Mock Version: 2.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '250b5b1487274c748f17e2ae3e7406e7', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644624000 Wrote: /builddir/build/SRPMS/python-cnvfinder-1.0.0b5-1.fc37.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cd2d272867c549d9a5eb55010d2ea794', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644624000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QBwaQx + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf cnvfinder-1.0.0b5 + /usr/bin/gzip -dc /builddir/build/SOURCES/cnvfinder-1.0.0b5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd cnvfinder-1.0.0b5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5rGxCQ + umask 022 + cd /builddir/build/BUILD + cd cnvfinder-1.0.0b5 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-cnvfinder-1.0.0b5-1.fc37.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a64f636de27f436bb24d1313a7affd3b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644624000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cCMbsx + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf cnvfinder-1.0.0b5 + /usr/bin/gzip -dc /builddir/build/SOURCES/cnvfinder-1.0.0b5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd cnvfinder-1.0.0b5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.RtL3q1 + umask 022 + cd /builddir/build/BUILD + cd cnvfinder-1.0.0b5 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/cnvfinder-1.0.0b5/cnvfinder.dist-info' Handling pysam from wheel metadata: Requires-Dist Requirement not satisfied: pysam Handling pandas from wheel metadata: Requires-Dist Requirement not satisfied: pandas Handling plotly from wheel metadata: Requires-Dist Requirement not satisfied: plotly Handling numpy from wheel metadata: Requires-Dist Requirement not satisfied: numpy Handling scikit-learn from wheel metadata: Requires-Dist Requirement not satisfied: scikit-learn Handling scipy from wheel metadata: Requires-Dist Requirement not satisfied: scipy Handling numexpr from wheel metadata: Requires-Dist Requirement not satisfied: numexpr Handling matplotlib from wheel metadata: Requires-Dist Requirement not satisfied: matplotlib Handling bedhandler from wheel metadata: Requires-Dist Requirement not satisfied: bedhandler + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-cnvfinder-1.0.0b5-1.fc37.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6e07e791dc1d400bb8b0c4d7d230e737', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644624000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.EjbjSK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf cnvfinder-1.0.0b5 + /usr/bin/gzip -dc /builddir/build/SOURCES/cnvfinder-1.0.0b5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd cnvfinder-1.0.0b5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Dd3Mok + umask 022 + cd /builddir/build/BUILD + cd cnvfinder-1.0.0b5 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/cnvfinder-1.0.0b5/cnvfinder.dist-info' Handling pysam from wheel metadata: Requires-Dist Requirement satisfied: pysam (installed: pysam 0.18.0) Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling plotly from wheel metadata: Requires-Dist Requirement satisfied: plotly (installed: plotly 4.14.3) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling scikit-learn from wheel metadata: Requires-Dist Requirement satisfied: scikit-learn (installed: scikit-learn 1.0.2) Handling scipy from wheel metadata: Requires-Dist Requirement satisfied: scipy (installed: scipy 1.7.3) Handling numexpr from wheel metadata: Requires-Dist Requirement satisfied: numexpr (installed: numexpr 2.7.1) Handling matplotlib from wheel metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.5.1) Handling bedhandler from wheel metadata: Requires-Dist Requirement satisfied: bedhandler (installed: bedhandler 1.0.0b3) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-cnvfinder-1.0.0b5-1.fc37.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '97783aaac16540fea8e1e4d7dc277758', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1645111792.741229/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._0_r_a8s:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-cnvfinder.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644624000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.8DT7O4 + umask 022 + cd /builddir/build/BUILD + cd cnvfinder-1.0.0b5 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv cnvfinder.dist-info/ removed 'cnvfinder.dist-info/METADATA' removed 'cnvfinder.dist-info/top_level.txt' removed 'cnvfinder.dist-info/entry_points.txt' removed directory 'cnvfinder.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating cnvfinder.egg-info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing cnvfinder.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to cnvfinder.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to cnvfinder.egg-info/entry_points.txt HOOK STDOUT: writing requirements to cnvfinder.egg-info/requires.txt HOOK STDOUT: writing top-level names to cnvfinder.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'cnvfinder.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/cnvfinder-1.0.0b5/cnvfinder.dist-info' Handling pysam from wheel metadata: Requires-Dist Requirement satisfied: pysam (installed: pysam 0.18.0) Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling plotly from wheel metadata: Requires-Dist Requirement satisfied: plotly (installed: plotly 4.14.3) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.22.0) Handling scikit-learn from wheel metadata: Requires-Dist Requirement satisfied: scikit-learn (installed: scikit-learn 1.0.2) Handling scipy from wheel metadata: Requires-Dist Requirement satisfied: scipy (installed: scipy 1.7.3) Handling numexpr from wheel metadata: Requires-Dist Requirement satisfied: numexpr (installed: numexpr 2.7.1) Handling matplotlib from wheel metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.5.1) Handling bedhandler from wheel metadata: Requires-Dist Requirement satisfied: bedhandler (installed: bedhandler 1.0.0b3) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.htb6mn + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/cnvfinder-1.0.0b5/.package_note-python-cnvfinder-1.0.0b5-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-cnvfinder 1.0.0b5-1.fc37 x86_64 + cd cnvfinder-1.0.0b5 + mkdir -p /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/cnvfinder-1.0.0b5/.package_note-python-cnvfinder-1.0.0b5-1.fc37.x86_64.ld' + TMPDIR=/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/cnvfinder-1.0.0b5/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/cnvfinder-1.0.0b5 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/tmpik6gp89p running dist_info creating /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info writing /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/SOURCES.txt' writing manifest file '/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-modern-metadata-olk9h4zl/cnvfinder.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: cnvfinder Building wheel for cnvfinder (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/tmpe5cnlzg0 running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/cnvfinder copying cnvfinder/__init__.py -> build/lib/cnvfinder creating build/lib/cnvfinder/mphandler copying cnvfinder/mphandler/mphandler.py -> build/lib/cnvfinder/mphandler copying cnvfinder/mphandler/__init__.py -> build/lib/cnvfinder/mphandler creating build/lib/cnvfinder/bedloader copying cnvfinder/bedloader/bedloader.py -> build/lib/cnvfinder/bedloader copying cnvfinder/bedloader/__init__.py -> build/lib/cnvfinder/bedloader creating build/lib/cnvfinder/ideogram copying cnvfinder/ideogram/ideogram.py -> build/lib/cnvfinder/ideogram copying cnvfinder/ideogram/__init__.py -> build/lib/cnvfinder/ideogram creating build/lib/cnvfinder/checkmemory copying cnvfinder/checkmemory/checkmemory.py -> build/lib/cnvfinder/checkmemory copying cnvfinder/checkmemory/__init__.py -> build/lib/cnvfinder/checkmemory creating build/lib/cnvfinder/tsvparser copying cnvfinder/tsvparser/tsvparser.py -> build/lib/cnvfinder/tsvparser copying cnvfinder/tsvparser/__init__.py -> build/lib/cnvfinder/tsvparser creating build/lib/cnvfinder/utils copying cnvfinder/utils/utils.py -> build/lib/cnvfinder/utils copying cnvfinder/utils/__init__.py -> build/lib/cnvfinder/utils creating build/lib/cnvfinder/vcfhandler copying cnvfinder/vcfhandler/vcfhandler.py -> build/lib/cnvfinder/vcfhandler copying cnvfinder/vcfhandler/__init__.py -> build/lib/cnvfinder/vcfhandler creating build/lib/cnvfinder/stats copying cnvfinder/stats/stats.py -> build/lib/cnvfinder/stats copying cnvfinder/stats/__init__.py -> build/lib/cnvfinder/stats creating build/lib/cnvfinder/nrrhandler copying cnvfinder/nrrhandler/nrrhandler.py -> build/lib/cnvfinder/nrrhandler copying cnvfinder/nrrhandler/__init__.py -> build/lib/cnvfinder/nrrhandler creating build/lib/cnvfinder/cnvdetector copying cnvfinder/cnvdetector/cnvdetector.py -> build/lib/cnvfinder/cnvdetector copying cnvfinder/cnvdetector/__init__.py -> build/lib/cnvfinder/cnvdetector creating build/lib/cnvfinder/commons copying cnvfinder/commons/commons.py -> build/lib/cnvfinder/commons copying cnvfinder/commons/__init__.py -> build/lib/cnvfinder/commons creating build/lib/cnvfinder/wrapper copying cnvfinder/wrapper/argdesc.py -> build/lib/cnvfinder/wrapper copying cnvfinder/wrapper/utils.py -> build/lib/cnvfinder/wrapper copying cnvfinder/wrapper/command_line.py -> build/lib/cnvfinder/wrapper copying cnvfinder/wrapper/__init__.py -> build/lib/cnvfinder/wrapper creating build/lib/cnvfinder/graphics copying cnvfinder/graphics/graphics.py -> build/lib/cnvfinder/graphics copying cnvfinder/graphics/__init__.py -> build/lib/cnvfinder/graphics creating build/lib/cnvfinder/data copying cnvfinder/data/cytoBand.txt -> build/lib/cnvfinder/data installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/cnvfinder creating build/bdist.linux-x86_64/wheel/cnvfinder/data copying build/lib/cnvfinder/data/cytoBand.txt -> build/bdist.linux-x86_64/wheel/cnvfinder/data creating build/bdist.linux-x86_64/wheel/cnvfinder/graphics copying build/lib/cnvfinder/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/graphics copying build/lib/cnvfinder/graphics/graphics.py -> build/bdist.linux-x86_64/wheel/cnvfinder/graphics creating build/bdist.linux-x86_64/wheel/cnvfinder/wrapper copying build/lib/cnvfinder/wrapper/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/wrapper copying build/lib/cnvfinder/wrapper/command_line.py -> build/bdist.linux-x86_64/wheel/cnvfinder/wrapper copying build/lib/cnvfinder/wrapper/utils.py -> build/bdist.linux-x86_64/wheel/cnvfinder/wrapper copying build/lib/cnvfinder/wrapper/argdesc.py -> build/bdist.linux-x86_64/wheel/cnvfinder/wrapper creating build/bdist.linux-x86_64/wheel/cnvfinder/commons copying build/lib/cnvfinder/commons/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/commons copying build/lib/cnvfinder/commons/commons.py -> build/bdist.linux-x86_64/wheel/cnvfinder/commons creating build/bdist.linux-x86_64/wheel/cnvfinder/cnvdetector copying build/lib/cnvfinder/cnvdetector/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/cnvdetector copying build/lib/cnvfinder/cnvdetector/cnvdetector.py -> build/bdist.linux-x86_64/wheel/cnvfinder/cnvdetector creating build/bdist.linux-x86_64/wheel/cnvfinder/nrrhandler copying build/lib/cnvfinder/nrrhandler/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/nrrhandler copying build/lib/cnvfinder/nrrhandler/nrrhandler.py -> build/bdist.linux-x86_64/wheel/cnvfinder/nrrhandler creating build/bdist.linux-x86_64/wheel/cnvfinder/stats copying build/lib/cnvfinder/stats/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/stats copying build/lib/cnvfinder/stats/stats.py -> build/bdist.linux-x86_64/wheel/cnvfinder/stats creating build/bdist.linux-x86_64/wheel/cnvfinder/vcfhandler copying build/lib/cnvfinder/vcfhandler/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/vcfhandler copying build/lib/cnvfinder/vcfhandler/vcfhandler.py -> build/bdist.linux-x86_64/wheel/cnvfinder/vcfhandler creating build/bdist.linux-x86_64/wheel/cnvfinder/utils copying build/lib/cnvfinder/utils/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/utils copying build/lib/cnvfinder/utils/utils.py -> build/bdist.linux-x86_64/wheel/cnvfinder/utils creating build/bdist.linux-x86_64/wheel/cnvfinder/tsvparser copying build/lib/cnvfinder/tsvparser/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/tsvparser copying build/lib/cnvfinder/tsvparser/tsvparser.py -> build/bdist.linux-x86_64/wheel/cnvfinder/tsvparser creating build/bdist.linux-x86_64/wheel/cnvfinder/checkmemory copying build/lib/cnvfinder/checkmemory/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/checkmemory copying build/lib/cnvfinder/checkmemory/checkmemory.py -> build/bdist.linux-x86_64/wheel/cnvfinder/checkmemory creating build/bdist.linux-x86_64/wheel/cnvfinder/ideogram copying build/lib/cnvfinder/ideogram/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/ideogram copying build/lib/cnvfinder/ideogram/ideogram.py -> build/bdist.linux-x86_64/wheel/cnvfinder/ideogram creating build/bdist.linux-x86_64/wheel/cnvfinder/bedloader copying build/lib/cnvfinder/bedloader/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/bedloader copying build/lib/cnvfinder/bedloader/bedloader.py -> build/bdist.linux-x86_64/wheel/cnvfinder/bedloader creating build/bdist.linux-x86_64/wheel/cnvfinder/mphandler copying build/lib/cnvfinder/mphandler/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder/mphandler copying build/lib/cnvfinder/mphandler/mphandler.py -> build/bdist.linux-x86_64/wheel/cnvfinder/mphandler copying build/lib/cnvfinder/__init__.py -> build/bdist.linux-x86_64/wheel/cnvfinder running install_egg_info running egg_info creating cnvfinder.egg-info writing cnvfinder.egg-info/PKG-INFO writing dependency_links to cnvfinder.egg-info/dependency_links.txt writing entry points to cnvfinder.egg-info/entry_points.txt writing requirements to cnvfinder.egg-info/requires.txt writing top-level names to cnvfinder.egg-info/top_level.txt writing manifest file 'cnvfinder.egg-info/SOURCES.txt' reading manifest file 'cnvfinder.egg-info/SOURCES.txt' writing manifest file 'cnvfinder.egg-info/SOURCES.txt' Copying cnvfinder.egg-info to build/bdist.linux-x86_64/wheel/cnvfinder-1.0.0b5-py3.10.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/cnvfinder-1.0.0b5.dist-info/WHEEL creating '/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir/pip-wheel-e05ia9qh/tmpo7yi6f25/cnvfinder-1.0.0b5-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'cnvfinder/__init__.py' adding 'cnvfinder/bedloader/__init__.py' adding 'cnvfinder/bedloader/bedloader.py' adding 'cnvfinder/checkmemory/__init__.py' adding 'cnvfinder/checkmemory/checkmemory.py' adding 'cnvfinder/cnvdetector/__init__.py' adding 'cnvfinder/cnvdetector/cnvdetector.py' adding 'cnvfinder/commons/__init__.py' adding 'cnvfinder/commons/commons.py' adding 'cnvfinder/data/cytoBand.txt' adding 'cnvfinder/graphics/__init__.py' adding 'cnvfinder/graphics/graphics.py' adding 'cnvfinder/ideogram/__init__.py' adding 'cnvfinder/ideogram/ideogram.py' adding 'cnvfinder/mphandler/__init__.py' adding 'cnvfinder/mphandler/mphandler.py' adding 'cnvfinder/nrrhandler/__init__.py' adding 'cnvfinder/nrrhandler/nrrhandler.py' adding 'cnvfinder/stats/__init__.py' adding 'cnvfinder/stats/stats.py' adding 'cnvfinder/tsvparser/__init__.py' adding 'cnvfinder/tsvparser/tsvparser.py' adding 'cnvfinder/utils/__init__.py' adding 'cnvfinder/utils/utils.py' adding 'cnvfinder/vcfhandler/__init__.py' adding 'cnvfinder/vcfhandler/vcfhandler.py' adding 'cnvfinder/wrapper/__init__.py' adding 'cnvfinder/wrapper/argdesc.py' adding 'cnvfinder/wrapper/command_line.py' adding 'cnvfinder/wrapper/utils.py' adding 'cnvfinder-1.0.0b5.dist-info/METADATA' adding 'cnvfinder-1.0.0b5.dist-info/WHEEL' adding 'cnvfinder-1.0.0b5.dist-info/entry_points.txt' adding 'cnvfinder-1.0.0b5.dist-info/top_level.txt' adding 'cnvfinder-1.0.0b5.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for cnvfinder (pyproject.toml): finished with status 'done' Created wheel for cnvfinder: filename=cnvfinder-1.0.0b5-py3-none-any.whl size=55459 sha256=e387423a8dbcfa5ef2278c7251830f17fb9c27022c5c261d337552a6aa174b43 Stored in directory: /builddir/.cache/pip/wheels/0e/c5/da/4b70c2d27560174267aa9025d709e9a57dd290433ba2dde7ba Successfully built cnvfinder + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zee5Y3 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 ++ dirname /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/cnvfinder-1.0.0b5/.package_note-python-cnvfinder-1.0.0b5-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd cnvfinder-1.0.0b5 ++ ls /builddir/build/BUILD/cnvfinder-1.0.0b5/pyproject-wheeldir/cnvfinder-1.0.0b5-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=cnvfinder==1.0.0b5 + TMPDIR=/builddir/build/BUILD/cnvfinder-1.0.0b5/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/cnvfinder-1.0.0b5/pyproject-wheeldir cnvfinder==1.0.0b5 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/cnvfinder-1.0.0b5/pyproject-wheeldir Processing ./pyproject-wheeldir/cnvfinder-1.0.0b5-py3-none-any.whl Installing collected packages: cnvfinder Creating /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin/cnvfinder to 755 Successfully installed cnvfinder-1.0.0b5 + '[' -d /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin/cnvfinder /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin/cnvfinder: updating + rm -rfv /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 --record /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages/cnvfinder-1.0.0b5.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.0b5-1.fc37 --unique-debug-suffix -1.0.0b5-1.fc37.x86_64 --unique-debug-src-base python-cnvfinder-1.0.0b5-1.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/cnvfinder-1.0.0b5 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10 using python3.10 /usr/lib/python3.10/site-packages/cnvfinder/utils/utils.py:236: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/site-packages/cnvfinder/utils/utils.py:236: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/site-packages/cnvfinder/vcfhandler/vcfhandler.py:327: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/site-packages/cnvfinder/vcfhandler/vcfhandler.py:329: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/site-packages/cnvfinder/vcfhandler/vcfhandler.py:327: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/site-packages/cnvfinder/vcfhandler/vcfhandler.py:329: SyntaxWarning: "is" with a literal. Did you mean "=="? + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.23G3VI + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/cnvfinder-1.0.0b5/.package_note-python-cnvfinder-1.0.0b5-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh python-cnvfinder 1.0.0b5-1.fc37 x86_64 + cd cnvfinder-1.0.0b5 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: cnvfinder + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-cnvfinder-1.0.0b5-1.fc37.noarch Provides: python-cnvfinder = 1.0.0b5-1.fc37 python3-cnvfinder = 1.0.0b5-1.fc37 python3.10-cnvfinder = 1.0.0b5-1.fc37 python3.10dist(cnvfinder) = 1~b5 python3dist(cnvfinder) = 1~b5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.10 python3.10dist(bedhandler) python3.10dist(matplotlib) python3.10dist(numexpr) python3.10dist(numpy) python3.10dist(pandas) python3.10dist(plotly) python3.10dist(pysam) python3.10dist(scikit-learn) python3.10dist(scipy) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 Wrote: /builddir/build/SRPMS/python-cnvfinder-1.0.0b5-1.fc37.src.rpm Wrote: /builddir/build/RPMS/python3-cnvfinder-1.0.0b5-1.fc37.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.HHAAm0 + umask 022 + cd /builddir/build/BUILD + cd cnvfinder-1.0.0b5 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-cnvfinder-1.0.0b5-1.fc37.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0