Warning: Permanently added '44.223.47.230' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8119374-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.0
PID: 28928
Logging PID: 28929
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 8119374,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '3cc4d878567d4d0bbb5308684cd3aa6293402018',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'python-pyhmmer',
 'package_version': '0.10.15-1',
 'project_dirname': 'PyPI',
 'project_name': 'PyPI',
 'project_owner': '@copr',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': '@copr/PyPI--ksurma',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': None,
 'submitter': 'ksurma',
 'tags': [],
 'task_id': '8119374-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer', '/var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer'...

Running: git checkout 3cc4d878567d4d0bbb5308684cd3aa6293402018 --

cmd: ['git', 'checkout', '3cc4d878567d4d0bbb5308684cd3aa6293402018', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer
rc: 0
stdout: 
stderr: Note: switching to '3cc4d878567d4d0bbb5308684cd3aa6293402018'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 3cc4d87 automatic import of python-pyhmmer

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pyhmmer-0.10.15.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o pyhmmer-0.10.15.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-pyhmmer/pyhmmer-0.10.15.tar.gz/md5/5774622a87c2e5d585be33fe5d604edb/pyhmmer-0.10.15.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 5004k  100 5004k    0     0   130M      0 --:--:-- --:--:-- --:--:--  132M
INFO: Reading stdout from command: md5sum pyhmmer-0.10.15.tar.gz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1728412338.439602 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1728412338.439602 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer/python-pyhmmer.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.9
INFO: Mock Version: 5.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1728412338.439602/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1728412338.439602/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/29320aea00754d1ab0bbc69f7d18b93f946d037226de42629e2e37282b4fffc1/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/29320aea00754d1ab0bbc69f7d18b93f946d037226de42629e2e37282b4fffc1/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1728412338.439602/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.94-1.fc42.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.6.2-1.fc42.x86_64
  dnf5-plugins-5.2.6.2-1.fc42.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  11.1 MiB/s |  21.9 MiB |  00m02s
 Copr repository                        100% | 240.3 MiB/s |  43.3 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:
 bash                              x86_64 5.2.32-2.fc42              fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              fedora      95.7 KiB
 coreutils                         x86_64 9.5-10.fc42                fedora       5.7 MiB
 cpio                              x86_64 2.15-2.fc41                fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 42-0.3                     fedora      19.4 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40.9000-1.fc42           fedora       0.0   B
 grep                              x86_64 3.11-9.fc41                fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                fedora     389.0 KiB
 info                              x86_64 7.1.1-1.fc42               fedora     361.9 KiB
 patch                             x86_64 2.7.6-25.fc41              fedora     266.7 KiB
 redhat-rpm-config                 noarch 296-1.fc42                 fedora     186.6 KiB
 rpm-build                         x86_64 4.19.94-1.fc42             fedora     194.3 KiB
 sed                               x86_64 4.9-3.fc41                 fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.16.0-4.fc42            fedora       4.1 MiB
 tar                               x86_64 2:1.35-4.fc41              fedora       2.9 MiB
 unzip                             x86_64 6.0-64.fc41                fedora     386.8 KiB
 util-linux                        x86_64 2.40.2-8.fc42              fedora       3.7 MiB
 which                             x86_64 2.21-42.fc41               fedora      80.2 KiB
 xz                                x86_64 1:5.6.3-1.fc42             fedora       1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.3.6-1.fc41               fedora       2.2 MiB
 alternatives                      x86_64 1.30-1.fc41                fedora      66.3 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        x86_64 4.0.2-1.fc41               fedora     331.3 KiB
 authselect                        x86_64 1.5.0-7.fc41               fedora     153.5 KiB
 authselect-libs                   x86_64 1.5.0-7.fc41               fedora     818.3 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          x86_64 2.43.1-1.fc42              fedora      27.5 MiB
 build-reproducibility-srpm-macros noarch 0.3.6-1.fc41               fedora     735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-2.fc42  fedora       2.6 MiB
 coreutils-common                  x86_64 9.5-10.fc42                fedora      11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              fedora     238.9 KiB
 crypto-policies                   noarch 20240927-1.git93b7251.fc42 fedora     136.8 KiB
 curl                              x86_64 8.10.1-2.fc42              fedora     453.3 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             fedora       2.3 MiB
 debugedit                         x86_64 5.0-17.fc41                fedora     199.3 KiB
 dwz                               x86_64 0.15-7.fc41                fedora     290.9 KiB
 ed                                x86_64 1.20.2-2.fc41              fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  fedora      40.1 KiB
 elfutils                          x86_64 0.191-8.fc41               fedora       2.6 MiB
 elfutils-debuginfod-client        x86_64 0.191-8.fc41               fedora      64.9 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0.191-8.fc41               fedora       1.2 MiB
 elfutils-libs                     x86_64 0.191-8.fc41               fedora     646.2 KiB
 fedora-gpg-keys                   noarch 42-0.2                     fedora     126.4 KiB
 fedora-release                    noarch 42-0.3                     fedora       0.0   B
 fedora-release-identity-basic     noarch 42-0.3                     fedora     694.0   B
 fedora-repos                      noarch 42-0.2                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 42-0.2                     fedora       2.2 KiB
 file                              x86_64 5.45-7.fc41                fedora     103.5 KiB
 file-libs                         x86_64 5.45-7.fc41                fedora       9.9 MiB
 filesystem                        x86_64 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       x86_64 15.1-2.fc42                fedora      13.0 MiB
 gdbm                              x86_64 1:1.23-7.fc41              fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               fedora     779.0   B
 glibc                             x86_64 2.40.9000-1.fc42           fedora       6.7 MiB
 glibc-common                      x86_64 2.40.9000-1.fc42           fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 2.40.9000-1.fc42           fedora       8.1 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               fedora      60.8 KiB
 jansson                           x86_64 2.13.1-10.fc41             fedora      88.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-2.fc41              fedora       2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               fedora      40.0 KiB
 libarchive                        x86_64 3.7.6-1.fc42               fedora     934.8 KiB
 libattr                           x86_64 2.5.2-4.fc41               fedora      28.5 KiB
 libblkid                          x86_64 2.40.2-8.fc42              fedora     262.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               fedora     837.6 KiB
 libcap                            x86_64 2.70-4.fc41                fedora     220.2 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-3.fc41              fedora      67.2 KiB
 libcurl                           x86_64 8.10.1-2.fc42              fedora     838.4 KiB
 libeconf                          x86_64 0.6.2-3.fc41               fedora      58.0 KiB
 libevent                          x86_64 2.1.12-14.fc41             fedora     895.7 KiB
 libfdisk                          x86_64 2.40.2-8.fc42              fedora     362.9 KiB
 libffi                            x86_64 3.4.6-3.fc42               fedora      86.4 KiB
 libgcc                            x86_64 14.2.1-4.fc42              fedora     274.6 KiB
 libgomp                           x86_64 14.2.1-4.fc42              fedora     523.8 KiB
 libidn2                           x86_64 2.3.7-2.fc41               fedora     329.1 KiB
 libmount                          x86_64 2.40.2-8.fc42              fedora     355.8 KiB
 libnghttp2                        x86_64 1.63.0-1.fc42              fedora     170.1 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc42               fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              fedora     417.8 KiB
 libselinux                        x86_64 3.7-6.fc42                 fedora     181.1 KiB
 libsemanage                       x86_64 3.7-3.fc42                 fedora     298.0 KiB
 libsepol                          x86_64 3.7-3.fc42                 fedora     818.0 KiB
 libsmartcols                      x86_64 2.40.2-8.fc42              fedora     180.4 KiB
 libssh                            x86_64 0.11.1-1.fc42              fedora     569.6 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         x86_64 14.2.1-4.fc42              fedora       2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              fedora     175.7 KiB
 libtirpc                          x86_64 1.3.5-0.fc41               fedora     202.7 KiB
 libtool-ltdl                      x86_64 2.4.7-12.fc41              fedora      66.2 KiB
 libunistring                      x86_64 1.1-8.fc41                 fedora       1.7 MiB
 libuuid                           x86_64 2.40.2-8.fc42              fedora      41.4 KiB
 libverto                          x86_64 0.3.2-9.fc41               fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.36-7.fc41              fedora     266.8 KiB
 libxml2                           x86_64 2.12.8-2.fc41              fedora       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               fedora     795.9 KiB
 lua-libs                          x86_64 5.4.6-6.fc41               fedora     285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          x86_64 2.6.8-5.fc41               fedora     644.2 KiB
 openssl-libs                      x86_64 1:3.2.2-8.fc42             fedora       7.8 MiB
 p11-kit                           x86_64 0.25.5-3.fc41              fedora       2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-3.fc41              fedora     391.4 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               x86_64 1.6.1-6.fc42               fedora       1.8 MiB
 pam-libs                          x86_64 1.6.1-6.fc42               fedora     139.0 KiB
 pcre2                             x86_64 10.44-1.fc41.1             fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc42               fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc42               fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.15.1-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               fedora     456.0   B
 readline                          x86_64 8.2-11.fc42                fedora     493.1 KiB
 rpm                               x86_64 4.19.94-1.fc42             fedora       3.1 MiB
 rpm-build-libs                    x86_64 4.19.94-1.fc42             fedora     206.7 KiB
 rpm-libs                          x86_64 4.19.94-1.fc42             fedora     722.1 KiB
 rpm-sequoia                       x86_64 1.7.0-2.fc41               fedora       2.4 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       x86_64 3.46.0-4.fc41              fedora       1.4 MiB
 systemd-libs                      x86_64 256.5-1.fc42               fedora       2.0 MiB
 util-linux-core                   x86_64 2.40.2-8.fc42              fedora       1.5 MiB
 xxhash-libs                       x86_64 0.8.2-4.fc42               fedora      88.4 KiB
 xz-libs                           x86_64 1:5.6.3-1.fc42             fedora     218.3 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               x86_64 3.0-41.fc41                fedora     703.2 KiB
 zlib-ng-compat                    x86_64 2.1.7-3.fc42               fedora     138.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:
 Buildsystem building group                                                              

Transaction Summary:
 Installing:       153 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B).
[  1/153] bzip2-0:1.0.8-19.fc41.x86_64  100% | 194.5 KiB/s |  52.5 KiB |  00m00s
[  2/153] cpio-0:2.15-2.fc41.x86_64     100% | 865.8 KiB/s | 291.8 KiB |  00m00s
[  3/153] diffutils-0:3.10-8.fc41.x86_6 100% |   2.9 MiB/s | 405.4 KiB |  00m00s
[  4/153] bash-0:5.2.32-2.fc42.x86_64   100% |   2.3 MiB/s |   1.8 MiB |  00m01s
[  5/153] fedora-release-common-0:42-0. 100% | 343.4 KiB/s |  23.0 KiB |  00m00s
[  6/153] findutils-1:4.10.0-4.fc41.x86 100% |   7.5 MiB/s | 548.6 KiB |  00m00s
[  7/153] glibc-minimal-langpack-0:2.40 100% |   1.8 MiB/s | 120.9 KiB |  00m00s
[  8/153] grep-0:3.11-9.fc41.x86_64     100% |   4.1 MiB/s | 299.8 KiB |  00m00s
[  9/153] gzip-0:1.13-2.fc41.x86_64     100% |   2.4 MiB/s | 170.2 KiB |  00m00s
[ 10/153] info-0:7.1.1-1.fc42.x86_64    100% |   2.6 MiB/s | 182.8 KiB |  00m00s
[ 11/153] patch-0:2.7.6-25.fc41.x86_64  100% |   1.9 MiB/s | 131.0 KiB |  00m00s
[ 12/153] redhat-rpm-config-0:296-1.fc4 100% |   1.2 MiB/s |  82.4 KiB |  00m00s
[ 13/153] rpm-build-0:4.19.94-1.fc42.x8 100% |   1.2 MiB/s |  83.1 KiB |  00m00s
[ 14/153] sed-0:4.9-3.fc41.x86_64       100% |   4.4 MiB/s | 317.7 KiB |  00m00s
[ 15/153] tar-2:1.35-4.fc41.x86_64      100% |  11.7 MiB/s | 860.7 KiB |  00m00s
[ 16/153] shadow-utils-2:4.16.0-4.fc42. 100% |   9.6 MiB/s |   1.3 MiB |  00m00s
[ 17/153] unzip-0:6.0-64.fc41.x86_64    100% |   2.5 MiB/s | 184.9 KiB |  00m00s
[ 18/153] which-0:2.21-42.fc41.x86_64   100% | 620.3 KiB/s |  41.6 KiB |  00m00s
[ 19/153] xz-1:5.6.3-1.fc42.x86_64      100% |   6.5 MiB/s | 475.1 KiB |  00m00s
[ 20/153] gawk-0:5.3.0-4.fc41.x86_64    100% |  15.5 MiB/s |   1.1 MiB |  00m00s
[ 21/153] coreutils-0:9.5-10.fc42.x86_6 100% | 800.1 KiB/s |   1.1 MiB |  00m01s
[ 22/153] util-linux-0:2.40.2-8.fc42.x8 100% |  16.1 MiB/s |   1.2 MiB |  00m00s
[ 23/153] filesystem-0:3.18-29.fc42.x86 100% |  15.5 MiB/s |   1.1 MiB |  00m00s
[ 24/153] ncurses-libs-0:6.5-2.20240629 100% |   4.6 MiB/s | 334.0 KiB |  00m00s
[ 25/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 613.6 KiB/s |  41.1 KiB |  00m00s
[ 26/153] coreutils-common-0:9.5-10.fc4 100% |  28.3 MiB/s |   2.1 MiB |  00m00s
[ 27/153] gmp-1:6.3.0-2.fc41.x86_64     100% |   4.6 MiB/s | 318.0 KiB |  00m00s
[ 28/153] glibc-0:2.40.9000-1.fc42.x86_ 100% |  10.9 MiB/s |   2.2 MiB |  00m00s
[ 29/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 271.2 KiB/s |  18.2 KiB |  00m00s
[ 30/153] libacl-0:2.3.2-2.fc41.x86_64  100% | 350.0 KiB/s |  24.5 KiB |  00m00s
[ 31/153] libcap-0:2.70-4.fc41.x86_64   100% |   1.2 MiB/s |  86.7 KiB |  00m00s
[ 32/153] libselinux-0:3.7-6.fc42.x86_6 100% |   1.3 MiB/s |  88.6 KiB |  00m00s
[ 33/153] openssl-libs-1:3.2.2-8.fc42.x 100% |  30.8 MiB/s |   2.3 MiB |  00m00s
[ 34/153] systemd-libs-0:256.5-1.fc42.x 100% |  10.3 MiB/s | 730.4 KiB |  00m00s
[ 35/153] fedora-repos-0:42-0.2.noarch  100% | 136.8 KiB/s |   9.2 KiB |  00m00s
[ 36/153] glibc-common-0:2.40.9000-1.fc 100% |   5.6 MiB/s | 409.4 KiB |  00m00s
[ 37/153] pcre2-0:10.44-1.fc41.1.x86_64 100% |   3.5 MiB/s | 243.1 KiB |  00m00s
[ 38/153] ed-0:1.20.2-2.fc41.x86_64     100% |   1.2 MiB/s |  81.8 KiB |  00m00s
[ 39/153] ansible-srpm-macros-0:1-16.fc 100% | 292.6 KiB/s |  20.8 KiB |  00m00s
[ 40/153] build-reproducibility-srpm-ma 100% | 155.9 KiB/s |  10.6 KiB |  00m00s
[ 41/153] dwz-0:0.15-7.fc41.x86_64      100% |   2.0 MiB/s | 138.0 KiB |  00m00s
[ 42/153] efi-srpm-macros-0:5-12.fc41.n 100% | 319.7 KiB/s |  22.4 KiB |  00m00s
[ 43/153] file-0:5.45-7.fc41.x86_64     100% | 722.5 KiB/s |  49.1 KiB |  00m00s
[ 44/153] fonts-srpm-macros-1:2.0.5-17. 100% | 402.5 KiB/s |  27.0 KiB |  00m00s
[ 45/153] forge-srpm-macros-0:0.4.0-1.f 100% | 282.3 KiB/s |  19.8 KiB |  00m00s
[ 46/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 118.8 KiB/s |   8.0 KiB |  00m00s
[ 47/153] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 136.1 KiB/s |   9.1 KiB |  00m00s
[ 48/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 127.9 KiB/s |   9.0 KiB |  00m00s
[ 49/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 411.0 KiB/s |  28.0 KiB |  00m00s
[ 50/153] kernel-srpm-macros-0:1.0-24.f 100% | 147.3 KiB/s |   9.9 KiB |  00m00s
[ 51/153] lua-srpm-macros-0:1-14.fc41.n 100% | 126.8 KiB/s |   8.9 KiB |  00m00s
[ 52/153] ocaml-srpm-macros-0:10-3.fc41 100% | 137.3 KiB/s |   9.2 KiB |  00m00s
[ 53/153] openblas-srpm-macros-0:2-18.f 100% | 115.1 KiB/s |   7.7 KiB |  00m00s
[ 54/153] package-notes-srpm-macros-0:0 100% | 140.4 KiB/s |   9.8 KiB |  00m00s
[ 55/153] perl-srpm-macros-0:1-56.fc41. 100% | 127.1 KiB/s |   8.5 KiB |  00m00s
[ 56/153] pyproject-srpm-macros-0:1.15. 100% | 199.1 KiB/s |  13.3 KiB |  00m00s
[ 57/153] python-srpm-macros-0:3.13-3.f 100% | 338.9 KiB/s |  23.7 KiB |  00m00s
[ 58/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 130.9 KiB/s |   8.9 KiB |  00m00s
[ 59/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 136.2 KiB/s |   9.1 KiB |  00m00s
[ 60/153] rpm-0:4.19.94-1.fc42.x86_64   100% |   7.5 MiB/s | 547.8 KiB |  00m00s
[ 61/153] rust-srpm-macros-0:26.3-3.fc4 100% | 180.6 KiB/s |  12.1 KiB |  00m00s
[ 62/153] zig-srpm-macros-0:1-3.fc41.no 100% | 121.2 KiB/s |   8.1 KiB |  00m00s
[ 63/153] zip-0:3.0-41.fc41.x86_64      100% |   3.7 MiB/s | 264.8 KiB |  00m00s
[ 64/153] debugedit-0:5.0-17.fc41.x86_6 100% |   1.2 MiB/s |  80.1 KiB |  00m00s
[ 65/153] elfutils-0:0.191-8.fc41.x86_6 100% |   7.6 MiB/s | 529.4 KiB |  00m00s
[ 66/153] elfutils-libelf-0:0.191-8.fc4 100% |   2.9 MiB/s | 207.6 KiB |  00m00s
[ 67/153] libarchive-0:3.7.6-1.fc42.x86 100% |   5.9 MiB/s | 413.7 KiB |  00m00s
[ 68/153] popt-0:1.19-7.fc41.x86_64     100% | 969.7 KiB/s |  65.9 KiB |  00m00s
[ 69/153] readline-0:8.2-11.fc42.x86_64 100% |   2.9 MiB/s | 213.4 KiB |  00m00s
[ 70/153] rpm-build-libs-0:4.19.94-1.fc 100% |   1.4 MiB/s |  99.1 KiB |  00m00s
[ 71/153] rpm-libs-0:4.19.94-1.fc42.x86 100% |   4.4 MiB/s | 309.6 KiB |  00m00s
[ 72/153] zstd-0:1.5.6-2.fc41.x86_64    100% |   6.6 MiB/s | 481.5 KiB |  00m00s
[ 73/153] audit-libs-0:4.0.2-1.fc41.x86 100% |   1.8 MiB/s | 126.2 KiB |  00m00s
[ 74/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 480.2 KiB/s |  32.2 KiB |  00m00s
[ 75/153] libsemanage-0:3.7-3.fc42.x86_ 100% |   1.6 MiB/s | 117.2 KiB |  00m00s
[ 76/153] libxcrypt-0:4.4.36-7.fc41.x86 100% |   1.7 MiB/s | 118.5 KiB |  00m00s
[ 77/153] pam-libs-0:1.6.1-6.fc42.x86_6 100% | 854.2 KiB/s |  57.2 KiB |  00m00s
[ 78/153] setup-0:2.15.0-5.fc41.noarch  100% |   2.2 MiB/s | 154.4 KiB |  00m00s
[ 79/153] xz-libs-1:5.6.3-1.fc42.x86_64 100% |   1.6 MiB/s | 111.7 KiB |  00m00s
[ 80/153] mpfr-0:4.2.1-5.fc41.x86_64    100% |   5.0 MiB/s | 346.3 KiB |  00m00s
[ 81/153] libblkid-0:2.40.2-8.fc42.x86_ 100% |   1.7 MiB/s | 125.0 KiB |  00m00s
[ 82/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 486.0 KiB/s |  32.6 KiB |  00m00s
[ 83/153] libfdisk-0:2.40.2-8.fc42.x86_ 100% |   2.3 MiB/s | 159.6 KiB |  00m00s
[ 84/153] libsmartcols-0:2.40.2-8.fc42. 100% |   1.2 MiB/s |  83.9 KiB |  00m00s
[ 85/153] libmount-0:2.40.2-8.fc42.x86_ 100% |   2.2 MiB/s | 156.1 KiB |  00m00s
[ 86/153] libuuid-0:2.40.2-8.fc42.x86_6 100% | 432.5 KiB/s |  29.0 KiB |  00m00s
[ 87/153] util-linux-core-0:2.40.2-8.fc 100% |   7.7 MiB/s | 537.3 KiB |  00m00s
[ 88/153] zlib-ng-compat-0:2.1.7-3.fc42 100% |   1.1 MiB/s |  77.9 KiB |  00m00s
[ 89/153] glibc-gconv-extra-0:2.40.9000 100% |  23.9 MiB/s |   1.7 MiB |  00m00s
[ 90/153] basesystem-0:11-21.fc41.noarc 100% | 110.0 KiB/s |   7.4 KiB |  00m00s
[ 91/153] libgcc-0:14.2.1-4.fc42.x86_64 100% |   1.9 MiB/s | 133.3 KiB |  00m00s
[ 92/153] ncurses-base-0:6.5-2.20240629 100% |   1.3 MiB/s |  88.4 KiB |  00m00s
[ 93/153] libsepol-0:3.7-3.fc42.x86_64  100% |   4.9 MiB/s | 342.2 KiB |  00m00s
[ 94/153] ca-certificates-0:2024.2.69_v 100% |  12.8 MiB/s | 944.5 KiB |  00m00s
[ 95/153] crypto-policies-0:20240927-1. 100% |   1.4 MiB/s |  97.2 KiB |  00m00s
[ 96/153] fedora-gpg-keys-0:42-0.2.noar 100% |   1.9 MiB/s | 133.6 KiB |  00m00s
[ 97/153] pcre2-syntax-0:10.44-1.fc41.1 100% |   2.2 MiB/s | 149.9 KiB |  00m00s
[ 98/153] fedora-repos-rawhide-0:42-0.2 100% | 124.9 KiB/s |   8.7 KiB |  00m00s
[ 99/153] add-determinism-0:0.3.6-1.fc4 100% |  12.1 MiB/s | 851.8 KiB |  00m00s
[100/153] file-libs-0:5.45-7.fc41.x86_6 100% |  10.8 MiB/s | 762.0 KiB |  00m00s
[101/153] curl-0:8.10.1-2.fc42.x86_64   100% |   3.1 MiB/s | 221.3 KiB |  00m00s
[102/153] elfutils-libs-0:0.191-8.fc41. 100% |   3.7 MiB/s | 257.5 KiB |  00m00s
[103/153] elfutils-debuginfod-client-0: 100% | 555.8 KiB/s |  37.2 KiB |  00m00s
[104/153] libstdc++-0:14.2.1-4.fc42.x86 100% |  12.2 MiB/s | 888.0 KiB |  00m00s
[105/153] libzstd-0:1.5.6-2.fc41.x86_64 100% |   4.5 MiB/s | 310.3 KiB |  00m00s
[106/153] libxml2-0:2.12.8-2.fc41.x86_6 100% |   9.9 MiB/s | 687.3 KiB |  00m00s
[107/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |   1.0 MiB/s |  70.7 KiB |  00m00s
[108/153] libgomp-0:14.2.1-4.fc42.x86_6 100% |   5.1 MiB/s | 355.3 KiB |  00m00s
[109/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% |   1.9 MiB/s | 132.0 KiB |  00m00s
[110/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% |  12.3 MiB/s | 892.5 KiB |  00m00s
[111/153] sqlite-libs-0:3.46.0-4.fc41.x 100% |  10.2 MiB/s | 712.4 KiB |  00m00s
[112/153] elfutils-default-yama-scope-0 100% | 183.7 KiB/s |  12.3 KiB |  00m00s
[113/153] authselect-libs-0:1.5.0-7.fc4 100% |   3.0 MiB/s | 218.1 KiB |  00m00s
[114/153] pam-0:1.6.1-6.fc42.x86_64     100% |   8.0 MiB/s | 554.2 KiB |  00m00s
[115/153] authselect-0:1.5.0-7.fc41.x86 100% |   2.1 MiB/s | 145.7 KiB |  00m00s
[116/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 804.2 KiB/s |  56.3 KiB |  00m00s
[117/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 441.9 KiB/s |  29.6 KiB |  00m00s
[118/153] libpwquality-0:1.4.5-11.fc41. 100% |   1.7 MiB/s | 119.1 KiB |  00m00s
[119/153] libtirpc-0:1.3.5-0.fc41.x86_6 100% |   1.3 MiB/s |  94.2 KiB |  00m00s
[120/153] cracklib-0:2.9.11-6.fc41.x86_ 100% |   1.3 MiB/s |  92.0 KiB |  00m00s
[121/153] krb5-libs-0:1.21.3-2.fc41.x86 100% |  10.7 MiB/s | 757.4 KiB |  00m00s
[122/153] libcom_err-0:1.47.1-3.fc41.x8 100% | 377.3 KiB/s |  26.4 KiB |  00m00s
[123/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 472.4 KiB/s |  31.6 KiB |  00m00s
[124/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 308.8 KiB/s |  20.7 KiB |  00m00s
[125/153] alternatives-0:1.30-1.fc41.x8 100% | 633.8 KiB/s |  42.5 KiB |  00m00s
[126/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 663.1 KiB/s |  44.4 KiB |  00m00s
[127/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 149.4 KiB/s |  10.0 KiB |  00m00s
[128/153] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 674.3 KiB/s |  45.2 KiB |  00m00s
[129/153] binutils-0:2.43.1-1.fc42.x86_ 100% |  29.7 MiB/s |   6.5 MiB |  00m00s
[130/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 213.8 KiB/s |  14.3 KiB |  00m00s
[131/153] libpkgconf-0:2.3.0-1.fc42.x86 100% | 574.5 KiB/s |  38.5 KiB |  00m00s
[132/153] gdbm-1:1.23-7.fc41.x86_64     100% |   2.1 MiB/s | 151.8 KiB |  00m00s
[133/153] libffi-0:3.4.6-3.fc42.x86_64  100% | 596.9 KiB/s |  40.0 KiB |  00m00s
[134/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% |   7.1 MiB/s | 490.9 KiB |  00m00s
[135/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% |   1.0 MiB/s |  74.2 KiB |  00m00s
[136/153] p11-kit-trust-0:0.25.5-3.fc41 100% |   1.9 MiB/s | 132.1 KiB |  00m00s
[137/153] fedora-release-0:42-0.3.noarc 100% | 182.5 KiB/s |  12.2 KiB |  00m00s
[138/153] xxhash-libs-0:0.8.2-4.fc42.x8 100% | 548.9 KiB/s |  36.8 KiB |  00m00s
[139/153] fedora-release-identity-basic 100% | 191.4 KiB/s |  13.0 KiB |  00m00s
[140/153] gdb-minimal-0:15.1-2.fc42.x86 100% |  29.5 MiB/s |   4.3 MiB |  00m00s
[141/153] libcurl-0:8.10.1-2.fc42.x86_6 100% |   5.3 MiB/s | 371.3 KiB |  00m00s
[142/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% |   4.9 MiB/s | 340.5 KiB |  00m00s
[143/153] libidn2-0:2.3.7-2.fc41.x86_64 100% |   1.7 MiB/s | 118.4 KiB |  00m00s
[144/153] libnghttp2-0:1.63.0-1.fc42.x8 100% |   1.1 MiB/s |  76.7 KiB |  00m00s
[145/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 956.4 KiB/s |  64.1 KiB |  00m00s
[146/153] openldap-0:2.6.8-5.fc41.x86_6 100% |   3.7 MiB/s | 255.6 KiB |  00m00s
[147/153] libssh-0:0.11.1-1.fc42.x86_64 100% |   3.2 MiB/s | 231.9 KiB |  00m00s
[148/153] libunistring-0:1.1-8.fc41.x86 100% |   7.7 MiB/s | 544.8 KiB |  00m00s
[149/153] publicsuffix-list-dafsa-0:202 100% | 869.8 KiB/s |  58.3 KiB |  00m00s
[150/153] libssh-config-0:0.11.1-1.fc42 100% | 134.1 KiB/s |   9.4 KiB |  00m00s
[151/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  11.4 MiB/s | 794.9 KiB |  00m00s
[152/153] libevent-0:2.1.12-14.fc41.x86 100% |   3.7 MiB/s | 257.5 KiB |  00m00s
[153/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 508.4 KiB/s |  35.6 KiB |  00m00s
--------------------------------------------------------------------------------
[153/153] Total                         100% |  11.6 MiB/s |  53.2 MiB |  00m05s
Running transaction
Importing PGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/155] Verify package files          100% | 869.0   B/s | 153.0   B |  00m00s
[  2/155] Prepare transaction           100% |   4.0 KiB/s | 153.0   B |  00m00s
[  3/155] Installing libgcc-0:14.2.1-4. 100% | 269.8 MiB/s | 276.3 KiB |  00m00s
[  4/155] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/155] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  6/155] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  7/155] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/155] Installing fedora-gpg-keys-0: 100% |  56.1 MiB/s | 172.2 KiB |  00m00s
[  9/155] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/155] Installing fedora-release-com 100% |  23.1 MiB/s |  23.7 KiB |  00m00s
[ 11/155] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/155] Installing setup-0:2.15.0-5.f 100% |  59.1 MiB/s | 726.1 KiB |  00m00s
[ 13/155] Installing filesystem-0:3.18- 100% |   3.5 MiB/s | 212.6 KiB |  00m00s
[ 14/155] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/155] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 17/155] Installing ncurses-base-0:6.5 100% |  85.9 MiB/s | 351.7 KiB |  00m00s
[ 18/155] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/155] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 20/155] Installing glibc-0:2.40.9000- 100% | 203.2 MiB/s |   6.7 MiB |  00m00s
[ 21/155] Installing bash-0:5.2.32-2.fc 100% | 408.5 MiB/s |   8.2 MiB |  00m00s
[ 22/155] Installing glibc-common-0:2.4 100% | 209.5 MiB/s |   1.0 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 23/155] Installing glibc-gconv-extra- 100% | 241.6 MiB/s |   8.2 MiB |  00m00s
[ 24/155] Installing zlib-ng-compat-0:2 100% | 135.5 MiB/s | 138.8 KiB |  00m00s
[ 25/155] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.8 KiB |  00m00s
[ 26/155] Installing xz-libs-1:5.6.3-1. 100% | 214.3 MiB/s | 219.5 KiB |  00m00s
[ 27/155] Installing popt-0:1.19-7.fc41 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[ 28/155] Installing readline-0:8.2-11. 100% | 241.8 MiB/s | 495.3 KiB |  00m00s
[ 29/155] Installing libuuid-0:2.40.2-8 100% |   0.0   B/s |  42.5 KiB |  00m00s
[ 30/155] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB |  00m00s
[ 31/155] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB |  00m00s
[ 32/155] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 33/155] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  40.7 KiB |  00m00s
[ 34/155] Installing libxcrypt-0:4.4.36 100% | 263.2 MiB/s | 269.5 KiB |  00m00s
[ 35/155] Installing libstdc++-0:14.2.1 100% | 396.4 MiB/s |   2.8 MiB |  00m00s
[ 36/155] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB |  00m00s
[ 37/155] Installing elfutils-libelf-0: 100% | 389.7 MiB/s |   1.2 MiB |  00m00s
[ 38/155] Installing libeconf-0:0.6.2-3 100% |   0.0   B/s |  59.7 KiB |  00m00s
[ 39/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 40/155] Installing dwz-0:0.15-7.fc41. 100% | 285.5 MiB/s | 292.3 KiB |  00m00s
[ 41/155] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB |  00m00s
[ 42/155] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s |   1.7 MiB |  00m00s
[ 43/155] Installing unzip-0:6.0-64.fc4 100% | 381.1 MiB/s | 390.3 KiB |  00m00s
[ 44/155] Installing file-libs-0:5.45-7 100% | 662.3 MiB/s |   9.9 MiB |  00m00s
[ 45/155] Installing file-0:5.45-7.fc41 100% |  12.8 MiB/s | 105.0 KiB |  00m00s
[ 46/155] Installing crypto-policies-0: 100% |  39.8 MiB/s | 163.2 KiB |  00m00s
[ 47/155] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB |  00m00s
[ 48/155] Installing grep-0:3.11-9.fc41 100% | 200.7 MiB/s |   1.0 MiB |  00m00s
[ 49/155] Installing xz-1:5.6.3-1.fc42. 100% | 247.4 MiB/s |   1.2 MiB |  00m00s
[ 50/155] Installing libcap-ng-0:0.8.5- 100% |  69.4 MiB/s |  71.0 KiB |  00m00s
[ 51/155] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB |  00m00s
[ 52/155] Installing pam-libs-0:1.6.1-6 100% | 138.0 MiB/s | 141.3 KiB |  00m00s
[ 53/155] Installing libcap-0:2.70-4.fc 100% | 110.0 MiB/s | 225.2 KiB |  00m00s
[ 54/155] Installing systemd-libs-0:256 100% | 338.9 MiB/s |   2.0 MiB |  00m00s
[ 55/155] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 56/155] Installing libsepol-0:3.7-3.f 100% | 266.6 MiB/s | 819.0 KiB |  00m00s
[ 57/155] Installing libselinux-0:3.7-6 100% | 178.0 MiB/s | 182.3 KiB |  00m00s
[ 58/155] Installing sed-0:4.9-3.fc41.x 100% | 212.3 MiB/s | 869.7 KiB |  00m00s
[ 59/155] Installing findutils-1:4.10.0 100% | 309.7 MiB/s |   1.9 MiB |  00m00s
[ 60/155] Installing libmount-0:2.40.2- 100% | 348.6 MiB/s | 356.9 KiB |  00m00s
[ 61/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 62/155] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB |  00m00s
[ 63/155] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 64/155] Installing alternatives-0:1.3 100% |  66.3 MiB/s |  67.9 KiB |  00m00s
[ 65/155] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 66/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 67/155] Installing p11-kit-0:0.25.5-3 100% | 275.9 MiB/s |   2.2 MiB |  00m00s
[ 68/155] Installing libunistring-0:1.1 100% | 346.1 MiB/s |   1.7 MiB |  00m00s
[ 69/155] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB |  00m00s
[ 70/155] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 71/155] Installing p11-kit-trust-0:0. 100% |  42.7 MiB/s | 393.1 KiB |  00m00s
[ 72/155] Installing zstd-0:1.5.6-2.fc4 100% | 338.3 MiB/s |   1.7 MiB |  00m00s
[ 73/155] Installing util-linux-core-0: 100% | 254.6 MiB/s |   1.5 MiB |  00m00s
[ 74/155] Installing tar-2:1.35-4.fc41. 100% | 369.8 MiB/s |   3.0 MiB |  00m00s
[ 75/155] Installing libsemanage-0:3.7- 100% | 146.4 MiB/s | 299.8 KiB |  00m00s
[ 76/155] Installing shadow-utils-2:4.1 100% | 259.1 MiB/s |   4.1 MiB |  00m00s
[ 77/155] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB |  00m00s
[ 78/155] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB |  00m00s
[ 79/155] Installing cyrus-sasl-lib-0:2 100% | 384.3 MiB/s |   2.3 MiB |  00m00s
[ 80/155] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB |  00m00s
[ 81/155] Installing libxml2-0:2.12.8-2 100% | 342.4 MiB/s |   1.7 MiB |  00m00s
[ 82/155] Installing bzip2-0:1.0.8-19.f 100% |  97.8 MiB/s | 100.2 KiB |  00m00s
[ 83/155] Installing add-determinism-0: 100% | 374.3 MiB/s |   2.2 MiB |  00m00s
[ 84/155] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 85/155] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s |   1.4 MiB |  00m00s
[ 86/155] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB |  00m00s
[ 87/155] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB |  00m00s
[ 88/155] Installing elfutils-default-y 100% | 291.9 KiB/s |   2.0 KiB |  00m00s
[ 89/155] Installing elfutils-libs-0:0. 100% | 316.4 MiB/s | 648.0 KiB |  00m00s
[ 90/155] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 91/155] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s |   1.6 MiB |  00m00s
[ 92/155] Installing libgomp-0:14.2.1-4 100% | 256.4 MiB/s | 525.2 KiB |  00m00s
[ 93/155] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[ 94/155] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.3 KiB |  00m00s
[ 95/155] Installing jansson-0:2.13.1-1 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 96/155] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  79.3 KiB |  00m00s
[ 97/155] Installing pkgconf-0:2.3.0-1. 100% |  89.0 MiB/s |  91.1 KiB |  00m00s
[ 98/155] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[ 99/155] Installing xxhash-libs-0:0.8. 100% |  87.7 MiB/s |  89.8 KiB |  00m00s
[100/155] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB |  00m00s
[101/155] Installing libnghttp2-0:1.63. 100% | 167.2 MiB/s | 171.2 KiB |  00m00s
[102/155] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[103/155] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[104/155] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[105/155] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[106/155] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[107/155] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[108/155] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[109/155] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[110/155] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[111/155] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[112/155] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[113/155] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[114/155] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[115/155] Installing coreutils-common-0 100% | 414.5 MiB/s |  11.2 MiB |  00m00s
[116/155] Installing openssl-libs-1:3.2 100% | 434.9 MiB/s |   7.8 MiB |  00m00s
[117/155] Installing coreutils-0:9.5-10 100% | 272.7 MiB/s |   5.7 MiB |  00m00s
[118/155] Installing ca-certificates-0: 100% |   2.1 MiB/s |   2.4 MiB |  00m01s
[119/155] Installing krb5-libs-0:1.21.3 100% | 287.4 MiB/s |   2.3 MiB |  00m00s
[120/155] Installing libarchive-0:3.7.6 100% | 304.9 MiB/s | 936.7 KiB |  00m00s
[121/155] Installing libtirpc-0:1.3.5-0 100% | 199.7 MiB/s | 204.5 KiB |  00m00s
[122/155] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB |  00m00s
[123/155] Installing authselect-libs-0: 100% | 162.7 MiB/s | 833.2 KiB |  00m00s
[124/155] Installing cracklib-0:2.9.11- 100% |  81.5 MiB/s | 250.3 KiB |  00m00s
[125/155] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB |  00m00s
[126/155] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[127/155] Installing pam-0:1.6.1-6.fc42 100% | 170.7 MiB/s |   1.9 MiB |  00m00s
[128/155] Installing libssh-0:0.11.1-1. 100% | 279.2 MiB/s | 571.7 KiB |  00m00s
[129/155] Installing rpm-sequoia-0:1.7. 100% | 394.5 MiB/s |   2.4 MiB |  00m00s
[130/155] Installing rpm-libs-0:4.19.94 100% | 235.6 MiB/s | 723.6 KiB |  00m00s
[131/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB |  00m00s
[132/155] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB |  00m00s
[133/155] Installing openldap-0:2.6.8-5 100% | 210.9 MiB/s | 648.0 KiB |  00m00s
[134/155] Installing libcurl-0:8.10.1-2 100% | 273.3 MiB/s | 839.5 KiB |  00m00s
[135/155] Installing elfutils-debuginfo 100% |  65.3 MiB/s |  66.9 KiB |  00m00s
[136/155] Installing elfutils-0:0.191-8 100% | 365.7 MiB/s |   2.6 MiB |  00m00s
[137/155] Installing binutils-0:2.43.1- 100% | 382.4 MiB/s |  27.5 MiB |  00m00s
[138/155] Installing gdb-minimal-0:15.1 100% | 406.1 MiB/s |  13.0 MiB |  00m00s
[139/155] Installing debugedit-0:5.0-17 100% | 197.3 MiB/s | 202.0 KiB |  00m00s
[140/155] Installing curl-0:8.10.1-2.fc 100% |  40.5 MiB/s | 455.8 KiB |  00m00s
[141/155] Installing rpm-0:4.19.94-1.fc 100% | 192.8 MiB/s |   2.5 MiB |  00m00s
[142/155] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[143/155] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[144/155] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[145/155] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[146/155] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[147/155] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[148/155] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[149/155] Installing redhat-rpm-config- 100% |  94.4 MiB/s | 193.2 KiB |  00m00s
[150/155] Installing rpm-build-0:4.19.9 100% |  99.1 MiB/s | 202.9 KiB |  00m00s
[151/155] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[152/155] Installing util-linux-0:2.40. 100% | 168.9 MiB/s |   3.7 MiB |  00m00s
[153/155] Installing authselect-0:1.5.0 100% |  77.1 MiB/s | 157.9 KiB |  00m00s
[154/155] Installing which-0:2.21-42.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[155/155] Installing info-0:7.1.1-1.fc4 100% | 236.8 KiB/s | 362.3 KiB |  00m02s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-7.fc41.x86_64
authselect-libs-1.5.0-7.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-2.fc42.x86_64
binutils-2.43.1-1.fc42.x86_64
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch
coreutils-9.5-10.fc42.x86_64
coreutils-common-9.5-10.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20240927-1.git93b7251.fc42.noarch
curl-8.10.1-2.fc42.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.0-17.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-7.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.x86_64
elfutils-debuginfod-client-0.191-8.fc41.x86_64
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.x86_64
elfutils-libs-0.191-8.fc41.x86_64
fedora-gpg-keys-42-0.2.noarch
fedora-release-42-0.3.noarch
fedora-release-common-42-0.3.noarch
fedora-release-identity-basic-42-0.3.noarch
fedora-repos-42-0.2.noarch
fedora-repos-rawhide-42-0.2.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-29.fc42.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.1-2.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-1.fc42.x86_64
glibc-common-2.40.9000-1.fc42.x86_64
glibc-gconv-extra-2.40.9000-1.fc42.x86_64
glibc-minimal-langpack-2.40.9000-1.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1.1-1.fc42.x86_64
jansson-2.13.1-10.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-2.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.6-1.fc42.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc42.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-3.fc41.x86_64
libcurl-8.10.1-2.fc42.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-14.2.1-4.fc42.x86_64
libgomp-14.2.1-4.fc42.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc42.x86_64
libnghttp2-1.63.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-6.fc42.x86_64
libsemanage-3.7-3.fc42.x86_64
libsepol-3.7-3.fc42.x86_64
libsmartcols-2.40.2-8.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-4.fc42.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.5-0.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-7.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-8.fc42.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-6.fc42.x86_64
pam-libs-1.6.1-6.fc42.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.15.1-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-296-1.fc42.noarch
rpm-4.19.94-1.fc42.x86_64
rpm-build-4.19.94-1.fc42.x86_64
rpm-build-libs-4.19.94-1.fc42.x86_64
rpm-libs-4.19.94-1.fc42.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.16.0-4.fc42.x86_64
sqlite-libs-3.46.0-4.fc41.x86_64
systemd-libs-256.5-1.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc42.x86_64
util-linux-core-2.40.2-8.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc42.x86_64
xz-5.6.3-1.fc42.x86_64
xz-libs-5.6.3-1.fc42.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-3.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1728412338.439602/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-384r4vk1/python-pyhmmer/python-pyhmmer.spec) Config(child) 0 minutes 29 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.10.15-1.fc42.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1728412338.439602/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1728412338.439602/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1728412338.439602/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.94-1.fc42.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.6.2-1.fc42.x86_64
  dnf5-plugins-5.2.6.2-1.fc42.x86_64
Finish: chroot init
Start: build phase for python-pyhmmer-0.10.15-1.fc42.src.rpm
Start: build setup for python-pyhmmer-0.10.15-1.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% | 985.6 KiB/s |  26.6 KiB |  00m00s
 Copr repository                        100% |  96.3 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% | 155.1 MiB/s |  43.3 MiB |  00m00s
Repositories loaded.
Package                 Arch   Version           Repository      Size
Installing:
 gcc                    x86_64 14.2.1-4.fc42     fedora     104.4 MiB
 python3-devel          x86_64 3.13.0~rc3-1.fc42 fedora       1.8 MiB
Installing dependencies:
 annobin-docs           noarch 12.70-1.fc42      fedora      97.7 KiB
 annobin-plugin-gcc     x86_64 12.70-1.fc42      fedora     985.6 KiB
 cpp                    x86_64 14.2.1-4.fc42     fedora      35.0 MiB
 expat                  x86_64 2.6.3-1.fc42      fedora     291.5 KiB
 gcc-plugin-annobin     x86_64 14.2.1-4.fc42     fedora      61.1 KiB
 glibc-devel            x86_64 2.40.9000-1.fc42  fedora      37.8 KiB
 glibc-headers-x86      noarch 2.40.9000-1.fc42  fedora       2.2 MiB
 kernel-headers         x86_64 6.11.0-63.fc42    fedora       6.4 MiB
 libb2                  x86_64 0.98.1-12.fc41    fedora      42.2 KiB
 libmpc                 x86_64 1.3.1-6.fc41      fedora     164.7 KiB
 libxcrypt-devel        x86_64 4.4.36-7.fc41     fedora      30.3 KiB
 make                   x86_64 1:4.4.1-9.fc42    fedora       1.8 MiB
 mpdecimal              x86_64 2.5.1-16.fc41     fedora     204.9 KiB
 pyproject-rpm-macros   noarch 1.15.1-1.fc42     fedora     109.2 KiB
 python-pip-wheel       noarch 24.2-2.fc42       fedora       1.2 MiB
 python-rpm-macros      noarch 3.13-3.fc41       fedora      22.1 KiB
 python3                x86_64 3.13.0~rc3-1.fc42 fedora      31.8 KiB
 python3-libs           x86_64 3.13.0~rc3-1.fc42 fedora      40.4 MiB
 python3-packaging      noarch 24.1-2.fc41       fedora     422.3 KiB
 python3-rpm-generators noarch 14-11.fc41        fedora      81.7 KiB
 python3-rpm-macros     noarch 3.13-3.fc41       fedora       6.4 KiB
 tzdata                 noarch 2024a-9.fc41      fedora       1.7 MiB

Transaction Summary:
 Installing:        24 packages

Total size of inbound packages is 65 MiB. Need to download 65 MiB.
After this operation, 197 MiB extra will be used (install 197 MiB, remove 0 B).
[ 1/24] python3-devel-0:3.13.0~rc3-1.fc 100% |   2.8 MiB/s | 402.4 KiB |  00m00s
[ 2/24] libmpc-0:1.3.1-6.fc41.x86_64    100% |   3.2 MiB/s |  71.1 KiB |  00m00s
[ 3/24] make-1:4.4.1-9.fc42.x86_64      100% |  15.1 MiB/s | 586.3 KiB |  00m00s
[ 4/24] python3-libs-0:3.13.0~rc3-1.fc4 100% |  34.1 MiB/s |   9.1 MiB |  00m00s
[ 5/24] expat-0:2.6.3-1.fc42.x86_64     100% |   8.0 MiB/s | 114.1 KiB |  00m00s
[ 6/24] libb2-0:0.98.1-12.fc41.x86_64   100% |   2.1 MiB/s |  25.7 KiB |  00m00s
[ 7/24] cpp-0:14.2.1-4.fc42.x86_64      100% |  23.3 MiB/s |  11.9 MiB |  00m01s
[ 8/24] mpdecimal-0:2.5.1-16.fc41.x86_6 100% |   5.4 MiB/s |  89.0 KiB |  00m00s
[ 9/24] python-pip-wheel-0:24.2-2.fc42. 100% |  32.5 MiB/s |   1.2 MiB |  00m00s
[10/24] tzdata-0:2024a-9.fc41.noarch    100% |  17.9 MiB/s | 714.7 KiB |  00m00s
[11/24] python3-0:3.13.0~rc3-1.fc42.x86 100% |   2.7 MiB/s |  27.8 KiB |  00m00s
[12/24] glibc-devel-0:2.40.9000-1.fc42. 100% |  10.2 MiB/s | 135.6 KiB |  00m00s
[13/24] libxcrypt-devel-0:4.4.36-7.fc41 100% |   2.6 MiB/s |  28.9 KiB |  00m00s
[14/24] glibc-headers-x86-0:2.40.9000-1 100% |  32.3 MiB/s | 627.7 KiB |  00m00s
[15/24] annobin-plugin-gcc-0:12.70-1.fc 100% |  26.4 MiB/s | 971.7 KiB |  00m00s
[16/24] kernel-headers-0:6.11.0-63.fc42 100% |  33.9 MiB/s |   1.6 MiB |  00m00s
[17/24] gcc-plugin-annobin-0:14.2.1-4.f 100% |   5.4 MiB/s |  55.2 KiB |  00m00s
[18/24] annobin-docs-0:12.70-1.fc42.noa 100% |   9.0 MiB/s |  92.0 KiB |  00m00s
[19/24] pyproject-rpm-macros-0:1.15.1-1 100% |   4.2 MiB/s |  43.3 KiB |  00m00s
[20/24] python-rpm-macros-0:3.13-3.fc41 100% |   1.7 MiB/s |  17.7 KiB |  00m00s
[21/24] python3-rpm-generators-0:14-11. 100% |   2.9 MiB/s |  29.3 KiB |  00m00s
[22/24] python3-rpm-macros-0:3.13-3.fc4 100% |   1.2 MiB/s |  12.4 KiB |  00m00s
[23/24] python3-packaging-0:24.1-2.fc41 100% |  11.1 MiB/s | 125.4 KiB |  00m00s
[24/24] gcc-0:14.2.1-4.fc42.x86_64      100% |  43.1 MiB/s |  37.0 MiB |  00m01s
--------------------------------------------------------------------------------
[24/24] Total                           100% |  73.3 MiB/s |  64.9 MiB |  00m01s
Running transaction
[ 1/26] Verify package files            100% | 126.0   B/s |  24.0   B |  00m00s
[ 2/26] Prepare transaction             100% | 774.0   B/s |  24.0   B |  00m00s
[ 3/26] Installing python-rpm-macros-0: 100% |   0.0   B/s |  22.8 KiB |  00m00s
[ 4/26] Installing python3-rpm-macros-0 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 5/26] Installing libmpc-0:1.3.1-6.fc4 100% | 162.3 MiB/s | 166.2 KiB |  00m00s
[ 6/26] Installing cpp-0:14.2.1-4.fc42. 100% | 388.9 MiB/s |  35.0 MiB |  00m00s
[ 7/26] Installing pyproject-rpm-macros 100% | 108.6 MiB/s | 111.2 KiB |  00m00s
[ 8/26] Installing annobin-docs-0:12.70 100% |  48.2 MiB/s |  98.8 KiB |  00m00s
[ 9/26] Installing kernel-headers-0:6.1 100% | 233.7 MiB/s |   6.5 MiB |  00m00s
[10/26] Installing glibc-headers-x86-0: 100% | 207.8 MiB/s |   2.3 MiB |  00m00s
[11/26] Installing libxcrypt-devel-0:4. 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[12/26] Installing glibc-devel-0:2.40.9 100% |  10.1 MiB/s |  41.5 KiB |  00m00s
[13/26] Installing tzdata-0:2024a-9.fc4 100% |  71.9 MiB/s |   1.9 MiB |  00m00s
[14/26] Installing python-pip-wheel-0:2 100% | 620.8 MiB/s |   1.2 MiB |  00m00s
[15/26] Installing mpdecimal-0:2.5.1-16 100% | 201.2 MiB/s | 206.0 KiB |  00m00s
[16/26] Installing libb2-0:0.98.1-12.fc 100% |  42.3 MiB/s |  43.3 KiB |  00m00s
[17/26] Installing expat-0:2.6.3-1.fc42 100% |  57.3 MiB/s | 293.6 KiB |  00m00s
[18/26] Installing python3-libs-0:3.13. 100% | 366.9 MiB/s |  40.7 MiB |  00m00s
[19/26] Installing python3-0:3.13.0~rc3 100% |  32.8 MiB/s |  33.6 KiB |  00m00s
[20/26] Installing python3-packaging-0: 100% | 211.5 MiB/s | 433.2 KiB |  00m00s
[21/26] Installing python3-rpm-generato 100% |   0.0   B/s |  82.9 KiB |  00m00s
[22/26] Installing make-1:4.4.1-9.fc42. 100% | 300.0 MiB/s |   1.8 MiB |  00m00s
[23/26] Installing gcc-0:14.2.1-4.fc42. 100% | 435.0 MiB/s | 104.4 MiB |  00m00s
[24/26] Installing annobin-plugin-gcc-0 100% |  68.9 MiB/s | 987.3 KiB |  00m00s
[25/26] Installing gcc-plugin-annobin-0 100% |   4.4 MiB/s |  62.6 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[26/26] Installing python3-devel-0:3.13 100% |  15.2 MiB/s |   1.8 MiB |  00m00s
Complete!
Finish: build setup for python-pyhmmer-0.10.15-1.fc42.src.rpm
Start: rpmbuild python-pyhmmer-0.10.15-1.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.twoMSb
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ test -d /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ /usr/bin/rm -rf /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.i2xOS1
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ rm -rf pyhmmer-0.10.15
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyhmmer-0.10.15.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyhmmer-0.10.15
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5G7bdc
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd pyhmmer-0.10.15
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement not satisfied: setuptools >=46.4
Handling cython ~=3.0 from build-system.requires
Requirement not satisfied: cython ~=3.0
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 Copr repository                        100% | 110.0 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 235.5 KiB/s |  26.6 KiB |  00m00s
Repositories loaded.
Package "gcc-14.2.1-4.fc42.x86_64" is already installed.
Package "pyproject-rpm-macros-1.15.1-1.fc42.noarch" is already installed.
Package "python3-devel-3.13.0~rc3-1.fc42.x86_64" is already installed.
Package "python3-packaging-24.1-2.fc41.noarch" is already installed.

Package             Arch   Version       Repository      Size
Installing:
 python3-cython     x86_64 3.0.11-1.fc41 copr_base   17.7 MiB
 python3-pip        noarch 24.2-2.fc42   fedora      11.4 MiB
 python3-setuptools noarch 69.2.0-8.fc41 fedora       7.2 MiB

Transaction Summary:
 Installing:         3 packages

Total size of inbound packages is 8 MiB. Need to download 8 MiB.
After this operation, 36 MiB extra will be used (install 36 MiB, remove 0 B).
[1/3] python3-setuptools-0:69.2.0-8.fc4 100% |  15.3 MiB/s |   1.6 MiB |  00m00s
[2/3] python3-cython-0:3.0.11-1.fc41.x8 100% |  29.4 MiB/s |   3.7 MiB |  00m00s
[3/3] python3-pip-0:24.2-2.fc42.noarch  100% |  12.2 MiB/s |   2.7 MiB |  00m00s
--------------------------------------------------------------------------------
[3/3] Total                             100% |  24.0 MiB/s |   8.0 MiB |  00m00s
Running transaction
[1/5] Verify package files              100% | 120.0   B/s |   3.0   B |  00m00s
[2/5] Prepare transaction               100% | 103.0   B/s |   3.0   B |  00m00s
[3/5] Installing python3-setuptools-0:6 100% | 236.5 MiB/s |   7.3 MiB |  00m00s
[4/5] Installing python3-pip-0:24.2-2.f 100% | 233.2 MiB/s |  11.7 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[5/5] Installing python3-cython-0:3.0.1 100% | 287.4 MiB/s |  17.8 MiB |  00m00s
Warning: skipped PGP checks for 1 package from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.uuVxQz
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd pyhmmer-0.10.15
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
Handling wheel from get_requires_for_build_wheel
Requirement not satisfied: wheel
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 fedora                                 100% | 917.7 KiB/s |  26.6 KiB |  00m00s
 Copr repository                        100% | 128.3 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.2.1-4.fc42.x86_64" is already installed.
Package "pyproject-rpm-macros-1.15.1-1.fc42.noarch" is already installed.
Package "python3-devel-3.13.0~rc3-1.fc42.x86_64" is already installed.
Package "python3-packaging-24.1-2.fc41.noarch" is already installed.
Package "python3-pip-24.2-2.fc42.noarch" is already installed.
Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed.

Package        Arch   Version         Repository      Size
Installing:
 python3-wheel noarch 1:0.43.0-4.fc41 fedora     516.1 KiB

Transaction Summary:
 Installing:         1 package

Total size of inbound packages is 166 KiB. Need to download 166 KiB.
After this operation, 516 KiB extra will be used (install 516 KiB, remove 0 B).
[1/1] python3-wheel-1:0.43.0-4.fc41.noa 100% |   6.0 MiB/s | 165.8 KiB |  00m00s
--------------------------------------------------------------------------------
[1/1] Total                             100% | 921.0 KiB/s | 165.8 KiB |  00m00s
Running transaction
[1/3] Verify package files              100% |   0.0   B/s |   1.0   B |  00m00s
[2/3] Prepare transaction               100% | 250.0   B/s |   1.0   B |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[3/3] Installing python3-wheel-1:0.43.0 100% |  32.7 MiB/s | 535.1 KiB |  00m00s
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.O6GWDR
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd pyhmmer-0.10.15
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyhmmer-0.10.15.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement not satisfied: psutil ~=5.8
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.15.dist-info/
removed 'pyhmmer-0.10.15.dist-info/COPYING'
removed 'pyhmmer-0.10.15.dist-info/METADATA'
removed 'pyhmmer-0.10.15.dist-info/top_level.txt'
removed directory 'pyhmmer-0.10.15.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 fedora                                 100% | 354.8 KiB/s |  26.6 KiB |  00m00s
 Copr repository                        100% | 140.0 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.2.1-4.fc42.x86_64" is already installed.
Package "pyproject-rpm-macros-1.15.1-1.fc42.noarch" is already installed.
Package "python3-devel-3.13.0~rc3-1.fc42.x86_64" is already installed.
Package "python3-packaging-24.1-2.fc41.noarch" is already installed.
Package "python3-pip-24.2-2.fc42.noarch" is already installed.
Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed.
Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed.

Package         Arch   Version      Repository      Size
Installing:
 python3-psutil x86_64 5.9.8-5.fc42 fedora       1.4 MiB

Transaction Summary:
 Installing:         1 package

Total size of inbound packages is 272 KiB. Need to download 272 KiB.
After this operation, 1 MiB extra will be used (install 1 MiB, remove 0 B).
[1/1] python3-psutil-0:5.9.8-5.fc42.x86 100% |  13.3 MiB/s | 272.0 KiB |  00m00s
--------------------------------------------------------------------------------
[1/1] Total                             100% |   5.7 MiB/s | 272.0 KiB |  00m00s
Running transaction
[1/3] Verify package files              100% |   0.0   B/s |   1.0   B |  00m00s
[2/3] Prepare transaction               100% |  66.0   B/s |   1.0   B |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[3/3] Installing python3-psutil-0:5.9.8 100% |  85.1 MiB/s |   1.4 MiB |  00m00s
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.tE3Nye
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd pyhmmer-0.10.15
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyhmmer-0.10.15.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil ~=5.8
   (installed: psutil 5.9.8)
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.15.dist-info/
removed 'pyhmmer-0.10.15.dist-info/COPYING'
removed 'pyhmmer-0.10.15.dist-info/METADATA'
removed 'pyhmmer-0.10.15.dist-info/top_level.txt'
removed directory 'pyhmmer-0.10.15.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 fedora                                 100% | 305.9 KiB/s |  26.6 KiB |  00m00s
 Copr repository                        100% |  90.6 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Nothing to do.
Package "gcc-14.2.1-4.fc42.x86_64" is already installed.
Package "pyproject-rpm-macros-1.15.1-1.fc42.noarch" is already installed.
Package "python3-devel-3.13.0~rc3-1.fc42.x86_64" is already installed.
Package "python3-packaging-24.1-2.fc41.noarch" is already installed.
Package "python3-pip-24.2-2.fc42.noarch" is already installed.
Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed.
Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed.

Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1728345600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.TdfGxa
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ cd pyhmmer-0.10.15
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.2.0)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.11)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyhmmer-0.10.15.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil ~=5.8
   (installed: psutil 5.9.8)
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.15.dist-info/
removed 'pyhmmer-0.10.15.dist-info/COPYING'
removed 'pyhmmer-0.10.15.dist-info/METADATA'
removed 'pyhmmer-0.10.15.dist-info/top_level.txt'
removed directory 'pyhmmer-0.10.15.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vPwttC
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.15
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir
Processing /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info
  writing /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/dependency_links.txt
  writing requirements to /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
  warning: no previously-included files matching '*.pl' found under directory 'vendor'
  no previously-included directories found matching 'vendor/easel/demotic'
  no previously-included directories found matching 'vendor/easel/documentation'
  no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
  no previously-included directories found matching 'vendor/easel/miniapps'
  no previously-included directories found matching 'vendor/easel/testsuite'
  no previously-included directories found matching 'vendor/hmmer/autobuild'
  no previously-included directories found matching 'vendor/hmmer/documentation'
  no previously-included directories found matching 'vendor/hmmer/contrib'
  no previously-included directories found matching 'vendor/hmmer/profmark'
  no previously-included directories found matching 'vendor/hmmer/testsuite'
  no previously-included directories found matching 'vendor/hmmer/test-speed'
  no previously-included directories found matching 'vendor/hmmer/tutorial'
  adding license file 'COPYING'
  writing manifest file '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-modern-metadata-e8dm_17e/pyhmmer-0.10.15.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: pyhmmer
  Building wheel for pyhmmer (pyproject.toml): started
  Running command Building wheel for pyhmmer (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-cpython-313
  creating build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/utils.py -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/hmmer.py -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/__init__.py -> build/lib.linux-x86_64-cpython-313/pyhmmer
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  copying pyhmmer/tests/utils.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  copying pyhmmer/tests/test_errors.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  copying pyhmmer/tests/test_doctest.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  copying pyhmmer/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_alignment.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel
  running egg_info
  writing pyhmmer.egg-info/PKG-INFO
  writing dependency_links to pyhmmer.egg-info/dependency_links.txt
  writing requirements to pyhmmer.egg-info/requires.txt
  writing top-level names to pyhmmer.egg-info/top_level.txt
  reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
  warning: no previously-included files matching '*.pl' found under directory 'vendor'
  no previously-included directories found matching 'vendor/easel/demotic'
  no previously-included directories found matching 'vendor/easel/documentation'
  no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
  no previously-included directories found matching 'vendor/easel/miniapps'
  no previously-included directories found matching 'vendor/easel/testsuite'
  no previously-included directories found matching 'vendor/hmmer/autobuild'
  no previously-included directories found matching 'vendor/hmmer/documentation'
  no previously-included directories found matching 'vendor/hmmer/contrib'
  no previously-included directories found matching 'vendor/hmmer/profmark'
  no previously-included directories found matching 'vendor/hmmer/testsuite'
  no previously-included directories found matching 'vendor/hmmer/test-speed'
  no previously-included directories found matching 'vendor/hmmer/tutorial'
  adding license file 'COPYING'
  writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.fileobj' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.fileobj' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.fileobj' to be distributed and are
          already explicitly excluding 'pyhmmer.fileobj' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.reexports' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.reexports' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.reexports' to be distributed and are
          already explicitly excluding 'pyhmmer.reexports' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.db' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.msa' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.msa' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.seqs' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.tables' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.tables' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  copying pyhmmer/_getid.pxi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/daemon.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/daemon.pyi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/daemon.pyx -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/easel.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/easel.pyi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/easel.pyx -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/errors.pyi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/errors.pyx -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/exceptions.pxi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/plan7.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/plan7.pyi -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/plan7.pyx -> build/lib.linux-x86_64-cpython-313/pyhmmer
  copying pyhmmer/py.typed -> build/lib.linux-x86_64-cpython-313/pyhmmer
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/bsd.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/linux.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  copying pyhmmer/fileobj/util.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-x86_64-cpython-313/pyhmmer/reexports
  copying pyhmmer/tests/requirements.txt -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data
  copying pyhmmer/tests/data/README.md -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms
  copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/RF00001.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/RREFam.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/KR.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/RF00001.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/RREFam.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt2
  copying pyhmmer/tests/data/hmms/txt2/RREFam.hmm2 -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt2
  copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt2
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs
  creating build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.domtbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.scan.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables
  running build_clib
  creating build/temp.linux-x86_64-cpython-313
  generating "divsufsort.h" for divsufsort library
  copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-x86_64-cpython-313/divsufsort.h
  generating "esl_config.h" for easel library
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -c build/temp.linux-x86_64-cpython-313/have_SSE4.c -o build/temp.linux-x86_64-cpython-313/have_SSE4.o
  gcc -msse4.1 build/temp.linux-x86_64-cpython-313/have_SSE4.o -o build/temp.linux-x86_64-cpython-313/have_SSE4
  checking whether compiler can build SSE4 code... yes, but cannot run code
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_stdio_h.c -o build/temp.linux-x86_64-cpython-313/have_stdio_h.o
  checking whether <stdio.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_stdlib_h.c -o build/temp.linux-x86_64-cpython-313/have_stdlib_h.o
  checking whether <stdlib.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_string_h.c -o build/temp.linux-x86_64-cpython-313/have_string_h.o
  checking whether <string.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_inttypes_h.c -o build/temp.linux-x86_64-cpython-313/have_inttypes_h.o
  checking whether <inttypes.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_stdint_h.c -o build/temp.linux-x86_64-cpython-313/have_stdint_h.o
  checking whether <stdint.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_strings_h.c -o build/temp.linux-x86_64-cpython-313/have_strings_h.o
  checking whether <strings.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_stat_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_stat_h.o
  checking whether <sys/stat.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_types_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_types_h.o
  checking whether <sys/types.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_unistd_h.c -o build/temp.linux-x86_64-cpython-313/have_unistd_h.o
  checking whether <unistd.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_endian_h.c -o build/temp.linux-x86_64-cpython-313/have_endian_h.o
  checking whether <endian.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_netinet_in_h.c -o build/temp.linux-x86_64-cpython-313/have_netinet_in_h.o
  checking whether <netinet/in.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_param_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_param_h.o
  checking whether <sys/param.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.o
  build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory
      1 | #include "sys/sysctl.h"
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  checking whether <sys/sysctl.h> can be included... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_aligned_alloc.c -o build/temp.linux-x86_64-cpython-313/have_aligned_alloc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_aligned_alloc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_aligned_alloc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_aligned_alloc.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_aligned_alloc.c:2:14: warning: ignoring return value of ‘aligned_alloc’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { aligned_alloc(0, 0); return 0; }
        |              ^~~~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'aligned_alloc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_erfc.c -o build/temp.linux-x86_64-cpython-313/have_erfc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_erfc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_erfc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'erfc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_getpid.c -o build/temp.linux-x86_64-cpython-313/have_getpid.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_getpid.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_getpid.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'getpid' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have__mm_malloc.c -o build/temp.linux-x86_64-cpython-313/have__mm_malloc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have__mm_malloc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have__mm_malloc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function '_mm_malloc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_popen.c -o build/temp.linux-x86_64-cpython-313/have_popen.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_popen.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_popen.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_popen.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_popen.c:2:14: warning: ignoring return value of ‘popen’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { popen(NULL, NULL); return 0; }
        |              ^~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'popen' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_posix_memalign.c -o build/temp.linux-x86_64-cpython-313/have_posix_memalign.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_posix_memalign.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_posix_memalign.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_posix_memalign.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_posix_memalign.c:2:14: warning: ignoring return value of ‘posix_memalign’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { posix_memalign(NULL, 0, 0); return 0; }
        |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'posix_memalign' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_strcasecmp.c -o build/temp.linux-x86_64-cpython-313/have_strcasecmp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_strcasecmp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_strcasecmp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strcasecmp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_strsep.c -o build/temp.linux-x86_64-cpython-313/have_strsep.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_strsep.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_strsep.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strsep' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sysconf.c -o build/temp.linux-x86_64-cpython-313/have_sysconf.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_sysconf.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysconf.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'sysconf' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sysctl.c -o build/temp.linux-x86_64-cpython-313/have_sysctl.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_sysctl.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysctl.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory
      2 | #include <sys/sysctl.h>
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  cc1: some warnings being treated as errors
  checking whether function 'sysctl' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_times.c -o build/temp.linux-x86_64-cpython-313/have_times.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_times.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_times.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'times' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_fseeko.c -o build/temp.linux-x86_64-cpython-313/have_fseeko.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_fseeko.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_fseeko.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'fseeko' is available... no
  generating "p7_config.h" for hmmer library
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -c build/temp.linux-x86_64-cpython-313/have_SSE4.c -o build/temp.linux-x86_64-cpython-313/have_SSE4.o
  gcc -msse4.1 build/temp.linux-x86_64-cpython-313/have_SSE4.o -o build/temp.linux-x86_64-cpython-313/have_SSE4
  checking whether compiler can build SSE4 code... yes, but cannot run code
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_endian_h.c -o build/temp.linux-x86_64-cpython-313/have_endian_h.o
  checking whether <endian.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_inttypes_h.c -o build/temp.linux-x86_64-cpython-313/have_inttypes_h.o
  checking whether <inttypes.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_stdint_h.c -o build/temp.linux-x86_64-cpython-313/have_stdint_h.o
  checking whether <stdint.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_unistd_h.c -o build/temp.linux-x86_64-cpython-313/have_unistd_h.o
  checking whether <unistd.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_types_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_types_h.o
  checking whether <sys/types.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_netinet_in_h.c -o build/temp.linux-x86_64-cpython-313/have_netinet_in_h.o
  checking whether <netinet/in.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_param_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_param_h.o
  checking whether <sys/param.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.c -o build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.o
  build/temp.linux-x86_64-cpython-313/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory
      1 | #include "sys/sysctl.h"
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  checking whether <sys/sysctl.h> can be included... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_mkstemp.c -o build/temp.linux-x86_64-cpython-313/have_mkstemp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_mkstemp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_mkstemp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_mkstemp.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_mkstemp.c:2:14: warning: ignoring return value of ‘mkstemp’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { mkstemp(NULL); return 0; }
        |              ^~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'mkstemp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_popen.c -o build/temp.linux-x86_64-cpython-313/have_popen.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_popen.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_popen.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_popen.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_popen.c:2:14: warning: ignoring return value of ‘popen’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { popen(NULL, NULL); return 0; }
        |              ^~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'popen' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_putenv.c -o build/temp.linux-x86_64-cpython-313/have_putenv.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_putenv.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_putenv.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'putenv' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_strcasecmp.c -o build/temp.linux-x86_64-cpython-313/have_strcasecmp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_strcasecmp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_strcasecmp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strcasecmp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_strsep.c -o build/temp.linux-x86_64-cpython-313/have_strsep.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_strsep.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_strsep.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strsep' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_times.c -o build/temp.linux-x86_64-cpython-313/have_times.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_times.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_times.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'times' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_getpid.c -o build/temp.linux-x86_64-cpython-313/have_getpid.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_getpid.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_getpid.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'getpid' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sysctl.c -o build/temp.linux-x86_64-cpython-313/have_sysctl.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_sysctl.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysctl.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory
      2 | #include <sys/sysctl.h>
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  cc1: some warnings being treated as errors
  checking whether function 'sysctl' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_sysconf.c -o build/temp.linux-x86_64-cpython-313/have_sysconf.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_sysconf.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_sysconf.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'sysconf' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_getcwd.c -o build/temp.linux-x86_64-cpython-313/have_getcwd.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_getcwd.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_getcwd.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_getcwd.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-313/have_getcwd.c:2:14: warning: ignoring return value of ‘getcwd’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { getcwd(NULL, 0); return 0; }
        |              ^~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'getcwd' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_chmod.c -o build/temp.linux-x86_64-cpython-313/have_chmod.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_chmod.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_chmod.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'chmod' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_stat.c -o build/temp.linux-x86_64-cpython-313/have_stat.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_stat.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_stat.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'stat' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_fstat.c -o build/temp.linux-x86_64-cpython-313/have_fstat.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_fstat.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_fstat.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'fstat' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-313/have_erfc.c -o build/temp.linux-x86_64-cpython-313/have_erfc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-313/have_erfc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-313/have_erfc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'erfc' is available... no
  generating build/temp.linux-x86_64-cpython-313/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c
  creating build/temp.linux-x86_64-cpython-313/vendor
  creating build/temp.linux-x86_64-cpython-313/vendor/hmmer
  creating build/temp.linux-x86_64-cpython-313/vendor/hmmer/libdivsufsort
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/libdivsufsort/divsufsort.o
  ar rcs build/temp.linux-x86_64-cpython-313/libdivsufsort.a build/temp.linux-x86_64-cpython-313/vendor/hmmer/libdivsufsort/divsufsort.o
  generating build/temp.linux-x86_64-cpython-313/libeasel.a from vendor/easel/interface_lapack.c, vendor/easel/interface_gsl.c, vendor/easel/esl_wuss.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_weibull.c, vendor/easel/esl_vmx.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_varint.c, vendor/easel/esl_tree.c, vendor/easel/esl_threads.c, vendor/easel/esl_swat.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_stats.c, vendor/easel/esl_stack.c, vendor/easel/esl_ssi.c, vendor/easel/esl_sse.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sqio_ascii.c, vendor/easel/esl_sqio.c, vendor/easel/esl_sq.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_regexp.c, vendor/easel/esl_red_black.c, vendor/easel/esl_recorder.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_random.c, vendor/easel/esl_rand64.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_paml.c, vendor/easel/esl_normal.c, vendor/easel/esl_neon.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_msafile.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_msa.c, vendor/easel/esl_mpi.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_mem.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_lognormal.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_json.c, vendor/easel/esl_iset.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_huffman.c, vendor/easel/esl_hmm.c, vendor/easel/esl_histogram.c, vendor/easel/esl_heap.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_graph.c, vendor/easel/esl_gev.c, vendor/easel/esl_getopts.c, vendor/easel/esl_gencode.c, vendor/easel/esl_gamma.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_exponential.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_distance.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_cpu.c, vendor/easel/esl_composition.c, vendor/easel/esl_cluster.c, vendor/easel/esl_buffer.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_avx512.c, vendor/easel/esl_avx.c, vendor/easel/esl_arr3.c, vendor/easel/esl_arr2.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_alloc.c, vendor/easel/easel.c
  generating build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c
  creating build/temp.linux-x86_64-cpython-313/vendor/easel
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio_ncbi.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/interface_lapack.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/interface_lapack.o
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_vectorops.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vectorops.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stretchexp.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/interface_gsl.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/interface_gsl.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_wuss.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_wuss.o
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’:
  vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    216 |   if (htobe32(info[1]) != dbtype)                             status = eslEUNIMPLEMENTED;
        |                        ^~
  vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    226 |   if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
        |                                                          ^~
  vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    233 |   if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
        |                                                              ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’:
  vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    758 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’:
  vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    809 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’:
  vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    860 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’:
  vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1036 |     if (status != eslOK || nres != W) {
        |                                 ^~
  vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1059 |       if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                       ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’:
  vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1421 |   if (volume < 0 || volume > ncbi->volumes) return eslEINVAL;
        |                            ^
  vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1458 |   if (htobe32(info[1]) != dbtype)                             status = eslEFORMAT;
        |                        ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’:
  vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1513 |   if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL;
        |                      ^
  vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                         ^~
  vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                                      ^
  vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                                                     ^
  vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1524 |       if (inx < volume->start_seq || inx > volume->end_seq) {
        |               ^
  vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1524 |       if (inx < volume->start_seq || inx > volume->end_seq) {
        |                                          ^
  vendor/easel/esl_sqio_ncbi.c:1526:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1526 |         for (cnt = 0; cnt < ncbi->volumes; ++cnt) {
        |                           ^
  vendor/easel/esl_sqio_ncbi.c:1527:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1527 |           if (inx < volume->end_seq) break;
        |                   ^
  vendor/easel/esl_sqio_ncbi.c:1532:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1532 |         if (cnt >= ncbi->volumes) return eslFAIL;
        |                 ^~
  vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1539 |     if (ncbi->index_start == -1 || inx > end) {
        |                           ^~
  vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1539 |     if (ncbi->index_start == -1 || inx > end) {
        |                                        ^
  vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1564 |     if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                      ^~
  vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1572 |     if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                      ^~
  vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1581 |       if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                        ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’:
  vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1623 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1633 |     if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                     ^~
  vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1641 |     if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                     ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’:
  vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1690 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1701 |   if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                             ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’:
  vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1831 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1856 |   if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘correct_ambiguity’:
  vendor/easel/esl_sqio_ncbi.c:1924:65: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1924 |       if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                                 ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’:
  vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   2005 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2047 |   if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT;
        |                                                              ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’:
  vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2178 |   for (x = 0; x < strlen(ncbisym); ++x) {
        |                 ^
  vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2179 |     for (y = 0; y < strlen(abc->sym); ++y) {
        |                   ^
  vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2187 |     if (y >= strlen(abc->sym)) return eslEFORMAT;
        |           ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’:
  vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’:
  vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2226 |   for (x = 0; x < strlen(ncbisym); ++x) {
        |                 ^
  vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
    136 |   return status;
        |          ^~~~~~
  vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2227 |     for (y = 0; y < strlen(abc->sym); ++y) {
        |                   ^
  vendor/easel/esl_wuss.c:56:14: note: ‘status’ was declared here
     56 |   int        status;      /* success or failure return status */
        |              ^~~~~~
  vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2235 |     if (y >= strlen(abc->sym)) return eslEFORMAT;
        |           ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’:
  vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2463 |   if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT;
        |                                                             ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stopwatch.o
  vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function]
     15 | static double stopwatch_getRealTime(void);
        |               ^~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_stats.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stats.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_workqueue.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_workqueue.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_weibull.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_weibull.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_vmx.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vmx.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_stack.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stack.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_red_black.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_red_black.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_recorder.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_recorder.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_ssi.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ssi.o
  vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’:
  vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    261 |   if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; }
        |            ^~
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’:
  vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    728 |   if ((n+1) > ns->flen) ns->flen = n+1;
        |             ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’:
  vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    862 |   if (n > ns->plen) ns->plen = n;
        |         ^
  vendor/easel/esl_ssi.c:893:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    893 |         for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++)
        |                                  ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’:
  vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    941 |   if (n > ns->slen) ns->slen = n;
        |         ^
  vendor/easel/esl_ssi.c:957:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    957 |         for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) {
        |                                    ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’:
  vendor/easel/esl_ssi.c:1143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1143 |       for (i = 0; i < ns->nprimary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1161 |       for (i = 0; i < ns->nprimary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1181:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1181 |       for (i = 0; i < ns->nsecondary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1198:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1198 |       for (i = 0; i < ns->nsecondary; i++)
        |                     ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’:
  vendor/easel/esl_ssi.c:1247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1247 |           for (i = 0; i < ns->nprimary; i++)
        |                         ^
  vendor/easel/esl_ssi.c:1253:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1253 |           for (i = 0; i < ns->nsecondary; i++)
        |                         ^
  vendor/easel/esl_ssi.c: In function ‘activate_external_sort’:
  vendor/easel/esl_ssi.c:1345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1345 |   for (i = 0; i < ns->nprimary; i++) {
        |                 ^
  vendor/easel/esl_ssi.c:1364:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1364 |   for (i = 0; i < ns->nsecondary; i++)
        |                 ^
  vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1370 |   for (i = 0; i < ns->nprimary;   i++) free(ns->pkeys[i].key);
        |                 ^
  vendor/easel/esl_ssi.c:1371:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1371 |   for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key);
        |                 ^
  vendor/easel/esl_ssi.c:1372:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1372 |   for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey);
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_varint.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_varint.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ratematrix.o
  vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’:
  vendor/easel/esl_varint.c:471:11: warning: ‘grp’ may be used uninitialized [-Wmaybe-uninitialized]
    471 |   if (grp & cmask) { status = eslEOD; goto ERROR; }
        |       ~~~~^~~~~~~
  vendor/easel/esl_varint.c:461:12: note: ‘grp’ was declared here
    461 |   uint64_t grp;                     // current k-bit code group
        |            ^~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_tree.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_tree.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_randomseq.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_randomseq.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_sse.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sse.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_sqio.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_sq.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sq.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_random.o from vendor/easel/esl_random.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_random.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_random.o
  vendor/easel/esl_sq.c: In function ‘esl_sq_CreateFrom’:
  vendor/easel/esl_sq.c:104:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
    104 |       if (strlen(ss) != n) ESL_XEXCEPTION(eslEINVAL, "ss, seq lengths mismatch");
        |                      ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_CreateDigitalFrom’:
  vendor/easel/esl_sq.c:787:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
    787 |       if (strlen(ss) != sq->n) ESL_XEXCEPTION(eslEINVAL, "ss, seq lengths mismatch");
        |                      ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’:
  vendor/easel/esl_sq.c:1638:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1638 |       for (pos = 0; pos < sq->n; pos++)
        |                         ^
  vendor/easel/esl_sq.c:1647:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1647 |       for (pos = 1; pos <= sq->n; pos++)
        |                         ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_Validate’:
  vendor/easel/esl_sq.c:2023:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2023 |         if (strlen(sq->ss+1)      != sq->n) ESL_FAIL(eslFAIL, errmsg, "ss annotation length (for digital seq) doesn't agree with sq->n");
        |                                   ^~
  vendor/easel/esl_sq.c:2030:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2030 |       if (strlen(sq->seq)          != sq->n) ESL_FAIL(eslFAIL, errmsg, "text seq length doesn't agree with sq->n");
        |                                    ^~
  vendor/easel/esl_sq.c:2031:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2031 |       if (sq->ss && strlen(sq->ss) != sq->n) ESL_FAIL(eslFAIL, errmsg, "ss annotation length (for text seq) doesn't agree with sq->n");
        |                                    ^~
  vendor/easel/esl_random.c: In function ‘esl_rnd_Roll’:
  vendor/easel/esl_random.c:319:54: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    319 |   do { u = esl_random_uint32(r) / factor; } while (u >= n);
        |                                                      ^~
  vendor/easel/esl_random.c: In function ‘gamma_integer’:
  vendor/easel/esl_random.c:655:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
    655 |   for (i = 0; i < a; i++)
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_threads.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_threads.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_quicksort.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_quicksort.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_swat.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_swat.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_rand64.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rand64.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_paml.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_paml.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_subcmd.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_subcmd.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_normal.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_normal.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_stockholm.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_neon.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_neon.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msaweight.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msaweight.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_a2m.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_scorematrix.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile2.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile2.o
  vendor/easel/esl_msaweight.c: In function ‘esl_msaweight_IDFilter_adv’:
  vendor/easel/esl_msaweight.c:1035:9: warning: ‘conscols_104’ may be used uninitialized [-Wmaybe-uninitialized]
   1035 |         collect_counts(cfg, msa, conscols, ncons, ct, NULL);
        |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/easel/esl_msaweight.c:435:1: note: by argument 3 of type ‘const int *’ to ‘collect_counts.isra.0’ declared here
    435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
        | ^~~~~~~~~~~~~~
  vendor/easel/esl_msafile2.c: In function ‘msafile2_open’:
  vendor/easel/esl_msafile2.c:173:17: warning: unused variable ‘nc’ [-Wunused-variable]
    173 |   int           nc;
        |                 ^~
  In file included from vendor/easel/esl_msafile2.c:26:
  vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’:
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’
    632 |     for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                          ^~~
  vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’
    632 |     for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’
    641 |     for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                          ^~~
  vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’
    641 |     for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
        |                                           ^~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msashuffle.o
  vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’:
  vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    449 |   if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle");
        |                 ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_selex.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_mixgev.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixgev.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rootfinder.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixdchlet.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_regexp.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_regexp.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_psiblast.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_minimizer.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_minimizer.o
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized [-Wmaybe-uninitialized]
    243 |   if (opt_fx) *opt_fx = fx;
        |               ~~~~~~~~^~~~
  vendor/easel/esl_minimizer.c:119:10: note: ‘fx’ was declared here
    119 |   double fx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7:
  vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here
    118 |   double ax,bx,cx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7:
  vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here
    118 |   double ax,bx,cx;
        |                ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msacluster.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msacluster.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_phylip.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_keyhash.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_keyhash.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msa.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msa.o
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’:
  vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
     94 |   for (h = 0; h < kh->hashsize; h++)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’:
  vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    171 |   for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’:
  vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    215 |   for (h = 0; h < kh->hashsize; h++)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’:
  vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    310 |   if (kh->nkeys > 3*kh->hashsize)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘keyhash_create’:
  vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    401 |   for (i = 0; i < kh->hashsize; i++)  kh->hashtable[i] = -1;
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘key_upsize’:
  vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    491 |   for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_mem.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mem.o
  vendor/easel/esl_msa.c: In function ‘esl_msa_AddGS’:
  vendor/easel/esl_msa.c:1697:42: warning: operand of ‘?:’ changes signedness from ‘esl_pos_t’ {aka ‘long int’} to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1697 |       n2 = (vlen == -1 ? strlen(value) : vlen);
        |                                          ^~~~
  vendor/easel/esl_msa.c: In function ‘esl_msa_Validate’:
  vendor/easel/esl_msa.c:3168:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3168 |           if (strlen(msa->aseq[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: wrong length", idx);
        |                                      ^~
  vendor/easel/esl_msa.c:3175:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3175 |       if (msa->ss &&  msa->ss[idx] &&  strlen(msa->ss[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: SS wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3176:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3176 |       if (msa->sa &&  msa->sa[idx] &&  strlen(msa->sa[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: SA wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3177:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3177 |       if (msa->pp &&  msa->pp[idx] &&  strlen(msa->pp[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: PP wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3181:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3181 |   if (msa->ss_cons && strlen(msa->ss_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "SS_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3182:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3182 |   if (msa->sa_cons && strlen(msa->sa_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "SA_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3183:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3183 |   if (msa->pp_cons && strlen(msa->pp_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "PP_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3184:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3184 |   if (msa->rf      && strlen(msa->rf)      != msa->alen) ESL_FAIL(eslFAIL, errmsg, "RF wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3185:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3185 |   if (msa->mm      && strlen(msa->mm   )   != msa->alen) ESL_FAIL(eslFAIL, errmsg, "MM wrong length");
        |                                            ^~
  In function ‘phylip_interleaved_Read’,
      inlined from ‘esl_msafile_phylip_Read’ at vendor/easel/esl_msafile_phylip.c:284:56:
  vendor/easel/esl_msafile_phylip.c:452:15: warning: ‘block_alen’ may be used uninitialized [-Wmaybe-uninitialized]
    452 |       else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block");
        |               ^
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_Read’:
  vendor/easel/esl_msafile_phylip.c:422:13: note: ‘block_alen’ was declared here
    422 |   int64_t   block_alen;         /* # of residues being added by current block */
        |             ^~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_json.o from vendor/easel/esl_json.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_json.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_json.o
  In function ‘phylip_check_interleaved’,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13:
  vendor/easel/esl_msafile_phylip.c:739:16: warning: ‘nres1’ may be used uninitialized [-Wmaybe-uninitialized]
    739 |       if (nres1+nres2 == alen) break;
        |           ~~~~~^~~~~~
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  vendor/easel/esl_msafile_phylip.c:687:13: note: ‘nres1’ was declared here
    687 |   int       nres1;
        |             ^~~~~
  In function ‘phylip_deduce_namewidth’,
      inlined from ‘phylip_check_interleaved’ at vendor/easel/esl_msafile_phylip.c:747:22,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13:
  vendor/easel/esl_msafile_phylip.c:1048:10: warning: ‘ncols0’ may be used uninitialized [-Wmaybe-uninitialized]
   1048 |   for (c = ncols0-1; nres1 && c >= 0; c--)
        |        ~~^~~~~~~~~~
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  vendor/easel/esl_msafile_phylip.c:683:20: note: ‘ncols0’ was declared here
    683 |   int       ncols, ncols0;
        |                    ^~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_matrixops.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_matrixops.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_clustal.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_lognormal.o from vendor/easel/esl_lognormal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_lognormal.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_lognormal.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_iset.o from vendor/easel/esl_iset.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_iset.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_iset.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_histogram.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_histogram.o
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoCobalt’:
  vendor/easel/esl_iset.c:127:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    127 |   for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into array a
        |                 ^
  vendor/easel/esl_iset.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    131 |   for (j = 0; j < n; j++)
        |                 ^
  vendor/easel/esl_iset.c:135:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    135 |       for (i = n; i < n+nb; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biCobalt’:
  vendor/easel/esl_iset.c:209:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    209 |   for (v = 0; v < n; v++) a[v] = n-v-1;   // initialize by putting all vertices into an array
        |                 ^
  vendor/easel/esl_iset.c:213:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    213 |   for (j = 0; j <n; j++)
        |                 ^
  vendor/easel/esl_iset.c:220:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    220 |           for (i = n; i < n+nb1; i++)
        |                         ^
  vendor/easel/esl_iset.c:229:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    229 |               for (i = 2*n; i < 2*n+nb2; i++)
        |                               ^
  vendor/easel/esl_iset.c:253:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    253 |           for (i = 2*n; i < 2*n+nb2; i++)
        |                           ^
  vendor/easel/esl_iset.c:262:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    262 |               for (i = n; i < n+nb1; i++)
        |                             ^
  vendor/easel/esl_iset.c:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    287 |       for (i = 0; i < n; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoBlue’:
  vendor/easel/esl_iset.c:809:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    809 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biBlue’:
  vendor/easel/esl_iset.c:1011:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1011 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1018:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1018 |   for (i = 0; i < n; i++)  elig[i]=3;
        |                 ^
  vendor/easel/esl_iset.c:1033:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1033 |       for (i = 0; i < n; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biRandom’:
  vendor/easel/esl_iset.c:1089:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1089 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1095:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1095 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1100:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1100 |           for (j = 0; j < n; j++)
        |                         ^
  vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’:
  vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    541 |   if (rank > h->n)
        |            ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoValidate’:
  vendor/easel/esl_iset.c:1173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1173 |    for (i = 0; i < n; i++)
        |                  ^
  vendor/easel/esl_iset.c:1175:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1175 |        for (j = i+1; j < n; j++)
        |                        ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biValidate’:
  vendor/easel/esl_iset.c:1218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1218 |    for (i = 0; i < n; i++)
        |                  ^
  vendor/easel/esl_iset.c:1220:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1220 |        for (j = i+1; j < n; j++)
        |                        ^
  vendor/easel/esl_iset.c:1230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1230 |    for (i = 0; i < n; i++)
        |                  ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_afa.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_gencode.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gencode.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hyperexp.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_heap.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_heap.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_gumbel.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gumbel.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_mpi.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mpi.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_distance.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_distance.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_gamma.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gamma.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_huffman.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_huffman.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_graph.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_graph.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_fileparser.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_fileparser.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_gev.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gev.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_exponential.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_exponential.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_hmm.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hmm.o
  In file included from vendor/easel/esl_hmm.c:9:
  vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
    265 |       mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
        |                    ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
    265 |       mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
        |                    ^~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dirichlet.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_getopts.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_getopts.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dsqdata.o
  vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’:
  vendor/easel/esl_getopts.c:1391:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1391 |         if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */
        |               ^~
  vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’:
  vendor/easel/esl_dsqdata.c:255:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    255 |       if (alphatype != dd->abc_r->type)
        |                     ^~
  vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’:
  vendor/easel/esl_dsqdata.c:617:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    617 |       if (sq->n > max_seqlen) max_seqlen = sq->n;
        |                 ^
  vendor/easel/esl_dsqdata.c:618:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    618 |       n = strlen(sq->name); if (n > max_namelen) max_namelen = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:619:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    619 |       n = strlen(sq->acc);  if (n > max_acclen)  max_acclen  = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:620:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    620 |       n = strlen(sq->desc); if (n > max_desclen) max_desclen = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:677:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    677 |       if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:683:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    683 |       if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:688:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    688 |       if ( fwrite(sq->acc,  sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:693:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    693 |       if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’:
  vendor/easel/esl_dsqdata.c:1130:1: warning: control reaches end of non-void function [-Wreturn-type]
   1130 | }
        | ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_cpu.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cpu.o
  vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’:
  vendor/easel/esl_dsqdata.c:1053:1: warning: control reaches end of non-void function [-Wreturn-type]
   1053 | }
        | ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_composition.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_composition.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_cluster.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cluster.o
  vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’:
  vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    151 |    for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */
        |                  ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_bitfield.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_bitfield.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_buffer.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_buffer.o
  vendor/easel/esl_buffer.c: In function ‘esl_buffer_OpenMem’:
  vendor/easel/esl_buffer.c:433:41: warning: operand of ‘?:’ changes signedness from ‘esl_pos_t’ {aka ‘long int’} to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    433 |   bf->n       = (n == -1) ? strlen(p) : n;
        |                                         ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_avx512.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx512.o
  vendor/easel/esl_buffer.c: In function ‘esl_buffer_Read’:
  vendor/easel/esl_buffer.c:1494:23: warning: comparison of integer expressions of different signedness: ‘esl_pos_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1494 |   if (bf->n - bf->pos < nbytes)
        |                       ^
  vendor/easel/esl_buffer.c:1499:31: warning: comparison of integer expressions of different signedness: ‘esl_pos_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1499 |       else if  (bf->n-bf->pos < nbytes) return eslEOF;
        |                               ^
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_avx.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_arr3.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr3.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_arr2.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr2.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_alphabet.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alphabet.o
  vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’:
  vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    107 |   if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp");
        |                        ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_alloc.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alloc.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dmatrix.o
  generating build/temp.linux-x86_64-cpython-313/vendor/easel/easel.o from vendor/easel/easel.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/easel/easel.c -o build/temp.linux-x86_64-cpython-313/vendor/easel/easel.o
  vendor/easel/easel.c: In function ‘esl_FileNewSuffix’:
  vendor/easel/easel.c:1942:46: warning: operand of ‘?:’ changes signedness from ‘long int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1942 |   nf = (lastdot == NULL)? strlen(filename) : lastdot-filename;
        |                                              ^~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.o from build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c
  creating build/temp.linux-x86_64-cpython-313/build
  creating build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c -o build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.o
  build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c: In function ‘esl_sqascii_Open’:
  build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c:141:15: warning: unused variable ‘nc’ [-Wunused-variable]
    141 |   int         nc;
        |               ^~
  build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c:140:15: warning: unused variable ‘n’ [-Wunused-variable]
    140 |   int         n;
        |               ^
  build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c: In function ‘sqascii_Echo’:
  build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.c:1671:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1671 |       if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed");
        |                                                            ^~
  ar rcs build/temp.linux-x86_64-cpython-313/libeasel.a build/temp.linux-x86_64-cpython-313/vendor/easel/interface_lapack.o build/temp.linux-x86_64-cpython-313/vendor/easel/interface_gsl.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_wuss.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_workqueue.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_weibull.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vmx.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_vectorops.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_varint.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_tree.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_threads.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_swat.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_subcmd.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stretchexp.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stopwatch.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stats.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_stack.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ssi.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sse.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio_ncbi.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sqio.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_sq.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_scorematrix.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rootfinder.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_regexp.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_red_black.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_recorder.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_ratematrix.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_randomseq.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_random.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_rand64.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_quicksort.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_paml.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_normal.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_neon.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msaweight.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msashuffle.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_stockholm.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_selex.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_psiblast.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_phylip.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_clustal.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_afa.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile_a2m.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile2.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msafile.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msacluster.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_msa.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mpi.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixgev.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mixdchlet.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_minimizer.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_mem.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_matrixops.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_lognormal.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_keyhash.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_json.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_iset.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hyperexp.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_huffman.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_hmm.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_histogram.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_heap.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gumbel.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_graph.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gev.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_getopts.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gencode.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_gamma.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_fileparser.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_exponential.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dsqdata.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dmatrix.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_distance.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_dirichlet.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cpu.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_composition.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_cluster.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_buffer.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_bitfield.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx512.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_avx.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr3.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_arr2.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alphabet.o build/temp.linux-x86_64-cpython-313/vendor/easel/esl_alloc.o build/temp.linux-x86_64-cpython-313/vendor/easel/easel.o build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/esl_sqio_ascii.o
  generating build/temp.linux-x86_64-cpython-313/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmfile.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c
  generating build/temp.linux-x86_64-cpython-313/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/evalues.o from vendor/hmmer/src/evalues.c
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_banded.o from vendor/hmmer/src/generic_fwdback_banded.c
  creating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_fwdback_banded.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_banded.o
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/evalues.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/evalues.o
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/build.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/build.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_viterbi.o from vendor/hmmer/src/generic_viterbi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_viterbi.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_viterbi.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_null2.o from vendor/hmmer/src/generic_null2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_null2.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_null2.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/eweight.o from vendor/hmmer/src/eweight.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/eweight.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/eweight.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_vtrace.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb.o from vendor/hmmer/src/cachedb.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/cachedb.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb.o
  vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Open’:
  vendor/hmmer/src/cachedb.c:95:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
     95 |   if (db_cnt > (sizeof(db_inx)/sizeof(db_inx[0])))      return eslEFORMAT;
        |              ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_msv.o
  vendor/hmmer/src/cachedb.c:157:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    157 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb.c:158:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    158 |     if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; }
        |                   ^
  vendor/hmmer/src/cachedb.c:179:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    179 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb.c:212:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    212 |   if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt);  return eslEFORMAT; }
        |           ^~
  vendor/hmmer/src/cachedb.c:222:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    222 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb.c:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    230 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb.c:236:25: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    236 |         if (db_inx[inx] >= db->count) { printf("sort:: %d %d\n", db_inx[inx], db->count); return eslEFORMAT; }
        |                         ^~
  vendor/hmmer/src/cachedb.c:246:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    246 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Close’:
  vendor/hmmer/src/cachedb.c:284:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    284 |       for (i = 0; i < cache->db_cnt; ++i) {
        |                     ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_decoding.o from vendor/hmmer/src/generic_decoding.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_decoding.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_decoding.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/h2_io.o from vendor/hmmer/src/h2_io.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/h2_io.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/h2_io.o
  vendor/hmmer/src/h2_io.c: In function ‘h2_multiline’:
  vendor/hmmer/src/h2_io.c:213:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    213 |         if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "h2 profile write failed");   /* using fwrite lets us write fixed # of chars   */
        |                                               ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb_shard.o from vendor/hmmer/src/cachedb_shard.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/cachedb_shard.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb_shard.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_optacc.o from vendor/hmmer/src/generic_optacc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_optacc.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_optacc.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback.o
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_master’:
  vendor/hmmer/src/cachedb_shard.c:117:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    117 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    159 |   for (i = 0; i < db_cnt; ++i) db_inx[i] = 0;
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:167:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    167 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb_shard.c:191:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    191 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db_cnt %d db %d %s\n", inx, db_cnt, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb_shard.c:225:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    225 |   if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt);  return eslEFORMAT; }
        |           ^~
  vendor/hmmer/src/cachedb_shard.c:235:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    235 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:243:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    243 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:259:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    259 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:282:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    282 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Close_master’:
  vendor/hmmer/src/cachedb_shard.c:297:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    297 |       for (i = 0; i < cache->db_cnt; ++i) {
        |                     ^
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_shard’:
  vendor/hmmer/src/cachedb_shard.c:388:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    388 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    398 |   for (i = 0; i < db_cnt; i++){
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:434:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    434 |   for (i = 0; i < db_cnt; ++i) db_inx[i] = 0;
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:445:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    445 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb_shard.c:446:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    446 |     if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; }
        |                   ^
  vendor/hmmer/src/cachedb_shard.c:463:41: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    463 |         if(db_seq_count[i] % num_shards == my_shard){ //this sequence is part of database i and belongs to this node's shard
        |                                         ^~
  vendor/hmmer/src/cachedb_shard.c:475:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    475 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb_shard.c:544:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    544 |   for(i = 0; i < db_cnt; i++){
        |                ^
  vendor/hmmer/src/cachedb_shard.c:560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    560 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    568 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:585:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    585 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:615:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    615 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/heatmap.o from vendor/hmmer/src/heatmap.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/heatmap.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/heatmap.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmlogo.o from vendor/hmmer/src/hmmlogo.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmlogo.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmlogo.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_chk.o from vendor/hmmer/src/generic_fwdback_chk.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_fwdback_chk.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_chk.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_stotrace.o from vendor/hmmer/src/generic_stotrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/generic_stotrace.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_stotrace.o
  vendor/hmmer/src/generic_stotrace.c: In function ‘p7_GStochasticTrace’:
  vendor/hmmer/src/generic_stotrace.c:172:21: warning: ‘scur’ may be used uninitialized [-Wmaybe-uninitialized]
    172 |       if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
        |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/generic_stotrace.c:57:11: note: ‘scur’ was declared here
     57 |   int     scur, sprv;
        |           ^~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/emit.o from vendor/hmmer/src/emit.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/emit.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/emit.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdutils.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr_shard.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmer.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmd_search_status.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/mpisupport.o from vendor/hmmer/src/mpisupport.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/mpisupport.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/mpisupport.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/seqmodel.o from vendor/hmmer/src/seqmodel.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/seqmodel.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/seqmodel.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/logsum.o from vendor/hmmer/src/logsum.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/logsum.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/logsum.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr.o from vendor/hmmer/src/hmmdwrkr.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmdwrkr.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr_shard.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_builder.o from vendor/hmmer/src/p7_builder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_builder.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_builder.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelconfig.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/tracealign.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/errors.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/errors.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxb.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelstats.o from vendor/hmmer/src/modelstats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/modelstats.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelstats.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxchk.o from vendor/hmmer/src/p7_gmxchk.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_gmxchk.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxchk.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmd_search_stats.o from vendor/hmmer/src/p7_hmmd_search_stats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_hmmd_search_stats.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmd_search_stats.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domain.o
  vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Serialize’:
  vendor/hmmer/src/p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     89 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     97 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    103 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    109 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    115 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    205 |     for (i = 0; i < obj->nhits; i++)
        |                   ^
  vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Deserialize’:
  vendor/hmmer/src/p7_hmmd_search_stats.c:258:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    258 |   ret_obj->elapsed = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:264:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    264 |   ret_obj->user = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:270:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    270 |   ret_obj->sys = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:276:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    276 |   ret_obj->Z = *((double *) &host_64bit);
        |                 ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:282:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    282 |   ret_obj->domZ = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:380:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    380 |     for (i = 1; i < ret_obj->nhits; i++)
        |                   ^
  vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’:
  vendor/hmmer/src/p7_domain.c:228:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    228 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:235:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    235 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:240:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    240 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:245:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    245 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:250:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    250 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:255:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    255 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’:
  vendor/hmmer/src/p7_domain.c:379:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    379 |   ret_obj->envsc = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:385:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    385 |   ret_obj->domcorrection = *((float *) &host_32bit);
        |                             ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:391:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    391 |   ret_obj->dombias = *((float *) &host_32bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:397:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    397 |   ret_obj->oasc = *((float *) &host_32bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:403:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    403 |   ret_obj->bitscore = *((float *) &host_32bit);
        |                        ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:409:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    409 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:436:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    436 |       ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
        |                                     ~^~~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hit.o from vendor/hmmer/src/p7_hit.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_hit.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hit.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmwindow.o from vendor/hmmer/src/p7_hmmwindow.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_hmmwindow.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmwindow.o
  vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Serialize’:
  vendor/hmmer/src/p7_hit.c:287:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    287 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:292:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    292 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:297:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    297 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:302:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    302 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:307:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    307 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:312:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    312 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:317:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    317 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:322:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    322 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Deserialize’:
  vendor/hmmer/src/p7_hit.c:471:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    471 |   ret_obj->sortkey = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:477:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    477 |   ret_obj->score = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:483:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    483 |   ret_obj->pre_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:489:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    489 |   ret_obj->sum_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:495:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    495 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:501:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    501 |   ret_obj->pre_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:507:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    507 |   ret_obj->sum_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:513:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    513 |   ret_obj->nexpected = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_alidisplay.o from vendor/hmmer/src/p7_alidisplay.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_alidisplay.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_alidisplay.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_pipeline.o from vendor/hmmer/src/p7_pipeline.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_pipeline.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_pipeline.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domaindef.o from vendor/hmmer/src/p7_domaindef.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_domaindef.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domaindef.o
  vendor/hmmer/src/p7_alidisplay.c: In function ‘p7_alidisplay_Deserialize’:
  vendor/hmmer/src/p7_alidisplay.c:725:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
    725 |   if(ret_obj->memsize < (obj_size - SER_BASE_SIZE)){  // ret_obj doesn't have enough space for this P7_ALIDISPLAY
        |                       ^
  vendor/hmmer/src/p7_alidisplay.c:885:29: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
    885 |   if(mem_ptr - ret_obj->mem != (obj_size - SER_BASE_SIZE)){
        |                             ^~
  In file included from vendor/hmmer/src/p7_pipeline.c:15:
  vendor/hmmer/src/p7_pipeline.c: In function ‘p7_pli_postSSV_LongTarget’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’
   1407 |            p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len );
        |                                                             ^~~~~~~
  vendor/easel/easel.h:431:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                          ^~~
  vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’
   1407 |            p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len );
        |                                                             ^~~~~~~
  vendor/hmmer/src/p7_pipeline.c:1408:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1408 |          } while (new_len > max_window_len);
        |                           ^
  vendor/hmmer/src/p7_pipeline.c: In function ‘p7_Pipeline_LongTarget’:
  vendor/hmmer/src/p7_pipeline.c:1655:46: warning: operand of ‘?:’ changes signedness from ‘int64_t’ {aka ‘long int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1655 |             (fmf != NULL ? seq_start       : sq->start),
        |                                              ^~~~~~~~~
  vendor/hmmer/src/p7_pipeline.c:1660:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1660 |             (fmf != NULL ? seq_data.length : -1),
        |                                              ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmm.o from vendor/hmmer/src/p7_hmm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_hmm.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmm.o
  vendor/hmmer/src/p7_domaindef.c: In function ‘rescore_isolated_domain’:
  vendor/hmmer/src/p7_domaindef.c:932:5: warning: ‘orig_L’ may be used uninitialized [-Wmaybe-uninitialized]
    932 |     p7_oprofile_ReconfigRestLength(om, orig_L);
        |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domaindef.c:827:18: note: ‘orig_L’ was declared here
    827 |   int            orig_L;
        |                  ^~~~~~
  vendor/hmmer/src/p7_hmm.c: In function ‘p7_hmm_Validate’:
  vendor/hmmer/src/p7_hmm.c:1282:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1282 |   if (hmm->flags & p7H_RF)   { if (hmm->rf == NULL        || strlen(hmm->rf)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_RF flag up, but rf string is invalid");            }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1285:86: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1285 |   if (hmm->flags & p7H_MMASK) { if (hmm->mm == NULL        || strlen(hmm->mm)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_MMASK flag up, but mm string is invalid");            }
        |                                                                                      ^~
  vendor/hmmer/src/p7_hmm.c:1288:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1288 |   if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CONS flag up, but consensus string is invalid");   }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1291:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1291 |   if (hmm->flags & p7H_CS)   { if (hmm->cs == NULL        || strlen(hmm->cs)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CS flag up, but cs string is invalid");   }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1294:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1294 |   if (hmm->flags & p7H_CA)   { if (hmm->ca == NULL        || strlen(hmm->ca)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CA flag up, but ca string is invalid");   }
        |                                                                                     ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gbands.o from vendor/hmmer/src/p7_gbands.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_gbands.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gbands.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmx.o from vendor/hmmer/src/p7_gmx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_gmx.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmx.o
  In file included from vendor/hmmer/src/hmmer.h:42,
                   from vendor/hmmer/src/p7_gmx.c:11:
  vendor/hmmer/src/p7_gmx.c: In function ‘p7_gmx_GrowTo’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’
    144 |       gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR);
        |                    ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’
    144 |       gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR);
        |                    ^~~~~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmcache.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_prior.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_spensemble.o from vendor/hmmer/src/p7_spensemble.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_spensemble.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_spensemble.o
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’:
  vendor/hmmer/src/p7_hmmcache.c:111:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    111 |   for (i = 0; i < cache->n; i++)
        |                 ^
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’:
  vendor/hmmer/src/p7_hmmcache.c:139:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    139 |   for (i = 0; i < cache->n; i++)
        |                 ^
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’:
  vendor/hmmer/src/p7_hmmcache.c:162:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    162 |       for (i = 0; i < cache->n; i++)
        |                     ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_bg.o from vendor/hmmer/src/p7_bg.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_bg.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_bg.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_alphabet.o from vendor/hmmer/src/fm_alphabet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/fm_alphabet.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_alphabet.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_profile.o from vendor/hmmer/src/p7_profile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_profile.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_profile.o
  In file included from vendor/hmmer/src/p7_spensemble.c:7:
  vendor/hmmer/src/p7_spensemble.c: In function ‘p7_spensemble_Cluster’:
  vendor/hmmer/src/p7_spensemble.c:344:43: warning: ‘imax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:7: note: ‘imax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |       ^~~~
  vendor/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmin’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:13: note: ‘jmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |             ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:19: note: ‘kmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                   ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:25: note: ‘mmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                         ^~~~
  vendor/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:13: note: ‘jmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |             ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:19: note: ‘kmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                   ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:25: note: ‘mmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                         ^~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_general.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/vitfilter.o from vendor/hmmer/src/impl_sse/vitfilter.c
  creating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/vitfilter.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/vitfilter.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_tophits.o from vendor/hmmer/src/p7_tophits.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_tophits.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_tophits.o
  vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’:
  vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    292 |   if (ranges[lo].lower > end)     return -1;
        |                        ^
  vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    293 |   if (ranges[hi].upper < start)   return -1;
        |                        ^
  vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    297 |     if      (ranges[mid].lower   < start)  lo = mid + 1; // too far left
        |                                  ^
  vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    302 |   if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
        |                                          ^~
  vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    302 |   if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
        |                                                                         ^~
  vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    303 |   else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
        |                                          ^~
  vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    303 |   else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
        |                                                                         ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’:
  vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    350 |         while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
        |                    ^~
  vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    350 |         while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
        |                                                                                                  ^~
  In file included from vendor/hmmer/src/fm_general.c:12:
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
    351 |           int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
        |                       ^~~~~~~
  vendor/easel/easel.h:432:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
    351 |           int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
        |                       ^~~~~~~
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
    352 |           int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
        |                       ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
    352 |           int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
        |                       ^~~~~~~
  vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    353 |           for (j= start; j<=end; j++)
        |                           ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’:
  vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    537 |      (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) ||
        |                                                                           ^~
  vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    538 |      (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp)  != compressed_bytes) ||
        |                                                                    ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’:
  vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    620 |   for (i=0; i<meta->seq_count; i++) {
        |              ^
  vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    638 |         fread(meta->seq_data[i].name,   sizeof(char), meta->seq_data[i].name_length+1   , meta->fp) !=  meta->seq_data[i].name_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    639 |         fread(meta->seq_data[i].acc,    sizeof(char), meta->seq_data[i].acc_length+1    , meta->fp) !=  meta->seq_data[i].acc_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    640 |         fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) !=  meta->seq_data[i].source_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    641 |         fread(meta->seq_data[i].desc,   sizeof(char), meta->seq_data[i].desc_length+1   , meta->fp) !=  meta->seq_data[i].desc_length+1
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    651 |   for (i=0; i<meta->ambig_list->count; i++) {
        |              ^
  vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    663 |     for (i=0; i<meta->seq_count; i++)
        |                ^
  vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’:
  vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    727 |     for (i=0; i<meta->seq_count; i++) {
        |                ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Clone’:
  vendor/hmmer/src/p7_tophits.c:92:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     92 |   for (i = 0; i < h2->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c:100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    100 |   for (i = 0; i < h2->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Grow’:
  vendor/hmmer/src/p7_tophits.c:143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    143 |       for (i = 0; i < h->N; i++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySortkey’:
  vendor/hmmer/src/p7_tophits.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    398 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySeqidxAndAlipos’:
  vendor/hmmer/src/p7_tophits.c:431:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    431 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortByModelnameAndAlipos’:
  vendor/hmmer/src/p7_tophits.c:452:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    452 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Merge’:
  vendor/hmmer/src/p7_tophits.c:496:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    496 |   for (i = 0; i < h1->N; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    504 |   for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++)
        |                       ^
  vendor/hmmer/src/p7_tophits.c:504:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    504 |   for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++)
        |                                    ^
  vendor/hmmer/src/p7_tophits.c:506:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    506 |   while (i < h1->N) new_hit[k++] = h1->hit[i++];
        |            ^
  vendor/hmmer/src/p7_tophits.c:507:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    507 |   while (j < h2->N) new_hit[k++] = new2 + (h2->hit[j++] - h2->unsrt);
        |            ^
  vendor/hmmer/src/p7_tophits.c:511:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    511 |   for (i = 0; i < h2->N; i++)
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/optacc.o from vendor/hmmer/src/impl_sse/optacc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/optacc.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/optacc.o
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxPositionLength’:
  vendor/hmmer/src/p7_tophits.c:559:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    559 |   for (i = 0; i < h->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxNameLength’:
  vendor/hmmer/src/p7_tophits.c:589:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    589 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxAccessionLength’:
  vendor/hmmer/src/p7_tophits.c:608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    608 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxShownLength’:
  vendor/hmmer/src/p7_tophits.c:630:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    630 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Reuse’:
  vendor/hmmer/src/p7_tophits.c:663:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    663 |     for (i = 0; i < h->N; i++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Destroy’:
  vendor/hmmer/src/p7_tophits.c:693:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    693 |     for (i = 0; i < h->N; i++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c: In function ‘workaround_bug_h74’:
  vendor/hmmer/src/p7_tophits.c:762:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    762 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_ComputeNhmmerEvalues’:
  vendor/hmmer/src/p7_tophits.c:800:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    800 |   for (i = 0; i < th->N ; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_RemoveDuplicates’:
  vendor/hmmer/src/p7_tophits.c:836:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    836 |   for (i = 1; i < th->N; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Threshold’:
  vendor/hmmer/src/p7_tophits.c:935:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    935 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    956 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:974:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    974 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:991:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    991 |   for (h = 0; h < th->N; h++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_CompareRanking’:
  vendor/hmmer/src/p7_tophits.c:1069:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1069 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:1085:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1085 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’:
  vendor/hmmer/src/p7_tophits.c:1173:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1173 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Domains’:
  vendor/hmmer/src/p7_tophits.c:1289:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1289 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Alignment’:
  vendor/hmmer/src/p7_tophits.c:1528:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1528 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:1554:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1554 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularTargets’:
  vendor/hmmer/src/p7_tophits.c:1643:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1643 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularDomains’:
  vendor/hmmer/src/p7_tophits.c:1736:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1736 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularXfam’:
  vendor/hmmer/src/p7_tophits.c:1838:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1838 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:1872:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1872 |       for (h = 0; h < th->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c:1893:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1893 |       for (h = 0; h < th->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c:1927:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1927 |       for (h = 0; h < domHitlist->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_AliScores’:
  vendor/hmmer/src/p7_tophits.c:1980:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1980 |   for (h = 0; h < th->N; h++) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_sse.o from vendor/hmmer/src/fm_sse.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/fm_sse.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_sse.o
  vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCount’:
  vendor/hmmer/src/fm_sse.c:201:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    201 |   if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom
        |                ^~
  vendor/hmmer/src/fm_sse.c:218:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    218 |   else if ( b_pos !=  sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b) )
        |                   ^~
  vendor/hmmer/src/fm_sse.c:221:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    221 |   if ( landmark < fm->N || landmark == -1 ) {
        |                 ^
  vendor/hmmer/src/fm_sse.c:342:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    342 |   if (c==0 && pos >= fm->term_loc) { // I overcounted 'A' by one, because '$' was replaced with an 'A'
        |                   ^~
  vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCountLT’:
  vendor/hmmer/src/fm_sse.c:389:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    389 |   if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom
        |                ^~
  vendor/hmmer/src/fm_sse.c:404:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    404 |   } else if ( b_pos !=  sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b))  {
        |                     ^~
  vendor/hmmer/src/fm_sse.c:413:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    413 |   if ( landmark < fm->N - 1 || landmark == -1 ) {
        |                 ^
  vendor/hmmer/src/fm_sse.c:610:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    610 |   if ( pos >= fm->term_loc) {
        |            ^~
  In file included from /usr/include/stdio.h:970,
                   from vendor/easel/easel.h:22,
                   from vendor/hmmer/src/p7_tophits.c:16:
  In function ‘fprintf’,
      inlined from ‘p7_tophits_Targets’ at vendor/hmmer/src/p7_tophits.c:1200:12:
  /usr/include/bits/stdio2.h:111:10: warning: ‘posw’ may be used uninitialized [-Wmaybe-uninitialized]
    111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
        |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    112 |                         __va_arg_pack ());
        |                         ~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’:
  vendor/hmmer/src/p7_tophits.c:1126:10: note: ‘posw’ was declared here
   1126 |   int    posw;
        |          ^~~~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/stotrace.o from vendor/hmmer/src/impl_sse/stotrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/stotrace.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/stotrace.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_ssv.o from vendor/hmmer/src/fm_ssv.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/fm_ssv.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_ssv.o
  In function ‘get_postprob’,
      inlined from ‘p7_OATrace’ at vendor/hmmer/src/impl_sse/optacc.c:254:18:
  vendor/hmmer/src/impl_sse/optacc.c:269:21: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    269 |   int     q     = (k-1) % Q;            /* (q,r) is position of the current DP cell M(i,k) */
        |                   ~~^~~
  vendor/hmmer/src/impl_sse/optacc.c: In function ‘p7_OATrace’:
  vendor/hmmer/src/impl_sse/optacc.c:396:16: note: ‘kmax’ was declared here
    396 |   int    smax, kmax;
        |                ^~~~
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_mergeSeeds’:
  vendor/hmmer/src/fm_ssv.c:70:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     70 |           && ( next.n - next.k) == curr_diagval                 //overlapping diagonals will share the same value of (n - k)
        |                                 ^~
  vendor/hmmer/src/fm_ssv.c:71:35: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     71 |           && next.n + next.length < curr_n + curr_len + ssv_length       //overlapping, or close to it
        |                                   ^
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_backtrackSeed’:
  vendor/hmmer/src/fm_ssv.c:134:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    134 |   while ( j != fmf->term_loc && (j % fm_cfg->meta->freq_SA)) { //go until we hit a position in the full SA that was sampled during FM index construction
        |             ^~
  vendor/hmmer/src/fm_ssv.c:141:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    141 |   return len + (j==fmf->term_loc ? 0 : fmf->SA[ j / fm_cfg->meta->freq_SA ]) ; // len is how many backward steps we had to take to find a sampled SA position
        |                  ^~
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_extendSeed’:
  vendor/hmmer/src/fm_ssv.c:664:18: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    664 |   if (target_end > fm->N-2) {
        |                  ^
  vendor/hmmer/src/fm_ssv.c:678:14: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    678 |   for (  ; k <= model_end; k++, n++) {
        |              ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/null2.o from vendor/hmmer/src/impl_sse/null2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/null2.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/null2.o
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5:
  vendor/hmmer/src/fm_ssv.c:695:32: warning: ‘max_hit_start’ may be used uninitialized [-Wmaybe-uninitialized]
    695 |   diag->k       = model_start  + max_hit_start - 1;
        |                   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  vendor/hmmer/src/fm_ssv.c:647:22: note: ‘max_hit_start’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                      ^~~~~~~~~~~~~
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5:
  vendor/hmmer/src/fm_ssv.c:696:31: warning: ‘max_hit_end’ may be used uninitialized [-Wmaybe-uninitialized]
    696 |   diag->length  = max_hit_end - max_hit_start + 1;
        |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  vendor/hmmer/src/fm_ssv.c:647:37: note: ‘max_hit_end’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                                     ^~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/p7_hmmfile.o from build/temp.linux-x86_64-cpython-313/p7_hmmfile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c build/temp.linux-x86_64-cpython-313/p7_hmmfile.c -o build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/p7_hmmfile.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_trace.o
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c: In function ‘p7_hmmfile_WriteBinary’:
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1026:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1026 |     if (fwrite((char *) hmm->mat[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                      ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1028:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1028 |     if (fwrite((char *) hmm->ins[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                      ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1037:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1037 |   if ((hmm->flags & p7H_RF)   && (fwrite((char *) hmm->rf,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1038:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1038 |   if ((hmm->flags & p7H_MMASK)&& (fwrite((char *) hmm->mm,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1039:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1039 |   if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* don't need to test for >=3e format; p7H_CONS flag suffices (didn't exist pre-3e) */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1040:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1040 |   if ((hmm->flags & p7H_CS)   && (fwrite((char *) hmm->cs,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1041:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1041 |   if ((hmm->flags & p7H_CA)   && (fwrite((char *) hmm->ca,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1047:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1047 |   if ((hmm->flags & p7H_MAP)  && (fwrite((char *) hmm->map,       sizeof(int),  hmm->M+1, fp) != hmm->M+1)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:1064:96: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1064 |   if ((hmm->flags & p7H_COMPO) && (fwrite((char *) hmm->compo, sizeof(float), hmm->abc->K, fp) != hmm->abc->K)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                                ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c: In function ‘multiline’:
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:2022:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2022 |   if (fwrite(sptr, sizeof(char), n, fp)    != n) ESL_EXCEPTION_SYS(eslEWRITE, "hmm write failed");  /* using fwrite lets us write fixed # of chars   */
        |                                            ^~
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c: In function ‘write_bin_string’:
  build/temp.linux-x86_64-cpython-313/p7_hmmfile.c:2145:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2145 |       if (fwrite((char *) s,    sizeof(char), len, fp) != len) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                        ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/ssvfilter.o from vendor/hmmer/src/impl_sse/ssvfilter.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/ssvfilter.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/ssvfilter.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/msvfilter.o from vendor/hmmer/src/impl_sse/msvfilter.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/msvfilter.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/msvfilter.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_scoredata.o from vendor/hmmer/src/p7_scoredata.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/p7_scoredata.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_scoredata.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmpgmd2msa.o from vendor/hmmer/src/hmmpgmd2msa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/hmmpgmd2msa.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmpgmd2msa.o
  vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2msa’:
  vendor/hmmer/src/hmmpgmd2msa.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    131 |   for (i = 0; i < stats->nhits; ++i) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:144:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    144 |   for (i=0; i<stats->nhits; i++) {
        |              ^
  vendor/hmmer/src/hmmpgmd2msa.c:163:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    163 |     for (i = 0; i < th->N; i++) {
        |                   ^
  vendor/hmmer/src/hmmpgmd2msa.c:172:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    172 |   for (i = 0; i < th->N; i++) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2stats_old’:
  vendor/hmmer/src/hmmpgmd2msa.c:311:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    311 |   for (i=0; i<stats->nhits; i++) {
        |              ^
  vendor/hmmer/src/hmmpgmd2msa.c:327:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    327 |   for (i = 0; i < th.N; i++)
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:450:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    450 |   for (i = 0; i < th.N; i++) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:473:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    473 |   for (i = 0; i < th.N; i++) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/mpi.o from vendor/hmmer/src/impl_sse/mpi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/mpi.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/mpi.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/io.o from vendor/hmmer/src/impl_sse/io.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/io.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/io.o
  vendor/hmmer/src/impl_sse/io.c: In function ‘p7_oprofile_Write’:
  vendor/hmmer/src/impl_sse/io.c:101:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    101 |   if (fwrite((char *) om->name,         sizeof(char),     n+1,         ffp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:111:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    111 |     if (fwrite( (char *) om->sbv[x],    sizeof(__m128i),  Q16x,        ffp) != Q16x)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:114:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    114 |     if (fwrite( (char *) om->rbv[x],    sizeof(__m128i),  Q16,         ffp) != Q16)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:126:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    126 |   if (fwrite((char *) om->name,         sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:134:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    134 |     if (fwrite((char *) om->acc,        sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:143:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    143 |     if (fwrite((char *) om->desc,       sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:146:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    146 |   if (fwrite((char *) om->rf,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:147:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    147 |   if (fwrite((char *) om->mm,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:148:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    148 |   if (fwrite((char *) om->cs,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:149:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    149 |   if (fwrite((char *) om->consensus,    sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:152:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    152 |   if (fwrite((char *) om->twv,             sizeof(__m128i),  8*Q8,        pfp) != 8*Q8)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                                ^~
  vendor/hmmer/src/impl_sse/io.c:154:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    154 |     if (fwrite( (char *) om->rwv[x],       sizeof(__m128i),  Q8,          pfp) != Q8)          ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                                ^~
  vendor/hmmer/src/impl_sse/io.c:163:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    163 |   if (fwrite((char *) om->tfv,          sizeof(__m128),   8*Q4,        pfp) != 8*Q4)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:165:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    165 |     if (fwrite( (char *) om->rfv[x],    sizeof(__m128),   Q4,          pfp) != Q4)          ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/fwdback.o from vendor/hmmer/src/impl_sse/fwdback.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/fwdback.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/fwdback.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/decoding.o from vendor/hmmer/src/impl_sse/decoding.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/decoding.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/decoding.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_oprofile.o from vendor/hmmer/src/impl_sse/p7_oprofile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/p7_oprofile.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_oprofile.o
  generating build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_omx.o from vendor/hmmer/src/impl_sse/p7_omx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-313 -I/usr/include/python3.13 -c vendor/hmmer/src/impl_sse/p7_omx.c -o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_omx.o
  ar rcs build/temp.linux-x86_64-cpython-313/libhmmer.a build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/build.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/cachedb_shard.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/emit.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/errors.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/evalues.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/eweight.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_decoding.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_chk.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_fwdback_banded.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_null2.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_msv.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_optacc.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_stotrace.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_viterbi.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/generic_vtrace.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/h2_io.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/heatmap.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmlogo.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdmstr_shard.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmd_search_status.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdwrkr_shard.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmdutils.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmer.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/logsum.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelconfig.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/modelstats.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/mpisupport.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/seqmodel.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/tracealign.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_alidisplay.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_bg.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_builder.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domain.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_domaindef.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gbands.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmx.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxb.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_gmxchk.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hit.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmm.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmcache.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmd_search_stats.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_hmmwindow.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_pipeline.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_prior.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_profile.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_spensemble.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_tophits.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_trace.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/p7_scoredata.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/hmmpgmd2msa.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_alphabet.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_general.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_sse.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/fm_ssv.o build/temp.linux-x86_64-cpython-313/build/temp.linux-x86_64-cpython-313/p7_hmmfile.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/vitfilter.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/stotrace.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/ssvfilter.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_oprofile.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/p7_omx.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/optacc.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/null2.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/msvfilter.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/mpi.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/io.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/fwdback.o build/temp.linux-x86_64-cpython-313/vendor/hmmer/src/impl_sse/decoding.o
  running build_ext
  Building HMMER with SSE for CPU architecture: 'x86_64'
  performance hint: pyhmmer/exceptions.pxi:45:5: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  performance hint: pyhmmer/exceptions.pxi:45:5: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  Compiling pyhmmer/errors.pyx because it changed.
  Compiling pyhmmer/easel.pyx because it changed.
  Compiling pyhmmer/plan7.pyx because it changed.
  Compiling pyhmmer/daemon.pyx because it changed.
  [1/4] Cythonizing pyhmmer/daemon.pyx
  [2/4] Cythonizing pyhmmer/easel.pyx
  [3/4] Cythonizing pyhmmer/errors.pyx
  [4/4] Cythonizing pyhmmer/plan7.pyx
  checking whether `PyInterpreterState_GetID` is available
  creating builddir
  creating builddir/build
  creating builddir/build/BUILD
  creating builddir/build/BUILD/python-pyhmmer-0.10.15-build
  creating builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15
  creating builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/build
  creating builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/build/temp.linux-x86_64-cpython-313
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/build/temp.linux-x86_64-cpython-313/have_getidxgg9_9ia.c -o builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/build/temp.linux-x86_64-cpython-313/have_getidxgg9_9ia.o -Werror=implicit-function-declaration
  yes
  building pyhmmer.errors for linux-x86_64 with unix compiler
  building 'pyhmmer.errors' extension
  creating build/temp.linux-x86_64-cpython-313/pyhmmer
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-313 -Ivendor/easel -I/usr/include/python3.13 -c pyhmmer/errors.c -o build/temp.linux-x86_64-cpython-313/pyhmmer/errors.o -msse4.1 -Wno-unused-variable
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/pyhmmer/errors.o build/temp.linux-x86_64-cpython-313/libeasel.a -Lbuild/temp.linux-x86_64-cpython-313 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-313 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-313/pyhmmer/errors.cpython-313-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.easel for linux-x86_64 with unix compiler
  building 'pyhmmer.easel' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-313 -Ivendor/easel -I/usr/include/python3.13 -c pyhmmer/easel.c -o build/temp.linux-x86_64-cpython-313/pyhmmer/easel.o -msse4.1 -Wno-unused-variable
  In file included from pyhmmer/easel.c:1283:
  pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’:
  pyhmmer/fileobj/linux.h:54:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     54 |     if (len > size) {
        |             ^
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/pyhmmer/easel.o build/temp.linux-x86_64-cpython-313/libeasel.a -Lbuild/temp.linux-x86_64-cpython-313 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-313 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-313/pyhmmer/easel.cpython-313-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.plan7 for linux-x86_64 with unix compiler
  building 'pyhmmer.plan7' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-313 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.13 -c pyhmmer/plan7.c -o build/temp.linux-x86_64-cpython-313/pyhmmer/plan7.o -msse4.1 -Wno-unused-variable
  In file included from pyhmmer/plan7.c:1281:
  pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’:
  pyhmmer/fileobj/linux.h:54:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     54 |     if (len > size) {
        |             ^
  pyhmmer/plan7.c: In function ‘__pyx_f_8libhmmer_6nhmmer_idlen_list_assign’:
  pyhmmer/plan7.c:20293:30: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  20293 |       __pyx_t_5 = (__pyx_v_j < __pyx_v_l->count);
        |                              ^
  pyhmmer/plan7.c:20309:28: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  20309 |     __pyx_t_4 = (__pyx_v_j == __pyx_v_l->count);
        |                            ^~
  pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_21OptimizedProfileBlock__allocate’:
  pyhmmer/plan7.c:62601:66: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  62601 |     for (__pyx_t_10 = __pyx_v_self->_block->listSize; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
        |                                                                  ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_search_hmm’:
  pyhmmer/plan7.c:72285:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  72285 |   __pyx_t_6 = (__pyx_t_10 > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                           ^
  pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_8Pipeline__search_loop_file’:
  pyhmmer/plan7.c:74125:36: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  74125 |       __pyx_t_1 = (__pyx_v_dbsq->L > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                    ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_0__pyx_f_7pyhmmer_5plan7_8Pipeline_scan_seq’:
  pyhmmer/plan7.c:75402:49: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  75402 |   __pyx_t_7 = (__pyx_v_query->__pyx_base._sq->n > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                                 ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_scan_seq’:
  pyhmmer/plan7.c:75795:49: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  75795 |   __pyx_t_6 = (__pyx_v_query->__pyx_base._sq->n > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                                 ^
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/pyhmmer/plan7.o build/temp.linux-x86_64-cpython-313/libhmmer.a build/temp.linux-x86_64-cpython-313/libeasel.a build/temp.linux-x86_64-cpython-313/libdivsufsort.a -Lbuild/temp.linux-x86_64-cpython-313 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-313 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-313/pyhmmer/plan7.cpython-313-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.daemon for linux-x86_64 with unix compiler
  building 'pyhmmer.daemon' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-313 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.13 -c pyhmmer/daemon.c -o build/temp.linux-x86_64-cpython-313/pyhmmer/daemon.o -msse4.1 -Wno-unused-variable
  pyhmmer/daemon.c: In function ‘__pyx_f_8libhmmer_6nhmmer_idlen_list_assign’:
  pyhmmer/daemon.c:14158:30: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  14158 |       __pyx_t_5 = (__pyx_v_j < __pyx_v_l->count);
        |                              ^
  pyhmmer/daemon.c:14174:28: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  14174 |     __pyx_t_4 = (__pyx_v_j == __pyx_v_l->count);
        |                            ^~
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/pyhmmer/daemon.o build/temp.linux-x86_64-cpython-313/libhmmer.a build/temp.linux-x86_64-cpython-313/libeasel.a build/temp.linux-x86_64-cpython-313/libdivsufsort.a -Lbuild/temp.linux-x86_64-cpython-313 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-313 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-313/pyhmmer/daemon.cpython-313-x86_64-linux-gnu.so -msse4.1 -g1
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/daemon.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/plan7.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/easel.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/errors.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/p7_tophits.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/p7_tophits.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/p7_hmmfile.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/p7_hmmfile.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/esl_sqio_ascii.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/esl_sqio_ascii.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/reexports/__init__.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  creating build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/util.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/linux.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/linux.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/bsd.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/bsd.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/fileobj/__init__.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/py.typed -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/plan7.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/plan7.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/plan7.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/exceptions.pxi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/errors.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/errors.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/easel.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/easel.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/easel.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/daemon.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/daemon.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/daemon.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/_getid.pxi -> build/bdist.linux-x86_64/wheel/pyhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/bmyD3.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/bmyD2.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/bmyD1.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/RREFam.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/RREFam.scan.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/RREFam.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/PF02826.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/PF02826.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/bmyD.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/PKSI.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/LuxC.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa/laccase.clw -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa/LuxC.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/msa/LuxC.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt2/RREFam.hmm2 -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/RREFam.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/RF00001.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/txt/KR.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/RREFam.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin/RREFam.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin/RF00001.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/hmms/make.sh -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/data/README.md -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/requirements.txt -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_alphabet.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_bitfield.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_block.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_gencode.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_keyhash.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_matrix.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_msa.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_msafile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_randomness.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_sequence.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_sequencefile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_ssi.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_easel/test_vector.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_alignment.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_background.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_block.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_builder.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_hit.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_hmm.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_hmmfile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_pipeline.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_profile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_tophits.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_tracealigner.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_plan7/test_traces.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_doctest.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_errors.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/test_hmmer.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/tests/utils.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/hmmer.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-313/pyhmmer/utils.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  running install_egg_info
  Copying pyhmmer.egg-info to build/bdist.linux-x86_64/wheel/pyhmmer-0.10.15-py3.13.egg-info
  running install_scripts
  creating build/bdist.linux-x86_64/wheel/pyhmmer-0.10.15.dist-info/WHEEL
  creating '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir/pip-wheel-dcnsqimy/.tmp-nhefnt37/pyhmmer-0.10.15-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'pyhmmer/__init__.py'
  adding 'pyhmmer/_getid.pxi'
  adding 'pyhmmer/daemon.cpython-313-x86_64-linux-gnu.so'
  adding 'pyhmmer/daemon.pxd'
  adding 'pyhmmer/daemon.pyi'
  adding 'pyhmmer/daemon.pyx'
  adding 'pyhmmer/easel.cpython-313-x86_64-linux-gnu.so'
  adding 'pyhmmer/easel.pxd'
  adding 'pyhmmer/easel.pyi'
  adding 'pyhmmer/easel.pyx'
  adding 'pyhmmer/errors.cpython-313-x86_64-linux-gnu.so'
  adding 'pyhmmer/errors.pyi'
  adding 'pyhmmer/errors.pyx'
  adding 'pyhmmer/exceptions.pxi'
  adding 'pyhmmer/hmmer.py'
  adding 'pyhmmer/plan7.cpython-313-x86_64-linux-gnu.so'
  adding 'pyhmmer/plan7.pxd'
  adding 'pyhmmer/plan7.pyi'
  adding 'pyhmmer/plan7.pyx'
  adding 'pyhmmer/py.typed'
  adding 'pyhmmer/utils.py'
  adding 'pyhmmer/fileobj/__init__.pxd'
  adding 'pyhmmer/fileobj/bsd.h'
  adding 'pyhmmer/fileobj/bsd.pxd'
  adding 'pyhmmer/fileobj/linux.h'
  adding 'pyhmmer/fileobj/linux.pxd'
  adding 'pyhmmer/fileobj/util.h'
  adding 'pyhmmer/reexports/__init__.pxd'
  adding 'pyhmmer/reexports/esl_sqio_ascii.h'
  adding 'pyhmmer/reexports/esl_sqio_ascii.pxd'
  adding 'pyhmmer/reexports/p7_hmmfile.h'
  adding 'pyhmmer/reexports/p7_hmmfile.pxd'
  adding 'pyhmmer/reexports/p7_tophits.h'
  adding 'pyhmmer/reexports/p7_tophits.pxd'
  adding 'pyhmmer/tests/__init__.py'
  adding 'pyhmmer/tests/requirements.txt'
  adding 'pyhmmer/tests/test_doctest.py'
  adding 'pyhmmer/tests/test_errors.py'
  adding 'pyhmmer/tests/test_hmmer.py'
  adding 'pyhmmer/tests/utils.py'
  adding 'pyhmmer/tests/data/README.md'
  adding 'pyhmmer/tests/data/hmms/make.sh'
  adding 'pyhmmer/tests/data/hmms/bin/PF02826.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/RF00001.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/RREFam.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/Thioesterase.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/txt/KR.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/LuxC.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/PF02826.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/RF00001.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/RREFam.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/Thioesterase.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/bmyD.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/laccase.hmm'
  adding 'pyhmmer/tests/data/hmms/txt2/RREFam.hmm2'
  adding 'pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2'
  adding 'pyhmmer/tests/data/jackhmmer/KR-1.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-2.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-3.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-4.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-5.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-6.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-1.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-2.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-3.sto'
  adding 'pyhmmer/tests/data/msa/LuxC.faa'
  adding 'pyhmmer/tests/data/msa/LuxC.hmmalign.sto'
  adding 'pyhmmer/tests/data/msa/LuxC.sto'
  adding 'pyhmmer/tests/data/msa/laccase.clw'
  adding 'pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna'
  adding 'pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna'
  adding 'pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa'
  adding 'pyhmmer/tests/data/seqs/BGC0001090.gbk'
  adding 'pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna'
  adding 'pyhmmer/tests/data/seqs/LuxC.faa'
  adding 'pyhmmer/tests/data/seqs/PKSI.faa'
  adding 'pyhmmer/tests/data/seqs/bmyD.fna'
  adding 'pyhmmer/tests/data/tables/A0A089QRB9.domtbl'
  adding 'pyhmmer/tests/data/tables/PF02826.domtbl'
  adding 'pyhmmer/tests/data/tables/PF02826.tbl'
  adding 'pyhmmer/tests/data/tables/RREFam.domtbl'
  adding 'pyhmmer/tests/data/tables/RREFam.scan.tbl'
  adding 'pyhmmer/tests/data/tables/RREFam.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD1.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD2.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD3.tbl'
  adding 'pyhmmer/tests/test_easel/__init__.py'
  adding 'pyhmmer/tests/test_easel/test_alphabet.py'
  adding 'pyhmmer/tests/test_easel/test_bitfield.py'
  adding 'pyhmmer/tests/test_easel/test_block.py'
  adding 'pyhmmer/tests/test_easel/test_gencode.py'
  adding 'pyhmmer/tests/test_easel/test_keyhash.py'
  adding 'pyhmmer/tests/test_easel/test_matrix.py'
  adding 'pyhmmer/tests/test_easel/test_msa.py'
  adding 'pyhmmer/tests/test_easel/test_msafile.py'
  adding 'pyhmmer/tests/test_easel/test_randomness.py'
  adding 'pyhmmer/tests/test_easel/test_sequence.py'
  adding 'pyhmmer/tests/test_easel/test_sequencefile.py'
  adding 'pyhmmer/tests/test_easel/test_ssi.py'
  adding 'pyhmmer/tests/test_easel/test_vector.py'
  adding 'pyhmmer/tests/test_plan7/__init__.py'
  adding 'pyhmmer/tests/test_plan7/test_alignment.py'
  adding 'pyhmmer/tests/test_plan7/test_background.py'
  adding 'pyhmmer/tests/test_plan7/test_block.py'
  adding 'pyhmmer/tests/test_plan7/test_builder.py'
  adding 'pyhmmer/tests/test_plan7/test_hit.py'
  adding 'pyhmmer/tests/test_plan7/test_hmm.py'
  adding 'pyhmmer/tests/test_plan7/test_hmmfile.py'
  adding 'pyhmmer/tests/test_plan7/test_optimizedprofile.py'
  adding 'pyhmmer/tests/test_plan7/test_pipeline.py'
  adding 'pyhmmer/tests/test_plan7/test_profile.py'
  adding 'pyhmmer/tests/test_plan7/test_tophits.py'
  adding 'pyhmmer/tests/test_plan7/test_tracealigner.py'
  adding 'pyhmmer/tests/test_plan7/test_traces.py'
  adding 'pyhmmer-0.10.15.dist-info/COPYING'
  adding 'pyhmmer-0.10.15.dist-info/METADATA'
  adding 'pyhmmer-0.10.15.dist-info/WHEEL'
  adding 'pyhmmer-0.10.15.dist-info/top_level.txt'
  adding 'pyhmmer-0.10.15.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for pyhmmer (pyproject.toml): finished with status 'done'
  Created wheel for pyhmmer: filename=pyhmmer-0.10.15-cp313-cp313-linux_x86_64.whl size=9140901 sha256=5ed057f96416044a0efd71baa2fa3115d06f427e4e3757f9a6d5f4f3adea7466
  Stored in directory: /builddir/.cache/pip/wheels/13/53/a1/771ef92db7421bb44d91a188db19e5285a333c10aa0c866c9a
Successfully built pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bVhanC
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ '[' /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT
++ dirname /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ mkdir /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.15
++ ls /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir/pyhmmer-0.10.15-cp313-cp313-linux_x86_64.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=pyhmmer==0.10.15
+ '[' -z pyhmmer==0.10.15 ']'
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir pyhmmer==0.10.15
Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15/pyproject-wheeldir
Processing ./pyproject-wheeldir/pyhmmer-0.10.15-cp313-cp313-linux_x86_64.whl
Installing collected packages: pyhmmer
Successfully installed pyhmmer-0.10.15
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT --record /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/RECORD --output /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/RECORD
removed '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/REQUESTED
removed '/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.10.15.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-record --prefix /usr '*' +auto
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.10.15-1.fc42 --unique-debug-suffix -0.10.15-1.fc42.x86_64 --unique-debug-src-base python-pyhmmer-0.10.15-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-pyhmmer-0.10.15-build/pyhmmer-0.10.15
find-debuginfo: starting
Extracting debug info from 4 files
DWARF-compressing 4 files
sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/python-pyhmmer-0.10.15-1.fc42.x86_64
34698 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/hmmer.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_errors.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_doctest.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_traces.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_tracealigner.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_hmmer.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hmm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_background.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_alignment.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_profile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_tophits.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hit.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_pipeline.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_optimizedprofile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_builder.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_block.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hmmfile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_ssi.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_sequence.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_vector.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_randomness.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_matrix.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_sequencefile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_msafile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_msa.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_keyhash.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_bitfield.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_gencode.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_alphabet.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_block.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/hmmer.cpython-313.pyc: replacing with normalized version
Scanned 47 directories and 387 files,
               processed 37 inodes,
               37 modified (2 replaced + 35 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/python-pyhmmer-0.10.15-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RvnMxP
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.15
+ '[' '!' -f /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-modules ']'
+ PATH=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib/python3.13/site-packages
+ _PYTHONSITE=/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pyhmmer-0.10.15-build/python-pyhmmer-0.10.15-1.fc42.x86_64-pyproject-modules -t
Check import: pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-pyhmmer-0.10.15-1.fc42.x86_64
Provides: python-pyhmmer = 0.10.15-1.fc42 python3-pyhmmer = 0.10.15-1.fc42 python3-pyhmmer(x86-64) = 0.10.15-1.fc42 python3.13-pyhmmer = 0.10.15-1.fc42 python3.13dist(pyhmmer) = 0.10.15 python3dist(pyhmmer) = 0.10.15
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.13dist(psutil) >= 5.8 with python3.13dist(psutil) < 6) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Processing files: python-pyhmmer-debugsource-0.10.15-1.fc42.x86_64
Provides: python-pyhmmer-debugsource = 0.10.15-1.fc42 python-pyhmmer-debugsource(x86-64) = 0.10.15-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-pyhmmer-debuginfo-0.10.15-1.fc42.x86_64
Provides: debuginfo(build-id) = 21a94f52caa4f6ef60c6677df50ac2e7f44c5c7d debuginfo(build-id) = 34c80d5bd3c7b5074db7b50b5c8f6b23798b5a64 debuginfo(build-id) = 66593e07e06051589c782582ce35fd3017473c61 debuginfo(build-id) = f956cc449495753f70386b7cf4fb5baa9781e4a4 python-pyhmmer-debuginfo = 0.10.15-1.fc42 python3-pyhmmer-debuginfo = 0.10.15-1.fc42 python3-pyhmmer-debuginfo(x86-64) = 0.10.15-1.fc42 python3.13-pyhmmer-debuginfo = 0.10.15-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-pyhmmer-debugsource(x86-64) = 0.10.15-1.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pyhmmer-0.10.15-build/BUILDROOT
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.15-1.fc42.src.rpm
Wrote: /builddir/build/RPMS/python3-pyhmmer-debuginfo-0.10.15-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-pyhmmer-0.10.15-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python-pyhmmer-debugsource-0.10.15-1.fc42.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.RGHmYN
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ test -d /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ rm -rf /builddir/build/BUILD/python-pyhmmer-0.10.15-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild python-pyhmmer-0.10.15-1.fc42.src.rpm
Finish: build phase for python-pyhmmer-0.10.15-1.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1728412338.439602/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.10.15-1.fc42.src.rpm) Config(child) 3 minutes 12 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "python3-pyhmmer-debuginfo",
            "epoch": null,
            "version": "0.10.15",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-pyhmmer",
            "epoch": null,
            "version": "0.10.15",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python-pyhmmer",
            "epoch": null,
            "version": "0.10.15",
            "release": "1.fc42",
            "arch": "src"
        },
        {
            "name": "python-pyhmmer-debugsource",
            "epoch": null,
            "version": "0.10.15",
            "release": "1.fc42",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished