/gatk creating build/bdist.linux-x86_64/wheel/baseqSNV/qc copying build/lib/baseqSNV/qc/__init__.py -> build/bdist.linux-x86_64/wheel/baseqSNV/qc copying build/lib/baseqSNV/qc/cmd.py -> build/bdist.linux-x86_64/wheel/baseqSNV/qc copying build/lib/baseqSNV/qc/enrich.py -> build/bdist.linux-x86_64/wheel/baseqSNV/qc copying build/lib/baseqSNV/qc/saturate.py -> build/bdist.linux-x86_64/wheel/baseqSNV/qc creating build/bdist.linux-x86_64/wheel/baseqSNV/vcf copying build/lib/baseqSNV/vcf/__init__.py -> build/bdist.linux-x86_64/wheel/baseqSNV/vcf copying build/lib/baseqSNV/vcf/annovar.py -> build/bdist.linux-x86_64/wheel/baseqSNV/vcf copying build/lib/baseqSNV/vcf/cmd.py -> build/bdist.linux-x86_64/wheel/baseqSNV/vcf copying build/lib/baseqSNV/vcf/GATK.py -> build/bdist.linux-x86_64/wheel/baseqSNV/vcf copying build/lib/baseqSNV/__init__.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/annovar.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/cmd.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/config.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/pipe.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/process.py -> build/bdist.linux-x86_64/wheel/baseqSNV copying build/lib/baseqSNV/quality.py -> build/bdist.linux-x86_64/wheel/baseqSNV running install_egg_info running egg_info creating baseqSNV.egg-info writing baseqSNV.egg-info/PKG-INFO writing dependency_links to baseqSNV.egg-info/dependency_links.txt writing entry points to baseqSNV.egg-info/entry_points.txt writing requirements to baseqSNV.egg-info/requires.txt writing top-level names to baseqSNV.egg-info/top_level.txt writing manifest file 'baseqSNV.egg-info/SOURCES.txt' reading manifest file 'baseqSNV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'data' warning: no previously-included files matching '*' found under directory 'Tests' adding license file 'LICENSE.txt' writing manifest file 'baseqSNV.egg-info/SOURCES.txt' Copying baseqSNV.egg-info to build/bdist.linux-x86_64/wheel/baseqSNV-1.6-py3.10.egg-info running install_scripts adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/baseqSNV-1.6.dist-info/WHEEL creating '/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir/pip-wheel-dwyff4ze/tmpyvz6ldpp/baseqSNV-1.6-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'baseqSNV/__init__.py' adding 'baseqSNV/annovar.py' adding 'baseqSNV/cmd.py' adding 'baseqSNV/config.py' adding 'baseqSNV/pipe.py' adding 'baseqSNV/process.py' adding 'baseqSNV/quality.py' adding 'baseqSNV/gatk/__init__.py' adding 'baseqSNV/gatk/align.py' adding 'baseqSNV/gatk/bqsr.py' adding 'baseqSNV/gatk/callvar.py' adding 'baseqSNV/gatk/createpon.py' adding 'baseqSNV/gatk/markdup.py' adding 'baseqSNV/gatk/mutect.py' adding 'baseqSNV/gatk/pipe.py' adding 'baseqSNV/gatk/selectvar.py' adding 'baseqSNV/qc/__init__.py' adding 'baseqSNV/qc/cmd.py' adding 'baseqSNV/qc/enrich.py' adding 'baseqSNV/qc/saturate.py' adding 'baseqSNV/vcf/GATK.py' adding 'baseqSNV/vcf/__init__.py' adding 'baseqSNV/vcf/annovar.py' adding 'baseqSNV/vcf/cmd.py' adding 'baseqSNV-1.6.dist-info/LICENSE.txt' adding 'baseqSNV-1.6.dist-info/METADATA' adding 'baseqSNV-1.6.dist-info/WHEEL' adding 'baseqSNV-1.6.dist-info/entry_points.txt' adding 'baseqSNV-1.6.dist-info/top_level.txt' adding 'baseqSNV-1.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for baseqSNV (pyproject.toml): finished with status 'done' Created wheel for baseqSNV: filename=baseqSNV-1.6-py2.py3-none-any.whl size=23975 sha256=2868e47e64cc44baa303a660c3ccb4ed8b4bc968706a06083c18ac40a107e2bb Stored in directory: /builddir/.cache/pip/wheels/c0/d4/32/9879421d6f3dd2ad2d45a0b8f33941b5c48397888c040dc26d Successfully built baseqSNV + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1FTMgc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/baseqSNV-1.6/.package_note-python-baseqSNV-1.6-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd baseqSNV-1.6 ++ ls /builddir/build/BUILD/baseqSNV-1.6/pyproject-wheeldir/baseqSNV-1.6-py2.py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=baseqSNV==1.6 + TMPDIR=/builddir/build/BUILD/baseqSNV-1.6/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/baseqSNV-1.6/pyproject-wheeldir baseqSNV==1.6 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/baseqSNV-1.6/pyproject-wheeldir Processing ./pyproject-wheeldir/baseqSNV-1.6-py2.py3-none-any.whl Installing collected packages: baseqSNV Creating /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin/baseqSNV to 755 Successfully installed baseqSNV-1.6 + '[' -d /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin/baseqSNV /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin/baseqSNV: updating + rm -rfv /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 --record /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages/baseqSNV-1.6.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.6-1.fc36 --unique-debug-suffix -1.6-1.fc36.x86_64 --unique-debug-src-base python-baseqSNV-1.6-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/baseqSNV-1.6 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Xhci4L + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/baseqSNV-1.6/.package_note-python-baseqSNV-1.6-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-baseqSNV 1.6-1.fc36 x86_64 + cd baseqSNV-1.6 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: baseqSNV + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-baseqSNV-1.6-1.fc36.noarch Provides: python-baseqSNV = 1.6-1.fc36 python3-baseqSNV = 1.6-1.fc36 python3.10-baseqSNV = 1.6-1.fc36 python3.10dist(baseqsnv) = 1.6 python3dist(baseqsnv) = 1.6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.10 python3.10dist(click) python3.10dist(configparser) python3.10dist(matplotlib) python3.10dist(pandas) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 Wrote: /builddir/build/SRPMS/python-baseqSNV-1.6-1.fc36.src.rpm Wrote: /builddir/build/RPMS/python3-baseqSNV-1.6-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.E60May + umask 022 + cd /builddir/build/BUILD + cd baseqSNV-1.6 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-baseqSNV-1.6-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0