Mock Version: 2.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'bb02b8d099e74a9eafb17f4a7bad38a3', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643932800 Wrote: /builddir/build/SRPMS/python-oligotyping-3.1-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3b32b78d04034f9f895a17c0a40a1873', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643932800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ERhHlC + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf oligotyping-3.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/oligotyping-3.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd oligotyping-3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.LsEWam + umask 022 + cd /builddir/build/BUILD + cd oligotyping-3.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-oligotyping-3.1-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e9810eeb8fd741ff8167b0c834cfcc14', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643932800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0dVCcn + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf oligotyping-3.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/oligotyping-3.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd oligotyping-3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0obybR + umask 022 + cd /builddir/build/BUILD + cd oligotyping-3.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/oligotyping-3.1/oligotyping.dist-info' HOOK STDOUT: adding license file "COPYING" (matched pattern "COPYING*") Handling numpy from wheel metadata: Requires-Dist Requirement not satisfied: numpy Handling Matplotlib from wheel metadata: Requires-Dist Requirement not satisfied: Matplotlib Handling BioPython from wheel metadata: Requires-Dist Requirement not satisfied: BioPython Handling SciPy from wheel metadata: Requires-Dist Requirement not satisfied: SciPy Handling Django from wheel metadata: Requires-Dist Requirement not satisfied: Django Handling illumina-utils from wheel metadata: Requires-Dist Requirement not satisfied: illumina-utils Handling networkx from wheel metadata: Requires-Dist Requirement not satisfied: networkx + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-oligotyping-3.1-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd203d09812d44f878fa3f7c38e923848', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643932800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rxDWe3 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf oligotyping-3.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/oligotyping-3.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd oligotyping-3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0HWNt1 + umask 022 + cd /builddir/build/BUILD + cd oligotyping-3.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/oligotyping-3.1/oligotyping.dist-info' HOOK STDOUT: adding license file "COPYING" (matched pattern "COPYING*") Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling Matplotlib from wheel metadata: Requires-Dist Requirement satisfied: Matplotlib (installed: Matplotlib 3.5.1) Handling BioPython from wheel metadata: Requires-Dist Requirement satisfied: BioPython (installed: BioPython 1.79) Handling SciPy from wheel metadata: Requires-Dist Requirement satisfied: SciPy (installed: SciPy 1.7.3) Handling Django from wheel metadata: Requires-Dist Requirement satisfied: Django (installed: Django 4.0.2) Handling illumina-utils from wheel metadata: Requires-Dist Requirement satisfied: illumina-utils (installed: illumina-utils 2.12) Handling networkx from wheel metadata: Requires-Dist Requirement satisfied: networkx (installed: networkx 2.6.3) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-oligotyping-3.1-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f6faf43c9e5849c6a829bc3743ae435d', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1644149769.562776/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l3ut69y6:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-oligotyping.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1643932800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.14B1gS + umask 022 + cd /builddir/build/BUILD + cd oligotyping-3.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv oligotyping.dist-info/ removed 'oligotyping.dist-info/COPYING' removed 'oligotyping.dist-info/METADATA' removed 'oligotyping.dist-info/top_level.txt' removed directory 'oligotyping.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating oligotyping.egg-info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing oligotyping.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to oligotyping.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to oligotyping.egg-info/requires.txt HOOK STDOUT: writing top-level names to oligotyping.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'COPYING' HOOK STDOUT: writing manifest file 'oligotyping.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/oligotyping-3.1/oligotyping.dist-info' HOOK STDOUT: adding license file "COPYING" (matched pattern "COPYING*") Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling Matplotlib from wheel metadata: Requires-Dist Requirement satisfied: Matplotlib (installed: Matplotlib 3.5.1) Handling BioPython from wheel metadata: Requires-Dist Requirement satisfied: BioPython (installed: BioPython 1.79) Handling SciPy from wheel metadata: Requires-Dist Requirement satisfied: SciPy (installed: SciPy 1.7.3) Handling Django from wheel metadata: Requires-Dist Requirement satisfied: Django (installed: Django 4.0.2) Handling illumina-utils from wheel metadata: Requires-Dist Requirement satisfied: illumina-utils (installed: illumina-utils 2.12) Handling networkx from wheel metadata: Requires-Dist Requirement satisfied: networkx (installed: networkx 2.6.3) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AT6L3q + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/oligotyping-3.1/.package_note-python-oligotyping-3.1-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-oligotyping 3.1-1.fc36 x86_64 + cd oligotyping-3.1 + mkdir -p /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/oligotyping-3.1/.package_note-python-oligotyping-3.1-1.fc36.x86_64.ld' + TMPDIR=/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/oligotyping-3.1/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/oligotyping-3.1 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/tmpiln_xr_u running dist_info creating /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info writing /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'COPYING' writing manifest file '/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-modern-metadata-8nb2lmq3/oligotyping.dist-info' adding license file "COPYING" (matched pattern "COPYING*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: oligotyping Building wheel for oligotyping (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/tmp134f0rxi running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/Oligotyping copying Oligotyping/__init__.py -> build/lib/Oligotyping creating build/lib/Oligotyping/lib copying Oligotyping/lib/entropy.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/decomposer.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/fastalib.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/topology.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/oligotyping.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/shared.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/__init__.py -> build/lib/Oligotyping/lib copying Oligotyping/lib/b6lib.py -> build/lib/Oligotyping/lib creating build/lib/Oligotyping/utils copying Oligotyping/utils/random_colors.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/blast.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/utils.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/cosine_similarity.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/parsers.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/__init__.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/constants.py -> build/lib/Oligotyping/utils copying Oligotyping/utils/aligner.py -> build/lib/Oligotyping/utils creating build/lib/Oligotyping/visualization copying Oligotyping/visualization/oligotype_sets_distribution.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/decomposition_topology.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/frequency_curve_and_entropy.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/entropy_distribution_bar.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/__init__.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/oligotype_distribution_across_samples.py -> build/lib/Oligotyping/visualization copying Oligotyping/visualization/oligotype_distribution_stack_bar.py -> build/lib/Oligotyping/visualization creating build/lib/Oligotyping/utils/html copying Oligotyping/utils/html/for_decomposition.py -> build/lib/Oligotyping/utils/html copying Oligotyping/utils/html/__init__.py -> build/lib/Oligotyping/utils/html copying Oligotyping/utils/html/for_oligotyping.py -> build/lib/Oligotyping/utils/html copying Oligotyping/utils/html/error.py -> build/lib/Oligotyping/utils/html running egg_info creating oligotyping.egg-info writing oligotyping.egg-info/PKG-INFO writing dependency_links to oligotyping.egg-info/dependency_links.txt writing requirements to oligotyping.egg-info/requires.txt writing top-level names to oligotyping.egg-info/top_level.txt writing manifest file 'oligotyping.egg-info/SOURCES.txt' reading manifest file 'oligotyping.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'COPYING' writing manifest file 'oligotyping.egg-info/SOURCES.txt' creating build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/README -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/g.pie.js -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/g.raphael.js -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/jquery-1.7.1.js -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/morris.LICENSE -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/morris.js -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/popup.js -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/raphael.LICENSE -> build/lib/Oligotyping/utils/html/scripts copying Oligotyping/utils/html/scripts/raphael.js -> build/lib/Oligotyping/utils/html/scripts creating build/lib/Oligotyping/utils/html/static copying Oligotyping/utils/html/static/colorbar.png -> build/lib/Oligotyping/utils/html/static copying Oligotyping/utils/html/static/header_1.png -> build/lib/Oligotyping/utils/html/static copying Oligotyping/utils/html/static/header_2.png -> build/lib/Oligotyping/utils/html/static copying Oligotyping/utils/html/static/missing_image.png -> build/lib/Oligotyping/utils/html/static copying Oligotyping/utils/html/static/style.css -> build/lib/Oligotyping/utils/html/static creating build/lib/Oligotyping/utils/html/templates copying Oligotyping/utils/html/templates/index_for_decomposition.tmpl -> build/lib/Oligotyping/utils/html/templates copying Oligotyping/utils/html/templates/index_for_oligo.tmpl -> build/lib/Oligotyping/utils/html/templates copying Oligotyping/utils/html/templates/pie_charts_js.tmpl -> build/lib/Oligotyping/utils/html/templates copying Oligotyping/utils/html/templates/single_oligo.tmpl -> build/lib/Oligotyping/utils/html/templates running build_scripts creating build/scripts-3.10 copying and adjusting bin/entropy-analysis -> build/scripts-3.10 copying and adjusting bin/o-subsample-matrix-file -> build/scripts-3.10 copying and adjusting bin/o-smart-trim -> build/scripts-3.10 copying bin/o-boxplots.R -> build/scripts-3.10 copying and adjusting bin/o-gen-stackbar-with-sets-from-ENVIRONMENT -> build/scripts-3.10 copying and adjusting bin/o-fasta-length-distribution -> build/scripts-3.10 copying and adjusting bin/decompose -> build/scripts-3.10 copying bin/o-treat-homopolymer-regions -> build/scripts-3.10 copying and adjusting bin/o-trim-uninformative-columns-from-alignment -> build/scripts-3.10 copying bin/o-metaMDS-analysis.R -> build/scripts-3.10 copying and adjusting bin/o-trim -> build/scripts-3.10 copying bin/o-cluster-analysis.R -> build/scripts-3.10 copying bin/o-heatmap.R -> build/scripts-3.10 copying and adjusting bin/o-sequence-distances -> build/scripts-3.10 copying and adjusting bin/o-generate-matching-qual-file -> build/scripts-3.10 copying and adjusting bin/o-subsample-fasta-file -> build/scripts-3.10 copying and adjusting bin/o-get-sample-info-from-fasta -> build/scripts-3.10 copying bin/o-metaMDS-analysis-with-metadata.R -> build/scripts-3.10 copying and adjusting bin/o-create-GG-alignment-template-from-taxon -> build/scripts-3.10 copying bin/o-lines-for-each-column.R -> build/scripts-3.10 copying and adjusting bin/o-pad-with-gaps -> build/scripts-3.10 copying and adjusting bin/o-visualize-qual-scores-along-columns.py -> build/scripts-3.10 copying and adjusting bin/o-gen-dicts-for-qual-stats -> build/scripts-3.10 copying and adjusting bin/o-generate-matrix-files-from-ENVIRONMENT -> build/scripts-3.10 copying and adjusting bin/o-get-reads-from-fasta -> build/scripts-3.10 copying bin/o-visualize-distance-matrix.R -> build/scripts-3.10 copying and adjusting bin/o-keep-or-remove-samples-from-fasta -> build/scripts-3.10 copying and adjusting bin/o-populate-datasets-from-VAMPS-download -> build/scripts-3.10 copying bin/o-stackbar.R -> build/scripts-3.10 copying and adjusting bin/o-generate-environment-from-matrix-counts -> build/scripts-3.10 copying and adjusting bin/o-generate-gephi-network-file -> build/scripts-3.10 copying and adjusting bin/o-generate-html-output -> build/scripts-3.10 copying and adjusting bin/oligotype -> build/scripts-3.10 copying and adjusting bin/o-generate-oligo-base-networks -> build/scripts-3.10 copying and adjusting bin/o-generate-consensus-from-alignment -> build/scripts-3.10 copying and adjusting bin/o-remove-gaps -> build/scripts-3.10 copying bin/o-bars-for-each-column.R -> build/scripts-3.10 copying and adjusting bin/o-generate-exclusive-figures -> build/scripts-3.10 changing mode of build/scripts-3.10/entropy-analysis from 644 to 755 changing mode of build/scripts-3.10/o-subsample-matrix-file from 644 to 755 changing mode of build/scripts-3.10/o-smart-trim from 644 to 755 changing mode of build/scripts-3.10/o-gen-stackbar-with-sets-from-ENVIRONMENT from 644 to 755 changing mode of build/scripts-3.10/o-fasta-length-distribution from 644 to 755 changing mode of build/scripts-3.10/decompose from 644 to 755 changing mode of build/scripts-3.10/o-trim-uninformative-columns-from-alignment from 644 to 755 changing mode of build/scripts-3.10/o-trim from 644 to 755 changing mode of build/scripts-3.10/o-sequence-distances from 644 to 755 changing mode of build/scripts-3.10/o-generate-matching-qual-file from 644 to 755 changing mode of build/scripts-3.10/o-subsample-fasta-file from 644 to 755 changing mode of build/scripts-3.10/o-get-sample-info-from-fasta from 644 to 755 changing mode of build/scripts-3.10/o-create-GG-alignment-template-from-taxon from 644 to 755 changing mode of build/scripts-3.10/o-pad-with-gaps from 644 to 755 changing mode of build/scripts-3.10/o-visualize-qual-scores-along-columns.py from 644 to 755 changing mode of build/scripts-3.10/o-gen-dicts-for-qual-stats from 644 to 755 changing mode of build/scripts-3.10/o-generate-matrix-files-from-ENVIRONMENT from 644 to 755 changing mode of build/scripts-3.10/o-get-reads-from-fasta from 644 to 755 changing mode of build/scripts-3.10/o-keep-or-remove-samples-from-fasta from 644 to 755 changing mode of build/scripts-3.10/o-populate-datasets-from-VAMPS-download from 644 to 755 changing mode of build/scripts-3.10/o-generate-environment-from-matrix-counts from 644 to 755 changing mode of build/scripts-3.10/o-generate-gephi-network-file from 644 to 755 changing mode of build/scripts-3.10/o-generate-html-output from 644 to 755 changing mode of build/scripts-3.10/oligotype from 644 to 755 changing mode of build/scripts-3.10/o-generate-oligo-base-networks from 644 to 755 changing mode of build/scripts-3.10/o-generate-consensus-from-alignment from 644 to 755 changing mode of build/scripts-3.10/o-remove-gaps from 644 to 755 changing mode of build/scripts-3.10/o-generate-exclusive-figures from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/Oligotyping creating build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/oligotype_distribution_stack_bar.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/oligotype_distribution_across_samples.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/__init__.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/entropy_distribution_bar.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/frequency_curve_and_entropy.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/decomposition_topology.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization copying build/lib/Oligotyping/visualization/oligotype_sets_distribution.py -> build/bdist.linux-x86_64/wheel/Oligotyping/visualization creating build/bdist.linux-x86_64/wheel/Oligotyping/utils creating build/bdist.linux-x86_64/wheel/Oligotyping/utils/html creating build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/templates copying build/lib/Oligotyping/utils/html/templates/single_oligo.tmpl -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/templates copying build/lib/Oligotyping/utils/html/templates/pie_charts_js.tmpl -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/templates copying build/lib/Oligotyping/utils/html/templates/index_for_oligo.tmpl -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/templates copying build/lib/Oligotyping/utils/html/templates/index_for_decomposition.tmpl -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/templates creating build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static copying build/lib/Oligotyping/utils/html/static/style.css -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static copying build/lib/Oligotyping/utils/html/static/missing_image.png -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static copying build/lib/Oligotyping/utils/html/static/header_2.png -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static copying build/lib/Oligotyping/utils/html/static/header_1.png -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static copying build/lib/Oligotyping/utils/html/static/colorbar.png -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/static creating build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/raphael.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/raphael.LICENSE -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/popup.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/morris.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/morris.LICENSE -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/jquery-1.7.1.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/g.raphael.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/g.pie.js -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/scripts/README -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html/scripts copying build/lib/Oligotyping/utils/html/error.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html copying build/lib/Oligotyping/utils/html/for_oligotyping.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html copying build/lib/Oligotyping/utils/html/__init__.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html copying build/lib/Oligotyping/utils/html/for_decomposition.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils/html copying build/lib/Oligotyping/utils/aligner.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/constants.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/__init__.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/parsers.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/cosine_similarity.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/utils.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/blast.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils copying build/lib/Oligotyping/utils/random_colors.py -> build/bdist.linux-x86_64/wheel/Oligotyping/utils creating build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/b6lib.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/__init__.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/shared.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/oligotyping.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/topology.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/fastalib.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/decomposer.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/lib/entropy.py -> build/bdist.linux-x86_64/wheel/Oligotyping/lib copying build/lib/Oligotyping/__init__.py -> build/bdist.linux-x86_64/wheel/Oligotyping running install_egg_info Copying oligotyping.egg-info to build/bdist.linux-x86_64/wheel/oligotyping-3.1-py3.10.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/oligotyping-3.1.data creating build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-exclusive-figures -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-bars-for-each-column.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-remove-gaps -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-consensus-from-alignment -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-oligo-base-networks -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/oligotype -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-html-output -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-gephi-network-file -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-environment-from-matrix-counts -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-stackbar.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-populate-datasets-from-VAMPS-download -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-keep-or-remove-samples-from-fasta -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-visualize-distance-matrix.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-get-reads-from-fasta -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-matrix-files-from-ENVIRONMENT -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-gen-dicts-for-qual-stats -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-visualize-qual-scores-along-columns.py -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-pad-with-gaps -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-lines-for-each-column.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-create-GG-alignment-template-from-taxon -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-metaMDS-analysis-with-metadata.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-get-sample-info-from-fasta -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-subsample-fasta-file -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-generate-matching-qual-file -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-sequence-distances -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-heatmap.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-cluster-analysis.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-trim -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-metaMDS-analysis.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-trim-uninformative-columns-from-alignment -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-treat-homopolymer-regions -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/decompose -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-fasta-length-distribution -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-gen-stackbar-with-sets-from-ENVIRONMENT -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-boxplots.R -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-smart-trim -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/o-subsample-matrix-file -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts copying build/scripts-3.10/entropy-analysis -> build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-exclusive-figures to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-bars-for-each-column.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-remove-gaps to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-consensus-from-alignment to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-oligo-base-networks to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/oligotype to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-html-output to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-gephi-network-file to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-environment-from-matrix-counts to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-stackbar.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-populate-datasets-from-VAMPS-download to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-keep-or-remove-samples-from-fasta to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-visualize-distance-matrix.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-get-reads-from-fasta to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-matrix-files-from-ENVIRONMENT to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-gen-dicts-for-qual-stats to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-visualize-qual-scores-along-columns.py to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-pad-with-gaps to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-lines-for-each-column.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-create-GG-alignment-template-from-taxon to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-metaMDS-analysis-with-metadata.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-get-sample-info-from-fasta to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-subsample-fasta-file to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-generate-matching-qual-file to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-sequence-distances to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-heatmap.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-cluster-analysis.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-trim to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-metaMDS-analysis.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-trim-uninformative-columns-from-alignment to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-treat-homopolymer-regions to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/decompose to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-fasta-length-distribution to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-gen-stackbar-with-sets-from-ENVIRONMENT to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-boxplots.R to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-smart-trim to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/o-subsample-matrix-file to 755 changing mode of build/bdist.linux-x86_64/wheel/oligotyping-3.1.data/scripts/entropy-analysis to 755 adding license file "COPYING" (matched pattern "COPYING*") creating build/bdist.linux-x86_64/wheel/oligotyping-3.1.dist-info/WHEEL creating '/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir/pip-wheel-7kbc6sj6/tmpw2idbfvw/oligotyping-3.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'Oligotyping/__init__.py' adding 'Oligotyping/lib/__init__.py' adding 'Oligotyping/lib/b6lib.py' adding 'Oligotyping/lib/decomposer.py' adding 'Oligotyping/lib/entropy.py' adding 'Oligotyping/lib/fastalib.py' adding 'Oligotyping/lib/oligotyping.py' adding 'Oligotyping/lib/shared.py' adding 'Oligotyping/lib/topology.py' adding 'Oligotyping/utils/__init__.py' adding 'Oligotyping/utils/aligner.py' adding 'Oligotyping/utils/blast.py' adding 'Oligotyping/utils/constants.py' adding 'Oligotyping/utils/cosine_similarity.py' adding 'Oligotyping/utils/parsers.py' adding 'Oligotyping/utils/random_colors.py' adding 'Oligotyping/utils/utils.py' adding 'Oligotyping/utils/html/__init__.py' adding 'Oligotyping/utils/html/error.py' adding 'Oligotyping/utils/html/for_decomposition.py' adding 'Oligotyping/utils/html/for_oligotyping.py' adding 'Oligotyping/utils/html/scripts/README' adding 'Oligotyping/utils/html/scripts/g.pie.js' adding 'Oligotyping/utils/html/scripts/g.raphael.js' adding 'Oligotyping/utils/html/scripts/jquery-1.7.1.js' adding 'Oligotyping/utils/html/scripts/morris.LICENSE' adding 'Oligotyping/utils/html/scripts/morris.js' adding 'Oligotyping/utils/html/scripts/popup.js' adding 'Oligotyping/utils/html/scripts/raphael.LICENSE' adding 'Oligotyping/utils/html/scripts/raphael.js' adding 'Oligotyping/utils/html/static/colorbar.png' adding 'Oligotyping/utils/html/static/header_1.png' adding 'Oligotyping/utils/html/static/header_2.png' adding 'Oligotyping/utils/html/static/missing_image.png' adding 'Oligotyping/utils/html/static/style.css' adding 'Oligotyping/utils/html/templates/index_for_decomposition.tmpl' adding 'Oligotyping/utils/html/templates/index_for_oligo.tmpl' adding 'Oligotyping/utils/html/templates/pie_charts_js.tmpl' adding 'Oligotyping/utils/html/templates/single_oligo.tmpl' adding 'Oligotyping/visualization/__init__.py' adding 'Oligotyping/visualization/decomposition_topology.py' adding 'Oligotyping/visualization/entropy_distribution_bar.py' adding 'Oligotyping/visualization/frequency_curve_and_entropy.py' adding 'Oligotyping/visualization/oligotype_distribution_across_samples.py' adding 'Oligotyping/visualization/oligotype_distribution_stack_bar.py' adding 'Oligotyping/visualization/oligotype_sets_distribution.py' adding 'oligotyping-3.1.data/scripts/decompose' adding 'oligotyping-3.1.data/scripts/entropy-analysis' adding 'oligotyping-3.1.data/scripts/o-bars-for-each-column.R' adding 'oligotyping-3.1.data/scripts/o-boxplots.R' adding 'oligotyping-3.1.data/scripts/o-cluster-analysis.R' adding 'oligotyping-3.1.data/scripts/o-create-GG-alignment-template-from-taxon' adding 'oligotyping-3.1.data/scripts/o-fasta-length-distribution' adding 'oligotyping-3.1.data/scripts/o-gen-dicts-for-qual-stats' adding 'oligotyping-3.1.data/scripts/o-gen-stackbar-with-sets-from-ENVIRONMENT' adding 'oligotyping-3.1.data/scripts/o-generate-consensus-from-alignment' adding 'oligotyping-3.1.data/scripts/o-generate-environment-from-matrix-counts' adding 'oligotyping-3.1.data/scripts/o-generate-exclusive-figures' adding 'oligotyping-3.1.data/scripts/o-generate-gephi-network-file' adding 'oligotyping-3.1.data/scripts/o-generate-html-output' adding 'oligotyping-3.1.data/scripts/o-generate-matching-qual-file' adding 'oligotyping-3.1.data/scripts/o-generate-matrix-files-from-ENVIRONMENT' adding 'oligotyping-3.1.data/scripts/o-generate-oligo-base-networks' adding 'oligotyping-3.1.data/scripts/o-get-reads-from-fasta' adding 'oligotyping-3.1.data/scripts/o-get-sample-info-from-fasta' adding 'oligotyping-3.1.data/scripts/o-heatmap.R' adding 'oligotyping-3.1.data/scripts/o-keep-or-remove-samples-from-fasta' adding 'oligotyping-3.1.data/scripts/o-lines-for-each-column.R' adding 'oligotyping-3.1.data/scripts/o-metaMDS-analysis-with-metadata.R' adding 'oligotyping-3.1.data/scripts/o-metaMDS-analysis.R' adding 'oligotyping-3.1.data/scripts/o-pad-with-gaps' adding 'oligotyping-3.1.data/scripts/o-populate-datasets-from-VAMPS-download' adding 'oligotyping-3.1.data/scripts/o-remove-gaps' adding 'oligotyping-3.1.data/scripts/o-sequence-distances' adding 'oligotyping-3.1.data/scripts/o-smart-trim' adding 'oligotyping-3.1.data/scripts/o-stackbar.R' adding 'oligotyping-3.1.data/scripts/o-subsample-fasta-file' adding 'oligotyping-3.1.data/scripts/o-subsample-matrix-file' adding 'oligotyping-3.1.data/scripts/o-treat-homopolymer-regions' adding 'oligotyping-3.1.data/scripts/o-trim' adding 'oligotyping-3.1.data/scripts/o-trim-uninformative-columns-from-alignment' adding 'oligotyping-3.1.data/scripts/o-visualize-distance-matrix.R' adding 'oligotyping-3.1.data/scripts/o-visualize-qual-scores-along-columns.py' adding 'oligotyping-3.1.data/scripts/oligotype' adding 'oligotyping-3.1.dist-info/COPYING' adding 'oligotyping-3.1.dist-info/METADATA' adding 'oligotyping-3.1.dist-info/WHEEL' adding 'oligotyping-3.1.dist-info/top_level.txt' adding 'oligotyping-3.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for oligotyping (pyproject.toml): finished with status 'done' Created wheel for oligotyping: filename=oligotyping-3.1-py3-none-any.whl size=451505 sha256=ace8364d24f64eda338c7a3835df1e0ffb1f0a24b8bc19534f211bf651f991bd Stored in directory: /builddir/.cache/pip/wheels/23/a3/6b/ad3317b398e953780fc4b58bfe682edc6b756c186c627ea9b9 Successfully built oligotyping + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2KNANG + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/oligotyping-3.1/.package_note-python-oligotyping-3.1-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd oligotyping-3.1 ++ ls /builddir/build/BUILD/oligotyping-3.1/pyproject-wheeldir/oligotyping-3.1-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=oligotyping==3.1 + TMPDIR=/builddir/build/BUILD/oligotyping-3.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/oligotyping-3.1/pyproject-wheeldir oligotyping==3.1 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/oligotyping-3.1/pyproject-wheeldir Processing ./pyproject-wheeldir/oligotyping-3.1-py3-none-any.whl Installing collected packages: oligotyping Successfully installed oligotyping-3.1 + '[' -d /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/__pycache__ /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/decompose /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/entropy-analysis /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-bars-for-each-column.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-boxplots.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-cluster-analysis.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-create-GG-alignment-template-from-taxon /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-fasta-length-distribution /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-gen-dicts-for-qual-stats /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-gen-stackbar-with-sets-from-ENVIRONMENT /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-consensus-from-alignment /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-environment-from-matrix-counts /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-exclusive-figures /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-gephi-network-file /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-html-output /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-matching-qual-file /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-matrix-files-from-ENVIRONMENT /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-oligo-base-networks /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-get-reads-from-fasta /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-get-sample-info-from-fasta /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-heatmap.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-keep-or-remove-samples-from-fasta /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-lines-for-each-column.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-metaMDS-analysis-with-metadata.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-metaMDS-analysis.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-pad-with-gaps /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-populate-datasets-from-VAMPS-download /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-remove-gaps /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-sequence-distances /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-smart-trim /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-stackbar.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-subsample-fasta-file /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-subsample-matrix-file /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-treat-homopolymer-regions /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-trim /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-trim-uninformative-columns-from-alignment /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-visualize-distance-matrix.R /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-visualize-qual-scores-along-columns.py /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/oligotype recursedown('/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/__pycache__') /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/decompose: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/entropy-analysis: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-bars-for-each-column.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-boxplots.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-cluster-analysis.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-create-GG-alignment-template-from-taxon: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-fasta-length-distribution: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-gen-dicts-for-qual-stats: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-gen-stackbar-with-sets-from-ENVIRONMENT: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-consensus-from-alignment: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-environment-from-matrix-counts: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-exclusive-figures: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-gephi-network-file: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-html-output: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-matching-qual-file: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-matrix-files-from-ENVIRONMENT: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-generate-oligo-base-networks: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-get-reads-from-fasta: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-get-sample-info-from-fasta: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-heatmap.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-keep-or-remove-samples-from-fasta: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-lines-for-each-column.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-metaMDS-analysis-with-metadata.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-metaMDS-analysis.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-pad-with-gaps: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-populate-datasets-from-VAMPS-download: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-remove-gaps: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-sequence-distances: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-smart-trim: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-stackbar.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-subsample-fasta-file: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-subsample-matrix-file: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-treat-homopolymer-regions: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-trim: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-trim-uninformative-columns-from-alignment: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-visualize-distance-matrix.R: no change /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/o-visualize-qual-scores-along-columns.py: updating /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/oligotype: updating + rm -rfv /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/__pycache__ removed '/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/__pycache__/o-visualize-qual-scores-along-columns.cpython-310.pyc' removed directory '/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin/__pycache__' + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 --record /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages/oligotyping-3.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.1-1.fc36 --unique-debug-suffix -3.1-1.fc36.x86_64 --unique-debug-src-base python-oligotyping-3.1-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/oligotyping-3.1 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/o-visualize-distance-matrix.R from /usr/bin/env Rscript to #!/usr/bin/Rscript *** WARNING: ./usr/bin/o-treat-homopolymer-regions is executable but has no shebang, removing executable bit mangling shebang in /usr/bin/o-stackbar.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-metaMDS-analysis.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-metaMDS-analysis-with-metadata.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-lines-for-each-column.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-heatmap.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-cluster-analysis.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-boxplots.R from /usr/bin/env Rscript to #!/usr/bin/Rscript mangling shebang in /usr/bin/o-bars-for-each-column.R from /usr/bin/env Rscript to #!/usr/bin/Rscript + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Imw8dx + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/oligotyping-3.1/.package_note-python-oligotyping-3.1-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-oligotyping 3.1-1.fc36 x86_64 + cd oligotyping-3.1 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: Oligotyping + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-oligotyping-3.1-1.fc36.noarch Provides: python-oligotyping = 3.1-1.fc36 python3-oligotyping = 3.1-1.fc36 python3.10-oligotyping = 3.1-1.fc36 python3.10dist(oligotyping) = 3.1 python3dist(oligotyping) = 3.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/Rscript /usr/bin/python3 python(abi) = 3.10 python3.10dist(biopython) python3.10dist(django) python3.10dist(illumina-utils) python3.10dist(matplotlib) python3.10dist(networkx) python3.10dist(numpy) python3.10dist(scipy) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 Wrote: /builddir/build/SRPMS/python-oligotyping-3.1-1.fc36.src.rpm Wrote: /builddir/build/RPMS/python3-oligotyping-3.1-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.0HL89c + umask 022 + cd /builddir/build/BUILD + cd oligotyping-3.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-oligotyping-3.1-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0