Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a8655f44211e4541a007198b842541d7', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1681344000 Wrote: /builddir/build/SRPMS/python-humann-3.7-1.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1a6838fae348417ba37f1a1b81acb84d', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1681344000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.I2qgyU + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf humann-3.7 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/humann-3.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd humann-3.7 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.CDQHot + umask 022 + cd /builddir/build/BUILD + cd humann-3.7 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/humann-3.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/humann-3.7/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/humann-3.7/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-humann-3.7-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2dd1661974d84591957087d0a9ef26c6', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1681344000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.K1SKLl + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf humann-3.7 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/humann-3.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd humann-3.7 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.iunJgS + umask 022 + cd /builddir/build/BUILD + cd humann-3.7 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/humann-3.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/humann-3.7/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/humann-3.7/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.6.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' HOOK STDOUT: running egg_info HOOK STDOUT: writing humann.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'humann.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 684, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('humann.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 747, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 755, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 273, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'humann.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 761, in write_entries cmd.write_or_delete_file('entry points', filename, defn, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 273, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('entry points', 'humann.egg-info/entry_points.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 743, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'humann.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 570, in run self.add_defaults() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 615, in add_defaults self.read_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('humann.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 572, in run self.read_template() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 628, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 578, in run self.write_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 594, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'humann.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 102, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/humann-3.7/humann-3.7.dist-info'" Arguments: () + rm -rfv humann-3.7.dist-info/ removed 'humann-3.7.dist-info/LICENSE' removed 'humann-3.7.dist-info/METADATA' removed 'humann-3.7.dist-info/entry_points.txt' removed 'humann-3.7.dist-info/top_level.txt' removed directory 'humann-3.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-humann-3.7-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9fcebc1795624e149e337550f739444e', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1681427528.212593/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.06g8k9_e:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-humann.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1681344000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.K8Nubz + umask 022 + cd /builddir/build/BUILD + cd humann-3.7 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/humann-3.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/humann-3.7/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/humann-3.7/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.6.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' HOOK STDOUT: running egg_info HOOK STDOUT: writing humann.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'humann.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 684, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('humann.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 747, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 755, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 273, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'humann.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 761, in write_entries cmd.write_or_delete_file('entry points', filename, defn, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 273, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('entry points', 'humann.egg-info/entry_points.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 311, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 743, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 289, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'humann.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 570, in run self.add_defaults() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 615, in add_defaults self.read_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('humann.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 572, in run self.read_template() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 628, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 98, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 578, in run self.write_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 594, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'humann.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 485, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 598, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 102, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/humann-3.7/humann-3.7.dist-info'" Arguments: () + rm -rfv humann-3.7.dist-info/ removed 'humann-3.7.dist-info/LICENSE' removed 'humann-3.7.dist-info/METADATA' removed 'humann-3.7.dist-info/top_level.txt' removed 'humann-3.7.dist-info/entry_points.txt' removed directory 'humann-3.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BNB3st + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd humann-3.7 + mkdir -p /builddir/build/BUILD/humann-3.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/humann-3.7/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/humann-3.7/pyproject-wheeldir Processing /builddir/build/BUILD/humann-3.7 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info writing /builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/entry_points.txt writing top-level names to /builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-modern-metadata-vtij7ps6/humann-3.7.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: humann Building wheel for humann (pyproject.toml): started Running command Building wheel for humann (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/humann copying humann/utilities.py -> build/lib/humann copying humann/store.py -> build/lib/humann copying humann/humann.py -> build/lib/humann copying humann/config.py -> build/lib/humann copying humann/check.py -> build/lib/humann copying humann/__init__.py -> build/lib/humann creating build/lib/humann/tools copying humann/tools/util.py -> build/lib/humann/tools copying humann/tools/strain_profiler.py -> build/lib/humann/tools copying humann/tools/split_table.py -> build/lib/humann/tools copying humann/tools/split_stratified_table.py -> build/lib/humann/tools copying humann/tools/rna_dna_norm.py -> build/lib/humann/tools copying humann/tools/renorm_table.py -> build/lib/humann/tools copying humann/tools/rename_table.py -> build/lib/humann/tools copying humann/tools/regroup_table.py -> build/lib/humann/tools copying humann/tools/reduce_table.py -> build/lib/humann/tools copying humann/tools/merge_abundance.py -> build/lib/humann/tools copying humann/tools/join_tables.py -> build/lib/humann/tools copying humann/tools/infer_taxonomy.py -> build/lib/humann/tools copying humann/tools/humann_humann1_kegg.py -> build/lib/humann/tools copying humann/tools/humann_expand_results_taxonomy.py -> build/lib/humann/tools copying humann/tools/humann_databases.py -> build/lib/humann/tools copying humann/tools/humann_config.py -> build/lib/humann/tools copying humann/tools/humann_benchmark.py -> build/lib/humann/tools copying humann/tools/humann_barplot.py -> build/lib/humann/tools copying humann/tools/humann_associate.py -> build/lib/humann/tools copying humann/tools/genefamilies_genus_level.py -> build/lib/humann/tools copying humann/tools/expand_cluster.py -> build/lib/humann/tools copying humann/tools/build_custom_database.py -> build/lib/humann/tools copying humann/tools/__init__.py -> build/lib/humann/tools creating build/lib/humann/tests copying humann/tests/utils.py -> build/lib/humann/tests copying humann/tests/humann_test.py -> build/lib/humann/tests copying humann/tests/functional_tests_tools.py -> build/lib/humann/tests copying humann/tests/functional_tests_humann.py -> build/lib/humann/tests copying humann/tests/functional_tests_biom_tools.py -> build/lib/humann/tests copying humann/tests/functional_tests_biom_humann.py -> build/lib/humann/tests copying humann/tests/cfg.py -> build/lib/humann/tests copying humann/tests/basic_tests_utilities.py -> build/lib/humann/tests copying humann/tests/basic_tests_store.py -> build/lib/humann/tests copying humann/tests/basic_tests_quantify_modules.py -> build/lib/humann/tests copying humann/tests/basic_tests_nucleotide_search.py -> build/lib/humann/tests copying humann/tests/advanced_tests_utilities.py -> build/lib/humann/tests copying humann/tests/advanced_tests_translated_search.py -> build/lib/humann/tests copying humann/tests/advanced_tests_store.py -> build/lib/humann/tests copying humann/tests/advanced_tests_quantify_modules.py -> build/lib/humann/tests copying humann/tests/advanced_tests_quantify_families.py -> build/lib/humann/tests copying humann/tests/advanced_tests_nucleotide_search.py -> build/lib/humann/tests copying humann/tests/advanced_tests_blastx_coverage.py -> build/lib/humann/tests copying humann/tests/__init__.py -> build/lib/humann/tests creating build/lib/humann/search copying humann/search/translated.py -> build/lib/humann/search copying humann/search/prescreen.py -> build/lib/humann/search copying humann/search/pick_frames.py -> build/lib/humann/search copying humann/search/nucleotide.py -> build/lib/humann/search copying humann/search/blastx_coverage.py -> build/lib/humann/search copying humann/search/__init__.py -> build/lib/humann/search creating build/lib/humann/quantify copying humann/quantify/xipe.py -> build/lib/humann/quantify copying humann/quantify/modules.py -> build/lib/humann/quantify copying humann/quantify/families.py -> build/lib/humann/quantify copying humann/quantify/chi2cdf.py -> build/lib/humann/quantify copying humann/quantify/__init__.py -> build/lib/humann/quantify copying humann/quantify/MinPath12hmp.py -> build/lib/humann/quantify copying humann/humann.cfg -> build/lib/humann creating build/lib/humann/data creating build/lib/humann/data/pathways copying humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann/data/pathways copying humann/data/pathways/unipathway_pathways -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways_structured_v24 -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways_structured_filtered_v24 -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways_structured -> build/lib/humann/data/pathways copying humann/data/pathways/metacyc_pathways -> build/lib/humann/data/pathways creating build/lib/humann/data/misc copying humann/data/misc/vOct22_SGB_mapping.tsv -> build/lib/humann/data/misc copying humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv -> build/lib/humann/data/misc copying humann/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann/data/misc copying humann/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_pfam_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_level4ec_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_ko_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/map_go_name.txt.gz -> build/lib/humann/data/misc copying humann/data/misc/README.txt -> build/lib/humann/data/misc copying humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann/data/misc creating build/lib/humann/data/uniref_DEMO copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/lib/humann/data/uniref_DEMO copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/lib/humann/data/uniref_DEMO creating build/lib/humann/data/chocophlan_DEMO copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz -> build/lib/humann/data/chocophlan_DEMO copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz -> build/lib/humann/data/chocophlan_DEMO creating build/lib/humann/tests/data copying humann/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann/tests/data copying humann/tests/data/usearch_output.tsv -> build/lib/humann/tests/data copying humann/tests/data/test_pathways_results.tsv -> build/lib/humann/tests/data copying humann/tests/data/test_pathways_flat.tsv -> build/lib/humann/tests/data copying humann/tests/data/test_pathways.dat -> build/lib/humann/tests/data copying humann/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann/tests/data copying humann/tests/data/reactions.tsv -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann/tests/data copying humann/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_genefamilies.biom -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann/tests/data copying humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann/tests/data copying humann/tests/data/id_mapping_gene_table.tsv -> build/lib/humann/tests/data copying humann/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann/tests/data copying humann/tests/data/id_mapping.tsv -> build/lib/humann/tests/data copying humann/tests/data/genefamilies_biom_match.tsv -> build/lib/humann/tests/data copying humann/tests/data/genefamilies.biom -> build/lib/humann/tests/data copying humann/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann/tests/data copying humann/tests/data/gene_families.tsv -> build/lib/humann/tests/data copying humann/tests/data/file_without_header_with_tags.sam -> build/lib/humann/tests/data copying humann/tests/data/file_without_header.sam -> build/lib/humann/tests/data copying humann/tests/data/file_with_header.sam -> build/lib/humann/tests/data copying humann/tests/data/file_space_identifier.fastq -> build/lib/humann/tests/data copying humann/tests/data/file_single_line_sequences.fasta -> build/lib/humann/tests/data copying humann/tests/data/file_no_space_identifier.fastq -> build/lib/humann/tests/data copying humann/tests/data/file.fastq -> build/lib/humann/tests/data copying humann/tests/data/file.fasta -> build/lib/humann/tests/data copying humann/tests/data/file.bam -> build/lib/humann/tests/data copying humann/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann/tests/data copying humann/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann/tests/data copying humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann/tests/data copying humann/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann/tests/data copying humann/tests/data/demo_genefamilies.tsv -> build/lib/humann/tests/data copying humann/tests/data/demo_genefamilies.biom -> build/lib/humann/tests/data copying humann/tests/data/demo.sam -> build/lib/humann/tests/data copying humann/tests/data/demo.m8 -> build/lib/humann/tests/data copying humann/tests/data/demo.fastq -> build/lib/humann/tests/data copying humann/tests/data/demo.fasta -> build/lib/humann/tests/data copying humann/tests/data/convert_file_pick_frames.fasta -> build/lib/humann/tests/data copying humann/tests/data/convert_file_multiline.fasta -> build/lib/humann/tests/data copying humann/tests/data/convert_file_at_character.fastq -> build/lib/humann/tests/data copying humann/tests/data/convert_file.fastq -> build/lib/humann/tests/data copying humann/tests/data/convert_file.fasta -> build/lib/humann/tests/data copying humann/tests/data/annotations.sam -> build/lib/humann/tests/data copying humann/tests/data/annotations.m8 -> build/lib/humann/tests/data copying humann/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann/tests/data creating build/lib/humann/tests/data/tooltest-strain_profiler copying humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann/tests/data/tooltest-strain_profiler copying humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann/tests/data/tooltest-strain_profiler copying humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler copying humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler creating build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann/tests/data/tooltest-rna_dna_norm creating build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann/tests/data/tooltest-renorm_table copying humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann/tests/data/tooltest-renorm_table creating build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-rename_table copying humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann/tests/data/tooltest-rename_table creating build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann/tests/data/tooltest-regroup_table copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table creating build/lib/humann/tests/data/tooltest-merge_abundance_tables copying humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables copying humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables copying humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann/tests/data/tooltest-merge_abundance_tables copying humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables copying humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables creating build/lib/humann/tests/data/tooltest-infer_taxonomy copying humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann/tests/data/tooltest-infer_taxonomy copying humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy copying humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy installing to build/bdist.linux-x86_64/wheel running install Installing minpath. Downloading http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz WARNING: Unable to download http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz WARNING: Unable to extract minpath. running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/humann creating build/bdist.linux-x86_64/wheel/humann/data creating build/bdist.linux-x86_64/wheel/humann/data/chocophlan_DEMO copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz -> build/bdist.linux-x86_64/wheel/humann/data/chocophlan_DEMO copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz -> build/bdist.linux-x86_64/wheel/humann/data/chocophlan_DEMO creating build/bdist.linux-x86_64/wheel/humann/data/uniref_DEMO copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/bdist.linux-x86_64/wheel/humann/data/uniref_DEMO copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/bdist.linux-x86_64/wheel/humann/data/uniref_DEMO creating build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/README.txt -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_go_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_ko_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv -> build/bdist.linux-x86_64/wheel/humann/data/misc copying build/lib/humann/data/misc/vOct22_SGB_mapping.tsv -> build/bdist.linux-x86_64/wheel/humann/data/misc creating build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways_structured -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways_structured_filtered_v24 -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways_structured_v24 -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/unipathway_pathways -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-x86_64/wheel/humann/data/pathways copying build/lib/humann/humann.cfg -> build/bdist.linux-x86_64/wheel/humann creating build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/MinPath12hmp.py -> build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/__init__.py -> build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/chi2cdf.py -> build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/families.py -> build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/modules.py -> build/bdist.linux-x86_64/wheel/humann/quantify copying build/lib/humann/quantify/xipe.py -> build/bdist.linux-x86_64/wheel/humann/quantify creating build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/__init__.py -> build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/blastx_coverage.py -> build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/nucleotide.py -> build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/pick_frames.py -> build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/prescreen.py -> build/bdist.linux-x86_64/wheel/humann/search copying build/lib/humann/search/translated.py -> build/bdist.linux-x86_64/wheel/humann/search creating build/bdist.linux-x86_64/wheel/humann/tests creating build/bdist.linux-x86_64/wheel/humann/tests/data creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-infer_taxonomy copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-infer_taxonomy copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-infer_taxonomy copying build/lib/humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-infer_taxonomy creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-merge_abundance_tables creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-regroup_table creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rename_table creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-renorm_table creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-rna_dna_norm creating build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-strain_profiler copying build/lib/humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-strain_profiler copying build/lib/humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-strain_profiler copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-strain_profiler copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-x86_64/wheel/humann/tests/data/tooltest-strain_profiler copying build/lib/humann/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/annotations.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/annotations.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/convert_file.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/convert_file.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/convert_file_at_character.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/convert_file_multiline.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file.bam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_space_identifier.fastq -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_with_header.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_without_header.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/gene_families.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/id_mapping.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/reactions.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/test_pathways.dat -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/test_pathways_flat.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/test_pathways_results.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/usearch_output.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-x86_64/wheel/humann/tests/data copying build/lib/humann/tests/__init__.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_quantify_families.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_store.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_translated_search.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/advanced_tests_utilities.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/basic_tests_quantify_modules.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/basic_tests_store.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/basic_tests_utilities.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/cfg.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/functional_tests_biom_humann.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/functional_tests_biom_tools.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/functional_tests_humann.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/functional_tests_tools.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/humann_test.py -> build/bdist.linux-x86_64/wheel/humann/tests copying build/lib/humann/tests/utils.py -> build/bdist.linux-x86_64/wheel/humann/tests creating build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/__init__.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/build_custom_database.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/expand_cluster.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/genefamilies_genus_level.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_associate.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_barplot.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_benchmark.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_config.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_databases.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_expand_results_taxonomy.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/humann_humann1_kegg.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/infer_taxonomy.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/join_tables.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/merge_abundance.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/reduce_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/regroup_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/rename_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/renorm_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/rna_dna_norm.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/split_stratified_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/split_table.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/strain_profiler.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/tools/util.py -> build/bdist.linux-x86_64/wheel/humann/tools copying build/lib/humann/__init__.py -> build/bdist.linux-x86_64/wheel/humann copying build/lib/humann/check.py -> build/bdist.linux-x86_64/wheel/humann copying build/lib/humann/config.py -> build/bdist.linux-x86_64/wheel/humann copying build/lib/humann/humann.py -> build/bdist.linux-x86_64/wheel/humann copying build/lib/humann/store.py -> build/bdist.linux-x86_64/wheel/humann copying build/lib/humann/utilities.py -> build/bdist.linux-x86_64/wheel/humann running install_egg_info running egg_info writing humann.egg-info/PKG-INFO writing dependency_links to humann.egg-info/dependency_links.txt writing entry points to humann.egg-info/entry_points.txt writing top-level names to humann.egg-info/top_level.txt reading manifest file 'humann.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann/tools/README.txt' warning: no files found matching 'humann/maintenance/README.md' warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann/quantify/MinPath' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' adding license file 'LICENSE' writing manifest file 'humann.egg-info/SOURCES.txt' Copying humann.egg-info to build/bdist.linux-x86_64/wheel/humann-3.7-py3.11.egg-info running install_scripts Installing latest glpk. Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz WARNING: Unable to download http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz WARNING: Unable to extract glpk. WARNING: glpk was not downloaded. WARNING: Please install gcc. WARNING: Please install make. WARNING: Errors installing new glpk version. Installing diamond. Downloading http://github.com/bbuchfink/diamond/releases/download/v2.0.15/diamond-linux64.tar.gz WARNING: Unable to download http://github.com/bbuchfink/diamond/releases/download/v2.0.15/diamond-linux64.tar.gz WARNING: Unable to extract diamond. [Errno 2] No such file or directory: '/builddir/build/BUILD/humann-3.7/diamond_download_0ycvc44b/diamond' WARNING: Unable to install diamond. Please install diamond. Installing bowtie2. Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip WARNING: Unable to download http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip WARNING: Unable to extract bowtie2. WARNING: Bowtie2 files not found. WARNING: Unable to install bowtie2. Please install bowtie2. creating build/bdist.linux-x86_64/wheel/humann-3.7.dist-info/WHEEL creating '/builddir/build/BUILD/humann-3.7/.pyproject-builddir/pip-wheel-b10966i4/.tmp-z6y1pw24/humann-3.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'humann/__init__.py' adding 'humann/check.py' adding 'humann/config.py' adding 'humann/humann.cfg' adding 'humann/humann.py' adding 'humann/store.py' adding 'humann/utilities.py' adding 'humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz' adding 'humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz' adding 'humann/data/misc/KeggOrgId2OrgNameTable.txt' adding 'humann/data/misc/README.txt' adding 'humann/data/misc/map_go_name.txt.gz' adding 'humann/data/misc/map_kegg-mdl_name.txt.gz' adding 'humann/data/misc/map_kegg-pwy_name.txt.gz' adding 'humann/data/misc/map_ko_name.txt.gz' adding 'humann/data/misc/map_level4ec_name.txt.gz' adding 'humann/data/misc/map_metacyc-pwy_name.txt.gz' adding 'humann/data/misc/map_metacyc-rxn_name.txt.gz' adding 'humann/data/misc/map_pfam_name.txt.gz' adding 'humann/data/misc/map_transporter_uniref50.txt.gz' adding 'humann/data/misc/map_uniref50_name.txt.bz2' adding 'humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv' adding 'humann/data/misc/vOct22_SGB_mapping.tsv' adding 'humann/data/pathways/metacyc_pathways' adding 'humann/data/pathways/metacyc_pathways_structured' adding 'humann/data/pathways/metacyc_pathways_structured_filtered' adding 'humann/data/pathways/metacyc_pathways_structured_filtered_v24' adding 'humann/data/pathways/metacyc_pathways_structured_v24' adding 'humann/data/pathways/metacyc_pathways_to_organisms' adding 'humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2' adding 'humann/data/pathways/unipathway_pathways' adding 'humann/data/pathways/unipathway_uniprots.uniref.bz2' adding 'humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd' adding 'humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna' adding 'humann/quantify/MinPath12hmp.py' adding 'humann/quantify/__init__.py' adding 'humann/quantify/chi2cdf.py' adding 'humann/quantify/families.py' adding 'humann/quantify/modules.py' adding 'humann/quantify/xipe.py' adding 'humann/search/__init__.py' adding 'humann/search/blastx_coverage.py' adding 'humann/search/nucleotide.py' adding 'humann/search/pick_frames.py' adding 'humann/search/prescreen.py' adding 'humann/search/translated.py' adding 'humann/tests/__init__.py' adding 'humann/tests/advanced_tests_blastx_coverage.py' adding 'humann/tests/advanced_tests_nucleotide_search.py' adding 'humann/tests/advanced_tests_quantify_families.py' adding 'humann/tests/advanced_tests_quantify_modules.py' adding 'humann/tests/advanced_tests_store.py' adding 'humann/tests/advanced_tests_translated_search.py' adding 'humann/tests/advanced_tests_utilities.py' adding 'humann/tests/basic_tests_nucleotide_search.py' adding 'humann/tests/basic_tests_quantify_modules.py' adding 'humann/tests/basic_tests_store.py' adding 'humann/tests/basic_tests_utilities.py' adding 'humann/tests/cfg.py' adding 'humann/tests/functional_tests_biom_humann.py' adding 'humann/tests/functional_tests_biom_tools.py' adding 'humann/tests/functional_tests_humann.py' adding 'humann/tests/functional_tests_tools.py' adding 'humann/tests/humann_test.py' adding 'humann/tests/utils.py' adding 'humann/tests/data/2_aligned_3_unaligned.sam' adding 'humann/tests/data/annotations.m8' adding 'humann/tests/data/annotations.sam' adding 'humann/tests/data/convert_file.fasta' adding 'humann/tests/data/convert_file.fastq' adding 'humann/tests/data/convert_file_at_character.fastq' adding 'humann/tests/data/convert_file_multiline.fasta' adding 'humann/tests/data/convert_file_pick_frames.fasta' adding 'humann/tests/data/demo.fasta' adding 'humann/tests/data/demo.fastq' adding 'humann/tests/data/demo.m8' adding 'humann/tests/data/demo.sam' adding 'humann/tests/data/demo_genefamilies.biom' adding 'humann/tests/data/demo_genefamilies.tsv' adding 'humann/tests/data/demo_genefamilies_with_names.tsv' adding 'humann/tests/data/demo_metaphlan_bugs_list.tsv' adding 'humann/tests/data/demo_pathabundance_with_names.tsv' adding 'humann/tests/data/demo_pathcoverage_with_names.tsv' adding 'humann/tests/data/file.bam' adding 'humann/tests/data/file.fasta' adding 'humann/tests/data/file.fastq' adding 'humann/tests/data/file_no_space_identifier.fastq' adding 'humann/tests/data/file_single_line_sequences.fasta' adding 'humann/tests/data/file_space_identifier.fastq' adding 'humann/tests/data/file_with_header.sam' adding 'humann/tests/data/file_without_header.sam' adding 'humann/tests/data/file_without_header_with_tags.sam' adding 'humann/tests/data/gene_families.tsv' adding 'humann/tests/data/gene_families_uniref50_with_names.tsv' adding 'humann/tests/data/genefamilies.biom' adding 'humann/tests/data/genefamilies_biom_match.tsv' adding 'humann/tests/data/id_mapping.tsv' adding 'humann/tests/data/id_mapping_coverage_filter.tsv' adding 'humann/tests/data/id_mapping_gene_table.tsv' adding 'humann/tests/data/multi_sample_biom_genefamilies_sample1.biom' adding 'humann/tests/data/multi_sample_biom_genefamilies_sample2.biom' adding 'humann/tests/data/multi_sample_genefamilies.biom' adding 'humann/tests/data/multi_sample_genefamilies.tsv' adding 'humann/tests/data/multi_sample_genefamilies_sample1.tsv' adding 'humann/tests/data/multi_sample_genefamilies_sample2.tsv' adding 'humann/tests/data/rapsearch2_output_with_header.m8' adding 'humann/tests/data/rapsearch2_output_with_header_no_log.m8' adding 'humann/tests/data/rapsearch2_output_without_header.m8' adding 'humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8' adding 'humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8' adding 'humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8' adding 'humann/tests/data/reactions.tsv' adding 'humann/tests/data/small_map_uniref50_name.txt.gz' adding 'humann/tests/data/test_pathways.dat' adding 'humann/tests/data/test_pathways_flat.tsv' adding 'humann/tests/data/test_pathways_results.tsv' adding 'humann/tests/data/usearch_output.tsv' adding 'humann/tests/data/usearch_with_uniref50_output.tsv' adding 'humann/tests/data/tooltest-infer_taxonomy/genes.tsv' adding 'humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv' adding 'humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh' adding 'humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv' adding 'humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv' adding 'humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh' adding 'humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv' adding 'humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt' adding 'humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt' adding 'humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-custom.sh' adding 'humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz' adding 'humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh' adding 'humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-input.biom' adding 'humann/tests/data/tooltest-rename_table/rename_table-input.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt' adding 'humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-command.sh' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-input.biom' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-input.txt' adding 'humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv' adding 'humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv' adding 'humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv' adding 'humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv' adding 'humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh' adding 'humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt' adding 'humann/tools/__init__.py' adding 'humann/tools/build_custom_database.py' adding 'humann/tools/expand_cluster.py' adding 'humann/tools/genefamilies_genus_level.py' adding 'humann/tools/humann_associate.py' adding 'humann/tools/humann_barplot.py' adding 'humann/tools/humann_benchmark.py' adding 'humann/tools/humann_config.py' adding 'humann/tools/humann_databases.py' adding 'humann/tools/humann_expand_results_taxonomy.py' adding 'humann/tools/humann_humann1_kegg.py' adding 'humann/tools/infer_taxonomy.py' adding 'humann/tools/join_tables.py' adding 'humann/tools/merge_abundance.py' adding 'humann/tools/reduce_table.py' adding 'humann/tools/regroup_table.py' adding 'humann/tools/rename_table.py' adding 'humann/tools/renorm_table.py' adding 'humann/tools/rna_dna_norm.py' adding 'humann/tools/split_stratified_table.py' adding 'humann/tools/split_table.py' adding 'humann/tools/strain_profiler.py' adding 'humann/tools/util.py' adding 'humann-3.7.dist-info/LICENSE' adding 'humann-3.7.dist-info/METADATA' adding 'humann-3.7.dist-info/WHEEL' adding 'humann-3.7.dist-info/entry_points.txt' adding 'humann-3.7.dist-info/top_level.txt' adding 'humann-3.7.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for humann (pyproject.toml): finished with status 'done' Created wheel for humann: filename=humann-3.7-py3-none-any.whl size=105234139 sha256=da25a77a5f0b4728b0b0654e96fb52cdc57ac34727204d3c5e499b98dcbd327c Stored in directory: /builddir/.cache/pip/wheels/7e/8c/10/a15a3ebacfe20b8e63e777c5e7d5382b80bbd6e8797abaa7b2 Successfully built humann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1G9ndY + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd humann-3.7 ++ ls /builddir/build/BUILD/humann-3.7/pyproject-wheeldir/humann-3.7-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=humann==3.7 + TMPDIR=/builddir/build/BUILD/humann-3.7/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/humann-3.7/pyproject-wheeldir humann==3.7 Using pip 23.0.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/humann-3.7/pyproject-wheeldir Processing ./pyproject-wheeldir/humann-3.7-py3-none-any.whl Installing collected packages: humann Creating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3 to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3_databases to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_barplot to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_benchmark to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_build_custom_database to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_config to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_databases to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_expand_cluster to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_genefamilies_genus_level to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_infer_taxonomy to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_join_tables to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_reduce_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_regroup_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_rename_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_renorm_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_stratified_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_test to 755 changing mode of /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_unpack_pathways to 755 Successfully installed humann-3.7 + '[' -d /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3 /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3_databases /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_barplot /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_benchmark /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_build_custom_database /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_config /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_databases /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_expand_cluster /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_genefamilies_genus_level /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_infer_taxonomy /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_join_tables /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_reduce_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_regroup_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_rename_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_renorm_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_stratified_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_table /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_test /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_unpack_pathways /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann3_databases: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_barplot: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_benchmark: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_build_custom_database: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_config: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_databases: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_expand_cluster: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_genefamilies_genus_level: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_infer_taxonomy: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_join_tables: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_reduce_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_regroup_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_rename_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_renorm_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_stratified_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_split_table: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_test: updating /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/humann_unpack_pathways: updating + rm -rfv /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/humann-3.7.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 --record /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/RECORD --output /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages/humann-3.7.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.7-1.fc39 --unique-debug-suffix -3.7-1.fc39.x86_64 --unique-debug-src-base python-humann-3.7-1.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/humann-3.7 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.dTh0CE + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd humann-3.7 + '[' '!' -f /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-humann-3.7-1.fc39.x86_64-pyproject-modules -t Check import: humann + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-humann-3.7-1.fc39.noarch Provides: python-humann = 3.7-1.fc39 python3-humann = 3.7-1.fc39 python3.11-humann = 3.7-1.fc39 python3.11dist(humann) = 3.7 python3dist(humann) = 3.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.11 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-humann-3.7-1.fc39.src.rpm Wrote: /builddir/build/RPMS/python3-humann-3.7-1.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.vFYJxL + umask 022 + cd /builddir/build/BUILD + cd humann-3.7 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-humann-3.7-1.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.ZBVIuj + umask 022 + cd /builddir/build/BUILD + rm -rf humann-3.7 humann-3.7.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0