Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14b' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7938504-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 7410 Logging PID: 7411 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 7938504, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd4ef6d20551e87c0e10c6dc859f5dbdfeda2934a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '8.18.2-2', 'project_dirname': 'python3.13', 'project_name': 'python3.13', 'project_owner': '@python', 'repo_priority': 9, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.13/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': 9}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f41-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch'}], 'sandbox': '@python/python3.13--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '7938504-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/snakemake /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake'... Running: git checkout d4ef6d20551e87c0e10c6dc859f5dbdfeda2934a -- cmd: ['git', 'checkout', 'd4ef6d20551e87c0e10c6dc859f5dbdfeda2934a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake rc: 0 stdout: stderr: Note: switching to 'd4ef6d20551e87c0e10c6dc859f5dbdfeda2934a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d4ef6d2 automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-8.18.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-8.18.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.13/snakemake/snakemake-8.18.2.tar.gz/md5/3d16041877d242096026870afc84978e/snakemake-8.18.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8464k 100 8464k 0 0 31.4M 0 --:--:-- --:--:-- --:--:-- 31.4M INFO: Reading stdout from command: md5sum snakemake-8.18.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1724417054.954945 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1724417054.954945 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake/snakemake.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1724417054.954945/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.0-1.fc39.noarch python3-dnf-plugins-core-4.8.0-1.fc39.noarch yum-4.21.0-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 11.7 MiB/s | 21.7 MiB | 00m02s Copr repository 100% | 35.1 MiB/s | 10.1 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 45.2 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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4.19.92-6.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.19.92-6.fc42 copr_base 206.6 KiB rpm-libs x86_64 4.19.92-6.fc42 copr_base 721.8 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-6.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). 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-------------------------------------------------------------------------------- [154/154] Total 100% | 17.6 MiB/s | 52.8 MiB | 00m03s Running transaction Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/156] Verify package files 100% | 751.0 B/s | 154.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 [ 2/156] Prepare transaction 100% | 1.9 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-1. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64 [ 4/156] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 5/156] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 6/156] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 7/156] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 8/156] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 9/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 10/156] Installing setup-0:2.15.0-5.f 100% | 54.5 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 11/156] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.5 KiB | 00m00s [ 12/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 13/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 14/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 15/156] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 16/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 17/156] Installing ncurses-libs-0:6.5 100% | 159.8 MiB/s | 981.8 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 18/156] Installing glibc-0:2.40-3.fc4 100% | 126.0 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 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1.5 MiB | 00m00s [ 96/156] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [ 97/156] Installing tar-2:1.35-4.fc41. 100% | 227.6 MiB/s | 3.0 MiB | 00m00s [ 98/156] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [ 99/156] Installing shadow-utils-2:4.1 100% | 74.9 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-15.fc41.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-15.fc41.x86_64 [100/156] Installing libutempter-0:1.2. 100% | 29.2 MiB/s | 59.7 KiB | 00m00s [101/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [102/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [103/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [104/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [105/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [106/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [107/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [108/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [109/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [110/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [111/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [112/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [113/156] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [114/156] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [115/156] Installing coreutils-common-0 100% | 248.7 MiB/s | 11.2 MiB | 00m00s [116/156] Installing openssl-libs-1:3.2 100% | 313.0 MiB/s | 7.8 MiB | 00m00s [117/156] Installing coreutils-0:9.5-8. 100% | 129.9 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [118/156] Installing ca-certificates-0: 100% | 2.6 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [119/156] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s | 2.3 MiB | 00m00s [120/156] Installing libarchive-0:3.7.4 100% | 180.6 MiB/s | 924.6 KiB | 00m00s [121/156] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [122/156] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [123/156] Installing authselect-libs-0: 100% | 90.4 MiB/s | 833.2 KiB | 00m00s [124/156] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [125/156] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [126/156] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [127/156] Installing pam-0:1.6.1-5.fc41 100% | 78.2 MiB/s | 1.9 MiB | 00m00s [128/156] Installing libssh-0:0.10.6-8. 100% | 167.8 MiB/s | 515.4 KiB | 00m00s [129/156] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [130/156] Installing rpm-libs-0:4.19.92 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [131/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [132/156] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [133/156] Installing libcurl-0:8.9.1-2. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [134/156] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [135/156] Installing elfutils-debuginfo 100% | 21.8 MiB/s | 66.9 KiB | 00m00s [136/156] Installing binutils-0:2.43.1- 100% | 275.4 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [137/156] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s | 2.6 MiB | 00m00s [138/156] Installing gdb-minimal-0:15.1 100% | 324.8 MiB/s | 13.0 MiB | 00m00s [139/156] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [140/156] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [141/156] Installing curl-0:8.9.1-2.fc4 100% | 39.0 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.92-6.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.92-6.fc42.x86_64 [142/156] Installing rpm-0:4.19.92-6.fc 100% | 89.2 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 47.1 MiB/s | 192.9 KiB | 00m00s [151/156] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.7 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 89.9 MiB/s | 3.9 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-6.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-6.fc42.x86_64 [154/156] Installing authselect-0:1.5.0 100% | 51.4 MiB/s | 157.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1-3.fc41. 100% | 292.8 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.92-6.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.92-6.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 137 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-8.fc42.x86_64 coreutils-common-9.5-8.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240807-1.git5795660.fc41.noarch curl-8.9.1-2.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-6.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-2.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-6.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc41.x86_64 libgomp-14.2.1-1.fc41.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-6.fc42.x86_64 libnghttp2-1.62.1-2.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-6.fc42.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-1.fc41.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.2-6.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-5.fc41.x86_64 pam-libs-1.6.1-5.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.14-3.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.92-6.fc42.x86_64 rpm-build-4.19.92-6.fc42.x86_64 rpm-build-libs-4.19.92-6.fc42.x86_64 rpm-libs-4.19.92-6.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-6.fc42.x86_64 util-linux-core-2.40.2-6.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1724417054.954945/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1724417054.954945/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1p0_jwky/snakemake/snakemake.spec) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-8.18.2-2.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1724417054.954945/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.0-1.fc39.noarch python3-dnf-plugins-core-4.8.0-1.fc39.noarch yum-4.21.0-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for snakemake-8.18.2-2.fc42.src.rpm Start: build setup for snakemake-8.18.2-2.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.src.rpm Updating and loading repositories: fedora 100% | 900.0 KiB/s | 26.1 KiB | 00m00s Copr repository 100% | 44.0 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.7 KiB/s | 3.8 KiB | 00m00s Repositories loaded. 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0.2.3-6.fc41 copr_base 28.3 KiB python3-snakemake-storage-plugin-s3 noarch 0.2.12-1.fc41 copr_base 37.3 KiB singularity-ce x86_64 4.1.5-1.fc42 fedora 180.1 MiB strace x86_64 6.10-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.5 MiB stress x86_64 1.0.7-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 67.9 KiB vim-filesystem noarch 2:9.1.660-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 40.0 B Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 192.7 KiB abseil-cpp x86_64 20240116.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.5 MiB adobe-mappings-cmap noarch 20230622-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 14.4 MiB adobe-mappings-cmap-deprecated noarch 20230622-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 582.1 KiB adobe-mappings-pdf noarch 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[219/277] dbus-libs-1:1.14.10-4.fc41.x8 100% | 7.2 MiB/s | 155.1 KiB | 00m00s [220/277] perl-mro-0:1.29-511.fc41.x86_ 100% | 1.5 MiB/s | 29.9 KiB | 00m00s [221/277] perl-overloading-0:0.02-511.f 100% | 804.1 KiB/s | 12.9 KiB | 00m00s [222/277] perl-IO-0:1.55-511.fc41.x86_6 100% | 4.2 MiB/s | 77.6 KiB | 00m00s [223/277] perl-Pod-Perldoc-0:3.28.01-51 100% | 4.4 MiB/s | 80.5 KiB | 00m00s [224/277] perl-podlators-1:6.0.2-2.fc41 100% | 6.4 MiB/s | 124.8 KiB | 00m00s [225/277] perl-File-Temp-1:0.231.100-51 100% | 3.2 MiB/s | 59.1 KiB | 00m00s [226/277] perl-HTTP-Tiny-0:0.088-512.fc 100% | 3.2 MiB/s | 55.8 KiB | 00m00s [227/277] libicu-0:74.2-2.fc41.x86_64 100% | 31.5 MiB/s | 10.4 MiB | 00m00s [228/277] avahi-libs-0:0.8-30.fc42.x86_ 100% | 348.8 KiB/s | 66.6 KiB | 00m00s [229/277] perl-IPC-Open3-0:1.22-511.fc4 100% | 872.8 KiB/s | 21.8 KiB | 00m00s [230/277] perl-Symbol-0:1.09-511.fc41.n 100% | 884.8 KiB/s | 14.2 KiB | 00m00s [231/277] perl-Pod-Simple-1:3.45-511.fc 100% | 8.2 MiB/s | 209.6 KiB | 00m00s [232/277] perl-File-stat-0:1.14-511.fc4 100% | 1.0 MiB/s | 17.0 KiB | 00m00s [233/277] perl-SelectSaver-0:1.02-511.f 100% | 730.3 KiB/s | 11.7 KiB | 00m00s [234/277] perl-Socket-4:2.038-511.fc41. 100% | 2.7 MiB/s | 54.8 KiB | 00m00s [235/277] perl-Mozilla-CA-0:20240730-1. 100% | 712.9 KiB/s | 14.3 KiB | 00m00s [236/277] perl-IO-Socket-SSL-0:2.088-2. 100% | 6.6 MiB/s | 230.4 KiB | 00m00s [237/277] perl-Time-Local-2:1.350-511.f 100% | 2.0 MiB/s | 34.5 KiB | 00m00s [238/277] perl-Net-SSLeay-0:1.94-7.fc41 100% | 11.6 MiB/s | 357.6 KiB | 00m00s [239/277] perl-Class-Struct-0:0.68-511. 100% | 1.1 MiB/s | 22.0 KiB | 00m00s [240/277] perl-File-Path-0:2.18-511.fc4 100% | 1.6 MiB/s | 35.3 KiB | 00m00s [241/277] libXau-0:1.0.11-7.fc41.x86_64 100% | 1.7 MiB/s | 31.9 KiB | 00m00s [242/277] nss-softokn-freebl-0:3.103.0- 100% | 9.5 MiB/s | 301.8 KiB | 00m00s [243/277] libdav1d-0:1.4.3-2.fc41.x86_6 100% | 11.3 MiB/s | 625.6 KiB | 00m00s [244/277] rav1e-libs-0:0.7.1-3.fc41.x86 100% | 19.3 MiB/s | 1.0 MiB | 00m00s [245/277] libaom-0:3.9.0-3.fc41.x86_64 100% | 22.1 MiB/s | 1.8 MiB | 00m00s [246/277] libvmaf-0:3.0.0-2.fc41.x86_64 100% | 8.6 MiB/s | 193.7 KiB | 00m00s [247/277] google-noto-fonts-common-0:20 100% | 1.0 MiB/s | 18.0 KiB | 00m00s [248/277] libgcrypt-0:1.11.0-3.fc41.x86 100% | 15.3 MiB/s | 578.5 KiB | 00m00s [249/277] libksba-0:1.6.7-2.fc41.x86_64 100% | 6.0 MiB/s | 159.7 KiB | 00m00s [250/277] npth-0:1.7-2.fc41.x86_64 100% | 1.1 MiB/s | 25.2 KiB | 00m00s [251/277] tpm2-tss-0:4.1.3-3.fc41.x86_6 100% | 12.8 MiB/s | 407.1 KiB | 00m00s [252/277] svt-av1-libs-0:2.1.0-2.fc41.x 100% | 18.5 MiB/s | 2.0 MiB | 00m00s [253/277] json-c-0:0.17-4.fc41.x86_64 100% | 2.0 MiB/s | 44.0 KiB | 00m00s [254/277] device-mapper-libs-0:1.02.199 100% | 1.9 MiB/s | 177.6 KiB | 00m00s [255/277] device-mapper-0:1.02.199-4.fc 100% | 2.2 MiB/s | 137.3 KiB | 00m00s [256/277] openblas-openmp-0:0.3.26-5.fc 100% | 29.6 MiB/s | 5.1 MiB | 00m00s [257/277] systemd-rpm-macros-0:256.5-1. 100% | 208.2 KiB/s | 34.2 KiB | 00m00s [258/277] dbus-1:1.14.10-4.fc41.x86_64 100% | 439.5 KiB/s | 7.9 KiB | 00m00s [259/277] perl-Term-ANSIColor-0:5.01-51 100% | 2.6 MiB/s | 47.7 KiB | 00m00s [260/277] perl-Term-Cap-0:1.18-511.fc41 100% | 1.1 MiB/s | 22.1 KiB | 00m00s [261/277] ncurses-0:6.5-2.20240629.fc41 100% | 13.2 MiB/s | 419.1 KiB | 00m00s [262/277] perl-Pod-Escapes-1:1.07-511.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [263/277] perl-if-0:0.61.000-511.fc41.n 100% | 821.3 KiB/s | 14.0 KiB | 00m00s [264/277] perl-AutoLoader-0:5.74-511.fc 100% | 1.2 MiB/s | 21.2 KiB | 00m00s [265/277] perl-IO-Socket-IP-0:0.42-512. 100% | 1.9 MiB/s | 41.8 KiB | 00m00s [266/277] perl-URI-0:5.28-2.fc41.noarch 100% | 5.3 MiB/s | 120.1 KiB | 00m00s [267/277] openblas-0:0.3.26-5.fc41.x86_ 100% | 1.8 MiB/s | 38.7 KiB | 00m00s [268/277] dbus-broker-0:36-4.fc41.x86_6 100% | 8.4 MiB/s | 171.7 KiB | 00m00s [269/277] perl-Data-Dumper-0:2.189-512. 100% | 2.9 MiB/s | 56.3 KiB | 00m00s [270/277] perl-libnet-0:3.15-512.fc41.n 100% | 6.7 MiB/s | 123.0 KiB | 00m00s [271/277] perl-B-0:1.89-511.fc41.x86_64 100% | 8.2 MiB/s | 176.3 KiB | 00m00s [272/277] dbus-common-1:1.14.10-4.fc41. 100% | 862.4 KiB/s | 14.7 KiB | 00m00s [273/277] perl-Digest-MD5-0:2.59-5.fc41 100% | 1.4 MiB/s | 36.0 KiB | 00m00s [274/277] perl-FileHandle-0:2.05-511.fc 100% | 909.4 KiB/s | 15.5 KiB | 00m00s [275/277] perl-Digest-0:1.20-511.fc41.n 100% | 1.4 MiB/s | 24.9 KiB | 00m00s [276/277] systemd-pam-0:256.5-1.fc42.x8 100% | 621.6 KiB/s | 399.7 KiB | 00m01s [277/277] systemd-0:256.5-1.fc42.x86_64 100% | 7.3 MiB/s | 5.7 MiB | 00m01s -------------------------------------------------------------------------------- [277/277] Total 100% | 22.4 MiB/s | 201.2 MiB | 00m09s Running transaction [ 1/279] Verify package files 100% | 386.0 B/s | 277.0 B | 00m01s [ 2/279] Prepare transaction 100% | 1.2 KiB/s | 277.0 B | 00m00s [ 3/279] Installing libpng-2:1.6.40-4. 100% | 120.6 MiB/s | 247.1 KiB | 00m00s [ 4/279] Installing nspr-0:4.35.0-28.f 100% | 104.8 MiB/s | 322.1 KiB | 00m00s [ 5/279] Installing libgpg-error-0:1.5 100% | 145.7 MiB/s | 895.4 KiB | 00m00s [ 6/279] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 7/279] Installing urw-base35-fonts-c 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [ 8/279] Installing libjpeg-turbo-0:3. 100% | 253.5 MiB/s | 778.7 KiB | 00m00s [ 9/279] Installing nss-util-0:3.103.0 100% | 100.6 MiB/s | 206.1 KiB | 00m00s [ 10/279] Installing libseccomp-0:2.5.5 100% | 171.1 MiB/s | 175.2 KiB | 00m00s [ 11/279] Installing libwebp-0:1.4.0-4. 100% | 161.5 MiB/s | 826.8 KiB | 00m00s [ 12/279] Installing expat-0:2.6.2-2.fc 100% | 56.0 MiB/s | 286.8 KiB | 00m00s [ 13/279] Installing tzdata-0:2024a-9.f 100% | 27.7 MiB/s | 1.9 MiB | 00m00s [ 14/279] Installing libassuan-0:2.5.7- 100% | 80.9 MiB/s | 165.6 KiB | 00m00s [ 15/279] Installing libgfortran-0:14.2 100% | 276.7 MiB/s | 3.0 MiB | 00m00s [ 16/279] Installing python-rpm-macros- 100% | 0.0 B/s | 22.8 KiB | 00m00s [ 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fuse3-libs-0:3.16. 100% | 138.0 MiB/s | 282.6 KiB | 00m00s [ 27/279] Installing less-0:661-2.fc41. 100% | 99.8 MiB/s | 408.6 KiB | 00m00s [ 28/279] Installing fuse3-0:3.16.2-4.f 100% | 62.7 MiB/s | 128.4 KiB | 00m00s [ 29/279] Installing adobe-mappings-cma 100% | 190.5 MiB/s | 585.2 KiB | 00m00s [ 30/279] Installing libSM-0:1.2.4-4.fc 100% | 96.3 MiB/s | 98.7 KiB | 00m00s [ 31/279] Installing fuse-0:2.9.9-22.fc 100% | 6.0 MiB/s | 222.1 KiB | 00m00s >>> Running pre-install scriptlet: tpm2-tss-0:4.1.3-3.fc41.x86_64 >>> Stop pre-install scriptlet: tpm2-tss-0:4.1.3-3.fc41.x86_64 [ 32/279] Installing tpm2-tss-0:4.1.3-3 100% | 158.1 MiB/s | 1.6 MiB | 00m00s [ 33/279] Installing pyproject-rpm-macr 100% | 105.1 MiB/s | 107.7 KiB | 00m00s [ 34/279] Installing graphviz-libs-0:12 100% | 201.3 MiB/s | 1.2 MiB | 00m00s [ 35/279] Installing nss-softokn-freebl 100% | 191.9 MiB/s | 785.8 KiB | 00m00s [ 36/279] Installing nss-softokn-0:3.10 100% | 268.4 MiB/s | 1.9 MiB | 00m00s [ 37/279] Installing nss-sysinit-0:3.10 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [ 38/279] Installing nss-0:3.103.0-1.fc 100% | 85.5 MiB/s | 1.9 MiB | 00m00s >>> Running post-install scriptlet: nss-0:3.103.0-1.fc41.x86_64 >>> Stop post-install scriptlet: nss-0:3.103.0-1.fc41.x86_64 [ 39/279] Installing urw-base35-bookman 100% | 56.9 MiB/s | 1.4 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-bookman-fonts-0:20200910-23.fc41. >>> Stop post-install scriptlet: urw-base35-bookman-fonts-0:20200910-23.fc41.noa [ 40/279] Installing urw-base35-c059-fo 100% | 77.5 MiB/s | 1.4 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41.noa >>> Stop post-install scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41.noarch [ 41/279] Installing urw-base35-d050000 100% | 6.4 MiB/s | 85.4 KiB | 00m00s >>> Running post-install scriptlet: urw-base35-d050000l-fonts-0:20200910-23.fc41 >>> Stop post-install scriptlet: urw-base35-d050000l-fonts-0:20200910-23.fc41.no [ 42/279] Installing 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dbus-common-1:1.14 100% | 322.6 KiB/s | 13.6 KiB | 00m00s >>> Running post-install scriptlet: dbus-common-1:1.14.10-4.fc41.noarch >>> Stop post-install scriptlet: dbus-common-1:1.14.10-4.fc41.noarch >>> Running pre-install scriptlet: dbus-broker-0:36-4.fc41.x86_64 >>> Stop pre-install scriptlet: dbus-broker-0:36-4.fc41.x86_64 [ 54/279] Installing dbus-broker-0:36-4 100% | 28.9 MiB/s | 385.3 KiB | 00m00s >>> Running post-install scriptlet: dbus-broker-0:36-4.fc41.x86_64 >>> Stop post-install scriptlet: dbus-broker-0:36-4.fc41.x86_64 [ 55/279] Installing dbus-1:1.14.10-4.f 100% | 0.0 B/s | 124.0 B | 00m00s [ 56/279] Installing cryptsetup-libs-0: 100% | 213.1 MiB/s | 2.3 MiB | 00m00s [ 57/279] Installing device-mapper-libs 100% | 135.3 MiB/s | 415.8 KiB | 00m00s [ 58/279] Installing device-mapper-0:1. 100% | 114.5 MiB/s | 351.8 KiB | 00m00s [ 59/279] Installing systemd-pam-0:256. 100% | 154.4 MiB/s | 1.1 MiB | 00m00s [ 60/279] Installing systemd-0:256.5-1. 100% | 60.4 MiB/s | 17.1 MiB | 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Installing systemd-rpm-macros 100% | 0.0 B/s | 9.9 KiB | 00m00s [278/279] Installing stress-0:1.0.7-5.f 100% | 68.1 MiB/s | 69.7 KiB | 00m00s [279/279] Installing strace-0:6.10-1.fc 100% | 2.8 MiB/s | 2.5 MiB | 00m01s >>> Running post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-23.f >>> Stop post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-23.fc41 >>> Running post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41 >>> Stop post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41.no >>> Running post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-23. >>> Stop post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-23.fc4 >>> Running post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-23.fc >>> Stop post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-23.fc41. >>> Running post-transaction scriptlet: urw-base35-nimbus-mono-ps-fonts-0:202009 >>> Stop post-transaction scriptlet: 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>>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Running trigger-install scriptlet: 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Finish: build setup for snakemake-8.18.2-2.fc42.src.rpm Start: rpmbuild snakemake-8.18.2-2.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.9RyIwH + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + test -d /builddir/build/BUILD/snakemake-8.18.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/snakemake-8.18.2-build + /usr/bin/rm -rf /builddir/build/BUILD/snakemake-8.18.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0BEIep + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd /builddir/build/BUILD/snakemake-8.18.2-build + rm -rf snakemake-8.18.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-8.18.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-8.18.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') recursedown('./.github/workflows') recursedown('./.github/workflows/scripts') recursedown('./apidocs') recursedown('./apidocs/_templates') recursedown('./apidocs/api_reference') recursedown('./apidocs/api_reference/internal') recursedown('./docs') recursedown('./docs/_static') recursedown('./docs/executing') recursedown('./docs/getting_started') recursedown('./docs/getting_started/img') recursedown('./docs/project_info') recursedown('./docs/project_info/img') recursedown('./docs/snakefiles') recursedown('./docs/snakefiles/images') recursedown('./docs/tutorial') recursedown('./docs/tutorial/workflow') recursedown('./examples') recursedown('./examples/c') recursedown('./examples/c/include') recursedown('./examples/c/src') 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./tests/test_script_py/scripts/test.py: no change ./tests/test_script_py/scripts/test_explicit_import.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change 'misc/nano/README.md' -> 'README-nano.md' 'misc/vim/README.md' -> 'README-vim.md' Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.N3GL7D recursedown('./tests/test_scatter_gather_multiple_processes') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b') recursedown('./tests/test_scheduler_sequential_all_cores') recursedown('./tests/test_scheduler_sequential_all_cores/expected-results') recursedown('./tests/test_script') recursedown('./tests/test_script/envs') recursedown('./tests/test_script/expected-results') recursedown('./tests/test_script/scripts') recursedown('./tests/test_script_pre_py39') recursedown('./tests/test_script_pre_py39/expected-results') recursedown('./tests/test_script_py') recursedown('./tests/test_script_py/expected-results') recursedown('./tests/test_script_py/scripts') recursedown('./tests/test_service_jobs') recursedown('./tests/test_service_jobs/expected-results') recursedown('./tests/test_set_resources') recursedown('./tests/test_set_resources/expected-results') recursedown('./tests/test_set_resources_complex') recursedown('./tests/test_set_resources_complex/expected-results') recursedown('./tests/test_set_resources_complex/test-profile') recursedown('./tests/test_set_threads') recursedown('./tests/test_set_threads/expected-results') recursedown('./tests/test_shadow') recursedown('./tests/test_shadow/expected-results') recursedown('./tests/test_shadow_copy') recursedown('./tests/test_shadow_copy/expected-results') recursedown('./tests/test_shadow_prefix') recursedown('./tests/test_shadow_prefix/expected-results') recursedown('./tests/test_shadowed_log') recursedown('./tests/test_shadowed_log/expected-results') recursedown('./tests/test_shell') recursedown('./tests/test_shell/expected-results') recursedown('./tests/test_shell_exec') recursedown('./tests/test_shell_exec/expected-results') recursedown('./tests/test_singularity') recursedown('./tests/test_singularity/expected-results') recursedown('./tests/test_singularity_conda') recursedown('./tests/test_singularity_conda/expected-results') recursedown('./tests/test_singularity_global') recursedown('./tests/test_singularity_global/expected-results') recursedown('./tests/test_singularity_module') recursedown('./tests/test_singularity_module/expected-results') recursedown('./tests/test_singularity_none') recursedown('./tests/test_singularity_none/expected-results') recursedown('./tests/test_slurm_mpi') recursedown('./tests/test_slurm_mpi/envs') recursedown('./tests/test_slurm_mpi/expected-results') recursedown('./tests/test_solver') recursedown('./tests/test_solver/expected-results') recursedown('./tests/test_source_path') recursedown('./tests/test_source_path/expected-results') recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_storage') recursedown('./tests/test_storage/expected-results') recursedown('./tests/test_storage_cleanup_local') recursedown('./tests/test_storage_cleanup_local/expected-results') recursedown('./tests/test_storage_cleanup_local/expected-results/fs-storage') recursedown('./tests/test_storage_localrule') recursedown('./tests/test_storage_localrule/expected-results') recursedown('./tests/test_storage_localrule/expected-results/fs-storage') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_update_flag') recursedown('./tests/test_update_flag/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd snakemake-8.18.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 966.7 KiB/s | 26.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.3 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 24.4 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-2.fc41.x86_64" is already installed. Package "graphviz-12.1.0-1.fc41.x86_64" is already installed. Package "help2man-1.49.3-6.fc41.noarch" is already installed. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package "python-unversioned-command-3.13.0~rc1-2.fc41.noarch" is already installed. Package "python3-devel-3.13.0~rc1-2.fc41.x86_64" is already installed. Package "python3-boto3-1.35.3-1.fc42.noarch" is already installed. Package "python3-flask-1:3.0.3-6.fc41.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-6.fc41.noarch" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pytest-8.3.1-2.fc41.noarch" is already installed. Package "python3-pytest-mock-3.14.0-2.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-3.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc42.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-6.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc41.noarch" is already installed. Package "strace-6.10-1.fc41.x86_64" is already installed. Package "stress-1.0.7-5.fc41.x86_64" is already installed. Package "vim-filesystem-2:9.1.660-2.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.2-1.fc41 copr_base 11.4 MiB python3-wheel noarch 1:0.43.0-4.fc41 copr_base 516.1 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 3 MiB. After this operation 12 MiB will be used (install 12 MiB, remove 0 B). [1/2] python3-wheel-1:0.43.0-4.fc41.noa 100% | 1.3 MiB/s | 151.5 KiB | 00m00s [2/2] python3-pip-0:24.2-1.fc41.noarch 100% | 14.7 MiB/s | 2.5 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 15.5 MiB/s | 2.7 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 166.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 42.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.43.0 100% | 52.3 MiB/s | 535.1 KiB | 00m00s [4/4] Installing python3-pip-0:24.2-1.f 100% | 67.4 MiB/s | 11.7 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Stop trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 Warning: skipped PGP checks for 2 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FCBugv + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd snakemake-8.18.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: appdirs Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: immutables Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: docutils Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.1) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp <2.9,>=2.3.1 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pyyaml Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.32.3) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open <8.0,>=4.0 Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.2.0) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.3) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort <2.0,>=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: dpath <3.0.0,>=2.1.6 Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: conda-inject <2.0,>=1.3.1 Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slack-sdk ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pygments ; extra == 'reports' + cat /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 932.1 KiB/s | 26.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 75.1 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 26.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-2.fc41.x86_64" is already installed. Package "graphviz-12.1.0-1.fc41.x86_64" is already installed. Package "help2man-1.49.3-6.fc41.noarch" is already installed. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package "python-unversioned-command-3.13.0~rc1-2.fc41.noarch" is already installed. Package "python3-devel-3.13.0~rc1-2.fc41.x86_64" is already installed. Package "python3-boto3-1.35.3-1.fc42.noarch" is already installed. Package "python3-configargparse-1.7-5.fc41.noarch" is already installed. Package "python3-flask-1:3.0.3-6.fc41.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-6.fc41.noarch" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Package "python3-pytest-8.3.1-2.fc41.noarch" is already installed. Package "python3-pytest-mock-3.14.0-2.fc41.noarch" is already installed. Package "python3-reretry-0.11.8-11.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-3.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc42.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-6.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc41.noarch" is already installed. Package "python3-throttler-1.2.2-12.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Package "python3-wrapt-1.16.0-6.fc41.x86_64" is already installed. Package "strace-6.10-1.fc41.x86_64" is already installed. Package "stress-1.0.7-5.fc41.x86_64" is already installed. Package "vim-filesystem-2:9.1.660-2.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-GitPython noarch 3.1.40-6.fc41 copr_base 1.7 MiB python3-appdirs noarch 1.4.4-24.fc41 copr_base 68.7 KiB python3-conda-inject noarch 1.3.2-3.fc41 copr_base 23.6 KiB python3-connection_pool noarch 0.0.3-13.fc41 copr_base 21.2 KiB python3-datrie x86_64 0.8.2-27.fc41 copr_base 444.7 KiB python3-docutils noarch 0.20.1-7.fc41 copr_base 4.8 MiB python3-dpath noarch 2.2.0-2.fc41 copr_base 93.3 KiB python3-humanfriendly noarch 10.0-13.fc41 copr_base 544.8 KiB python3-immutables x86_64 0.20-7.fc41 copr_base 185.9 KiB python3-jsonschema noarch 4.19.1-6.fc41 copr_base 850.0 KiB python3-nbformat noarch 5.9.2-5.fc41 copr_base 541.7 KiB python3-psutil x86_64 5.9.8-4.fc41 copr_base 1.4 MiB python3-pulp noarch 2.8.0-6.fc41 copr_base 1.0 MiB python3-pygments noarch 2.17.2-7.fc41 copr_base 10.4 MiB python3-pyyaml x86_64 6.0.1-18.fc41 copr_base 791.1 KiB python3-slackclient noarch 3.31.0-2.fc41 copr_base 2.9 MiB python3-smart_open noarch 7.0.4-3.fc41 copr_base 490.8 KiB python3-snakemake-interface-report-plugins noarch 1.0.0-5.fc41 copr_base 31.1 KiB python3-stopit noarch 1.1.2-12.fc41 copr_base 65.2 KiB python3-tabulate noarch 0.9.0-10.fc41 copr_base 342.0 KiB python3-toposort noarch 1.10-12.fc41 copr_base 28.5 KiB python3-yte noarch 1.5.4-6.fc41 copr_base 61.0 KiB Installing dependencies: git-core x86_64 2.46.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 22.1 MiB libcbor x86_64 0.11.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 73.9 KiB libedit x86_64 3.1-53.20240808cvs.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 244.1 KiB libfido2 x86_64 1.15.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 238.2 KiB libyaml x86_64 0.2.5-15.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.4 KiB openssh x86_64 9.8p1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB openssh-clients x86_64 9.8p1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.6 MiB python3-attrs noarch 24.2.0-1.fc41 copr_base 396.1 KiB python3-boto noarch 2.49.0-23.fc41 copr_base 9.6 MiB python3-fastjsonschema noarch 2.19.1-4.fc41 copr_base 188.8 KiB python3-gitdb noarch 4.0.10-7.fc41 copr_base 503.9 KiB python3-jsonschema-specifications noarch 2023.11.2-6.fc41 copr_base 45.8 KiB python3-jupyter-core noarch 5.7.2-3.fc41 copr_base 198.7 KiB python3-plac noarch 1.4.3-4.fc41 copr_base 230.2 KiB python3-referencing noarch 0.35.1-2.fc41 copr_base 326.0 KiB python3-rpds-py x86_64 0.19.1-1.fc41 copr_base 684.2 KiB python3-smmap noarch 5.0.0-10.fc41 copr_base 200.0 KiB python3-traitlets noarch 5.14.3-3.fc41 copr_base 966.9 KiB python3-zombie-imp noarch 0.0.2-7.fc41 copr_base 58.4 KiB Transaction Summary: Installing: 41 packages Total size of inbound packages is 15 MiB. Need to download 15 MiB. After this operation 67 MiB will be used (install 67 MiB, remove 0 B). [ 1/41] python3-conda-inject-0:1.3.2-3. 100% | 214.9 KiB/s | 19.3 KiB | 00m00s [ 2/41] python3-smart_open-0:7.0.4-3.fc 100% | 1.2 MiB/s | 118.9 KiB | 00m00s [ 3/41] python3-snakemake-interface-rep 100% | 382.4 KiB/s | 21.8 KiB | 00m00s [ 4/41] python3-pulp-0:2.8.0-6.fc41.noa 100% | 930.5 KiB/s | 233.5 KiB | 00m00s [ 5/41] python3-toposort-0:1.10-12.fc41 100% | 1.0 MiB/s | 20.8 KiB | 00m00s [ 6/41] python3-yte-0:1.5.4-6.fc41.noar 100% | 1.4 MiB/s | 31.9 KiB | 00m00s [ 7/41] python3-appdirs-0:1.4.4-24.fc41 100% | 1.3 MiB/s | 24.0 KiB | 00m00s [ 8/41] python3-connection_pool-0:0.0.3 100% | 1.1 MiB/s | 17.6 KiB | 00m00s [ 9/41] python3-dpath-0:2.2.0-2.fc41.no 100% | 121.0 KiB/s | 38.5 KiB | 00m00s [10/41] python3-datrie-0:0.8.2-27.fc41. 100% | 4.3 MiB/s | 158.6 KiB | 00m00s [11/41] python3-humanfriendly-0:10.0-13 100% | 1.8 MiB/s | 138.2 KiB | 00m00s [12/41] python3-docutils-0:0.20.1-7.fc4 100% | 9.2 MiB/s | 1.0 MiB | 00m00s [13/41] python3-GitPython-0:3.1.40-6.fc 100% | 4.4 MiB/s | 370.9 KiB | 00m00s [14/41] python3-immutables-0:0.20-7.fc4 100% | 2.9 MiB/s | 60.0 KiB | 00m00s [15/41] python3-jsonschema-0:4.19.1-6.f 100% | 4.3 MiB/s | 188.9 KiB | 00m00s [16/41] python3-nbformat-0:5.9.2-5.fc41 100% | 2.3 MiB/s | 123.5 KiB | 00m00s [17/41] python3-psutil-0:5.9.8-4.fc41.x 100% | 7.0 MiB/s | 265.8 KiB | 00m00s [18/41] python3-pygments-0:2.17.2-7.fc4 100% | 25.0 MiB/s | 2.3 MiB | 00m00s [19/41] python3-pyyaml-0:6.0.1-18.fc41. 100% | 2.5 MiB/s | 221.1 KiB | 00m00s [20/41] python3-slackclient-0:3.31.0-2. 100% | 5.9 MiB/s | 503.1 KiB | 00m00s [21/41] python3-stopit-0:1.1.2-12.fc41. 100% | 2.5 MiB/s | 26.1 KiB | 00m00s [22/41] python3-tabulate-0:0.9.0-10.fc4 100% | 6.4 MiB/s | 72.4 KiB | 00m00s [23/41] python3-plac-0:1.4.3-4.fc41.noa 100% | 5.1 MiB/s | 63.2 KiB | 00m00s [24/41] python3-fastjsonschema-0:2.19.1 100% | 3.4 MiB/s | 58.6 KiB | 00m00s [25/41] python3-boto-0:2.49.0-23.fc41.n 100% | 31.7 MiB/s | 1.7 MiB | 00m00s [26/41] python3-jupyter-core-0:5.7.2-3. 100% | 2.1 MiB/s | 72.0 KiB | 00m00s [27/41] python3-traitlets-0:5.14.3-3.fc 100% | 15.1 MiB/s | 201.4 KiB | 00m00s [28/41] python3-attrs-0:24.2.0-1.fc41.n 100% | 8.3 MiB/s | 118.6 KiB | 00m00s [29/41] libyaml-0:0.2.5-15.fc41.x86_64 100% | 836.6 KiB/s | 59.4 KiB | 00m00s [30/41] python3-jsonschema-specificatio 100% | 2.4 MiB/s | 21.8 KiB | 00m00s [31/41] python3-referencing-0:0.35.1-2. 100% | 7.6 MiB/s | 77.6 KiB | 00m00s [32/41] python3-rpds-py-0:0.19.1-1.fc41 100% | 21.7 MiB/s | 288.4 KiB | 00m00s [33/41] python3-zombie-imp-0:0.0.2-7.fc 100% | 2.9 MiB/s | 30.0 KiB | 00m00s [34/41] python3-gitdb-0:4.0.10-7.fc41.n 100% | 9.8 MiB/s | 130.8 KiB | 00m00s [35/41] python3-smmap-0:5.0.0-10.fc41.n 100% | 5.0 MiB/s | 56.7 KiB | 00m00s [36/41] git-core-0:2.46.0-1.fc41.x86_64 100% | 39.2 MiB/s | 4.7 MiB | 00m00s [37/41] openssh-clients-0:9.8p1-3.fc41. 100% | 6.3 MiB/s | 737.6 KiB | 00m00s [38/41] libfido2-0:1.15.0-2.fc41.x86_64 100% | 5.0 MiB/s | 98.1 KiB | 00m00s [39/41] openssh-0:9.8p1-3.fc41.x86_64 100% | 10.5 MiB/s | 410.3 KiB | 00m00s [40/41] libcbor-0:0.11.0-2.fc41.x86_64 100% | 1.7 MiB/s | 33.1 KiB | 00m00s [41/41] libedit-0:3.1-53.20240808cvs.fc 100% | 648.0 KiB/s | 105.6 KiB | 00m00s -------------------------------------------------------------------------------- [41/41] Total 100% | 17.8 MiB/s | 14.8 MiB | 00m01s Running transaction [ 1/43] Verify package files 100% | 694.0 B/s | 41.0 B | 00m00s [ 2/43] Prepare transaction 100% | 431.0 B/s | 41.0 B | 00m00s [ 3/43] Installing python3-rpds-py-0:0. 100% | 134.4 MiB/s | 688.1 KiB | 00m00s [ 4/43] Installing python3-attrs-0:24.2 100% | 80.2 MiB/s | 410.7 KiB | 00m00s [ 5/43] Installing python3-referencing- 100% | 81.9 MiB/s | 335.6 KiB | 00m00s [ 6/43] Installing python3-traitlets-0: 100% | 120.1 MiB/s | 984.0 KiB | 00m00s [ 7/43] Installing python3-jupyter-core 100% | 50.7 MiB/s | 207.5 KiB | 00m00s [ 8/43] Installing python3-jsonschema-s 100% | 13.5 MiB/s | 55.1 KiB | 00m00s [ 9/43] Installing python3-jsonschema-0 100% | 106.2 MiB/s | 870.3 KiB | 00m00s [10/43] Installing libcbor-0:0.11.0-2.f 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [11/43] Installing libfido2-0:1.15.0-2. 100% | 117.1 MiB/s | 239.7 KiB | 00m00s [12/43] Installing openssh-0:9.8p1-3.fc 100% | 254.1 MiB/s | 1.8 MiB | 00m00s [13/43] Installing libedit-0:3.1-53.202 100% | 120.0 MiB/s | 245.8 KiB | 00m00s [14/43] Installing openssh-clients-0:9. 100% | 68.4 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.8p1-3.fc41.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.8p1-3.fc41.x86_64 [15/43] Installing git-core-0:2.46.0-1. 100% | 321.2 MiB/s | 22.2 MiB | 00m00s [16/43] Installing python3-smmap-0:5.0. 100% | 50.7 MiB/s | 207.7 KiB | 00m00s [17/43] Installing python3-gitdb-0:4.0. 100% | 84.7 MiB/s | 520.4 KiB | 00m00s [18/43] Installing python3-zombie-imp-0 100% | 15.2 MiB/s | 62.4 KiB | 00m00s [19/43] Installing python3-boto-0:2.49. 100% | 128.2 MiB/s | 9.9 MiB | 00m00s [20/43] Installing python3-fastjsonsche 100% | 64.1 MiB/s | 196.8 KiB | 00m00s [21/43] Installing libyaml-0:0.2.5-15.f 100% | 132.6 MiB/s | 135.8 KiB | 00m00s [22/43] Installing python3-pyyaml-0:6.0 100% | 112.3 MiB/s | 804.9 KiB | 00m00s [23/43] Installing python3-plac-0:1.4.3 100% | 114.1 MiB/s | 233.7 KiB | 00m00s [24/43] Installing python3-dpath-0:2.2. 100% | 32.2 MiB/s | 99.0 KiB | 00m00s [25/43] Installing python3-yte-0:1.5.4- 100% | 21.6 MiB/s | 66.3 KiB | 00m00s [26/43] Installing python3-conda-inject 100% | 12.8 MiB/s | 26.3 KiB | 00m00s [27/43] Installing python3-nbformat-0:5 100% | 61.8 MiB/s | 569.9 KiB | 00m00s [28/43] Installing python3-smart_open-0 100% | 98.3 MiB/s | 503.1 KiB | 00m00s [29/43] Installing python3-GitPython-0: 100% | 144.2 MiB/s | 1.7 MiB | 00m00s [30/43] Installing python3-tabulate-0:0 100% | 112.5 MiB/s | 345.5 KiB | 00m00s [31/43] Installing python3-stopit-0:1.1 100% | 22.6 MiB/s | 69.5 KiB | 00m00s [32/43] Installing python3-slackclient- 100% | 83.9 MiB/s | 3.0 MiB | 00m00s [33/43] Installing python3-pygments-0:2 100% | 167.7 MiB/s | 10.6 MiB | 00m00s [34/43] Installing python3-psutil-0:5.9 100% | 206.8 MiB/s | 1.4 MiB | 00m00s [35/43] Installing python3-immutables-0 100% | 62.4 MiB/s | 191.8 KiB | 00m00s [36/43] Installing python3-humanfriendl 100% | 90.5 MiB/s | 556.3 KiB | 00m00s [37/43] Installing python3-docutils-0:0 100% | 132.7 MiB/s | 4.9 MiB | 00m00s [38/43] Installing python3-datrie-0:0.8 100% | 218.2 MiB/s | 446.8 KiB | 00m00s [39/43] Installing python3-connection_p 100% | 11.6 MiB/s | 23.8 KiB | 00m00s [40/43] Installing python3-appdirs-0:1. 100% | 34.6 MiB/s | 70.9 KiB | 00m00s [41/43] Installing python3-toposort-0:1 100% | 15.1 MiB/s | 30.9 KiB | 00m00s [42/43] Installing python3-snakemake-in 100% | 12.5 MiB/s | 38.3 KiB | 00m00s [43/43] Installing python3-pulp-0:2.8.0 100% | 8.5 MiB/s | 1.1 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Stop trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc42.x86_64 Warning: skipped PGP checks for 41 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.mPf17X + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd snakemake-8.18.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.1) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.32.3) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.2.0) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.3) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.2.0) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.31.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 932.1 KiB/s | 26.1 KiB | 00m00s Copr repository 100% | 24.4 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 61.8 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-2.fc41.x86_64" is already installed. Package "graphviz-12.1.0-1.fc41.x86_64" is already installed. Package "help2man-1.49.3-6.fc41.noarch" is already installed. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package "python-unversioned-command-3.13.0~rc1-2.fc41.noarch" is already installed. Package "python3-devel-3.13.0~rc1-2.fc41.x86_64" is already installed. Package "python3-appdirs-1.4.4-24.fc41.noarch" is already installed. Package "python3-boto3-1.35.3-1.fc42.noarch" is already installed. Package "python3-configargparse-1.7-5.fc41.noarch" is already installed. Package "python3-connection_pool-0.0.3-13.fc41.noarch" is already installed. Package "python3-datrie-0.8.2-27.fc41.x86_64" is already installed. Package "python3-docutils-0.20.1-7.fc41.noarch" is already installed. Package "python3-flask-1:3.0.3-6.fc41.noarch" is already installed. Package "python3-GitPython-3.1.40-6.fc41.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-6.fc41.noarch" is already installed. Package "python3-humanfriendly-10.0-13.fc41.noarch" is already installed. Package "python3-immutables-0.20-7.fc41.x86_64" is already installed. Package "python3-jsonschema-4.19.1-6.fc41.noarch" is already installed. Package "python3-nbformat-5.9.2-5.fc41.noarch" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Package "python3-psutil-5.9.8-4.fc41.x86_64" is already installed. Package "python3-pygments-2.17.2-7.fc41.noarch" is already installed. Package "python3-pytest-8.3.1-2.fc41.noarch" is already installed. Package "python3-pytest-mock-3.14.0-2.fc41.noarch" is already installed. Package "python3-pyyaml-6.0.1-18.fc41.x86_64" is already installed. Package "python3-reretry-0.11.8-11.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package "python3-slackclient-3.31.0-2.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-3.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc42.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-6.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc41.noarch" is already installed. Package "python3-stopit-1.1.2-12.fc41.noarch" is already installed. Package "python3-tabulate-0.9.0-10.fc41.noarch" is already installed. Package "python3-throttler-1.2.2-12.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Package "python3-wrapt-1.16.0-6.fc41.x86_64" is already installed. Package "strace-6.10-1.fc41.x86_64" is already installed. Package "stress-1.0.7-5.fc41.x86_64" is already installed. Package "vim-filesystem-2:9.1.660-2.fc41.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724371200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Nkvt9o + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd snakemake-8.18.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.1) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.32.3) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.2.0) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.3) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.2.0) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.31.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bdB0D1 + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info writing /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-_trz4pn_/snakemake-8.18.2.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/api.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/cli.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/ioflags.py -> build/lib/snakemake copying snakemake/ioutils.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/spawn_jobs.py -> build/lib/snakemake copying snakemake/storage.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/storage.py -> build/lib/snakemake/caching creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common copying snakemake/common/argparse.py -> build/lib/snakemake/common copying snakemake/common/configfile.py -> build/lib/snakemake/common copying snakemake/common/git.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/typing.py -> build/lib/snakemake/common copying snakemake/common/workdir_handler.py -> build/lib/snakemake/common creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying snakemake/executors/local.py -> build/lib/snakemake/executors copying snakemake/executors/touch.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report copying snakemake/report/common.py -> build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report creating build/lib/snakemake/script copying snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/settings copying snakemake/settings/__init__.py -> build/lib/snakemake/settings copying snakemake/settings/enums.py -> build/lib/snakemake/settings copying snakemake/settings/types.py -> build/lib/snakemake/settings creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/common/tests copying snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups creating build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/__init__.py -> build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/common.py -> build/lib/snakemake/report/html_reporter creating build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/__init__.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/categories.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/common.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/configfiles.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/packages.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/results.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rulegraph.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rules.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/runtimes.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/timeline.py -> build/lib/snakemake/report/html_reporter/data creating build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/__init__.py -> build/lib/snakemake/report/html_reporter/template creating build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/__init__.py -> build/lib/snakemake/report/html_reporter/template/components creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying snakemake/report/html_reporter/template/style.css -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/index.html.jinja2 -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/logo.svg -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/components/abstract_menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/abstract_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/app.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/category.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/common.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/content.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/icon.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_heading.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_item.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/navbar.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/report_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_view_button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_graph.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/search_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/stats.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/subcategory.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '8.18.2' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/api.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cli.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioflags.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioutils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/spawn_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/storage.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/storage.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/argparse.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/configfile.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/git.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/typing.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/common/tests copying build/lib/snakemake/common/tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/testcases/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/local.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/touch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote creating build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/configfiles.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/script copying build/lib/snakemake/script/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/script creating build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/enums.py -> build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/types.py -> build/bdist.linux-x86_64/wheel/snakemake/settings creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-8.18.2-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-8.18.2.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir/pip-wheel-igiiq4om/.tmp-8pw2rwyh/snakemake-8.18.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/api.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cli.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/ioflags.py' adding 'snakemake/ioutils.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/spawn_jobs.py' adding 'snakemake/storage.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/storage.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/argparse.py' adding 'snakemake/common/configfile.py' adding 'snakemake/common/git.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/common/typing.py' adding 'snakemake/common/workdir_handler.py' adding 'snakemake/common/tests/__init__.py' adding 'snakemake/common/tests/testcases/__init__.py' adding 'snakemake/common/tests/testcases/groups/Snakefile' adding 'snakemake/common/tests/testcases/groups/__init__.py' adding 'snakemake/common/tests/testcases/simple/Snakefile' adding 'snakemake/common/tests/testcases/simple/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/dryrun.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/local.py' adding 'snakemake/executors/touch.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/common.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/html_reporter/__init__.py' adding 'snakemake/report/html_reporter/common.py' adding 'snakemake/report/html_reporter/data/__init__.py' adding 'snakemake/report/html_reporter/data/categories.py' adding 'snakemake/report/html_reporter/data/common.py' adding 'snakemake/report/html_reporter/data/configfiles.py' adding 'snakemake/report/html_reporter/data/packages.py' adding 'snakemake/report/html_reporter/data/results.py' adding 'snakemake/report/html_reporter/data/rulegraph.py' adding 'snakemake/report/html_reporter/data/rules.py' adding 'snakemake/report/html_reporter/data/runtimes.py' adding 'snakemake/report/html_reporter/data/timeline.py' adding 'snakemake/report/html_reporter/template/__init__.py' adding 'snakemake/report/html_reporter/template/index.html.jinja2' adding 'snakemake/report/html_reporter/template/logo.svg' adding 'snakemake/report/html_reporter/template/style.css' adding 'snakemake/report/html_reporter/template/components/__init__.py' adding 'snakemake/report/html_reporter/template/components/abstract_menu.js' adding 'snakemake/report/html_reporter/template/components/abstract_results.js' adding 'snakemake/report/html_reporter/template/components/app.js' adding 'snakemake/report/html_reporter/template/components/breadcrumbs.js' adding 'snakemake/report/html_reporter/template/components/button.js' adding 'snakemake/report/html_reporter/template/components/category.js' adding 'snakemake/report/html_reporter/template/components/common.js' adding 'snakemake/report/html_reporter/template/components/content.js' adding 'snakemake/report/html_reporter/template/components/icon.js' adding 'snakemake/report/html_reporter/template/components/list_heading.js' adding 'snakemake/report/html_reporter/template/components/list_item.js' adding 'snakemake/report/html_reporter/template/components/menu.js' adding 'snakemake/report/html_reporter/template/components/navbar.js' adding 'snakemake/report/html_reporter/template/components/report_info.js' adding 'snakemake/report/html_reporter/template/components/result_info.js' adding 'snakemake/report/html_reporter/template/components/result_view_button.js' adding 'snakemake/report/html_reporter/template/components/rule_graph.js' adding 'snakemake/report/html_reporter/template/components/rule_info.js' adding 'snakemake/report/html_reporter/template/components/search_results.js' adding 'snakemake/report/html_reporter/template/components/stats.js' adding 'snakemake/report/html_reporter/template/components/subcategory.js' adding 'snakemake/script/__init__.py' adding 'snakemake/settings/__init__.py' adding 'snakemake/settings/enums.py' adding 'snakemake/settings/types.py' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-8.18.2.dist-info/LICENSE.md' adding 'snakemake-8.18.2.dist-info/METADATA' adding 'snakemake-8.18.2.dist-info/WHEEL' adding 'snakemake-8.18.2.dist-info/entry_points.txt' adding 'snakemake-8.18.2.dist-info/top_level.txt' adding 'snakemake-8.18.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-8.18.2-py3-none-any.whl size=307217 sha256=8ce4a12d43625d4768753089832d6a85ba7defcb3d10a5cf7abc552ad886e9f8 Stored in directory: /builddir/.cache/pip/wheels/b4/a9/cd/2536f65abc896962a23d47538f30fe428d1ceaa067828ea33b Successfully built snakemake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.smYCiB + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + '[' /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build + mkdir /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 ++ ls /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir/snakemake-8.18.2-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=snakemake==8.18.2 + '[' -z snakemake==8.18.2 ']' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir snakemake==8.18.2 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-8.18.2-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin/snakemake to 755 Successfully installed snakemake-8.18.2 + '[' -d /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin/snakemake /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin/snakemake: updating + rm -rfv /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT --record /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/RECORD --output /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/RECORD removed '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/RECORD' + rm -fv /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/REQUESTED removed '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake-8.18.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/man/man1 + PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages + help2man --no-info '--name=Metapackage for snakemake: messaging extras' snakemake + install -t /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/vim/vimfiles/README.md + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/storage.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/hash.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/hash.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/caching/__pycache__/local.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/tests/testcases/groups/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/tests/testcases/simple/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/tests/testcases/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/argparse.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/configfile.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/git.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/tbdstring.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/typing.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/workdir_handler.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/conda.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/conda.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/containerize.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/env_modules.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/singularity.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/singularity.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/deployment/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/executors/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/executors/__pycache__/dryrun.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/executors/__pycache__/google_lifesciences_helper.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/executors/__pycache__/local.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/report/html_reporter/__pycache__/common.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/report/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/report/__pycache__/common.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/report/__pycache__/rulegraph_spec.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/script/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/script/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/settings/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/settings/__pycache__/enums.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/settings/__pycache__/types.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/settings/__pycache__/types.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/template_rendering/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/template_rendering/__pycache__/jinja2.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/template_rendering/__pycache__/yte.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/unit_tests/templates/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/unit_tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/common/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/__main__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/_version.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/benchmark.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/checkpoints.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/api.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/cli.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/cwl.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/cli.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/exceptions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/gui.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/dag.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/decorators.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/io.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/jobs.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/io.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/ioflags.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/ioutils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/jobs.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/output_index.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/logging.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/modules.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/dag.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/parser.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/notebook.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/profiles.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/parser.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/path_modifier.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/notebook.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/path_modifier.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/persistence.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/persistence.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/ruleinfo.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/resources.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/rules.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/rules.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/shell.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/shell.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/scheduler.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/sourcecache.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/target_jobs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/sourcecache.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/spawn_jobs.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/storage.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/workflow.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/workflow.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/wrapper.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/wrapper.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages/snakemake/__pycache__/spawn_jobs.cpython-313.pyc: replacing with normalized version Scanned 59 directories and 368 files, processed 130 inodes, 129 modified (42 replaced + 87 rewritten), 0 unsupported format, 0 errors Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Pt3QrK + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 + '[' '!' -f /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2-2.fc42.x86_64-pyproject-modules -e '*.tests*' -e snakemake.executors.flux Check import: snakemake Check import: snakemake.api Check import: snakemake.benchmark Check import: snakemake.caching Check import: snakemake.caching.hash Check import: snakemake.caching.local Check import: snakemake.caching.storage Check import: snakemake.checkpoints Check import: snakemake.cli Check import: snakemake.common Check import: snakemake.common.argparse Check import: snakemake.common.configfile Check import: snakemake.common.git Check import: snakemake.common.tbdstring Check import: snakemake.common.typing Check import: snakemake.common.workdir_handler Check import: snakemake.cwl Check import: snakemake.dag Check import: snakemake.decorators Check import: snakemake.deployment Check import: snakemake.deployment.conda Check import: snakemake.deployment.containerize Check import: snakemake.deployment.env_modules Check import: snakemake.deployment.singularity Check import: snakemake.exceptions Check import: snakemake.executors Check import: snakemake.executors.dryrun Check import: snakemake.executors.google_lifesciences_helper Check import: snakemake.executors.local Check import: snakemake.executors.touch Check import: snakemake.gui Check import: snakemake.io Check import: snakemake.ioflags Check import: snakemake.ioutils Check import: snakemake.jobs Check import: snakemake.linting Check import: snakemake.linting.links Check import: snakemake.linting.rules Check import: snakemake.linting.snakefiles Check import: snakemake.logging Check import: snakemake.modules Check import: snakemake.notebook Check import: snakemake.output_index Check import: snakemake.parser Check import: snakemake.path_modifier Check import: snakemake.persistence Check import: snakemake.profiles Check import: snakemake.remote Check import: snakemake.remote.AzBlob Check import: snakemake.remote.EGA Check import: snakemake.remote.FTP Check import: snakemake.remote.GS Check import: snakemake.remote.HTTP Check import: snakemake.remote.NCBI Check import: snakemake.remote.S3 Check import: snakemake.remote.S3Mocked Check import: snakemake.remote.SFTP Check import: snakemake.remote.XRootD Check import: snakemake.remote.dropbox Check import: snakemake.remote.gfal Check import: snakemake.remote.gridftp Check import: snakemake.remote.iRODS Check import: snakemake.remote.webdav Check import: snakemake.remote.zenodo Check import: snakemake.report Check import: snakemake.report.common Check import: snakemake.report.html_reporter Check import: snakemake.report.html_reporter.common Check import: snakemake.report.html_reporter.data Check import: snakemake.report.html_reporter.data.categories Check import: snakemake.report.html_reporter.data.common Check import: snakemake.report.html_reporter.data.configfiles Check import: snakemake.report.html_reporter.data.packages Check import: snakemake.report.html_reporter.data.results Check import: snakemake.report.html_reporter.data.rulegraph Check import: snakemake.report.html_reporter.data.rules Check import: snakemake.report.html_reporter.data.runtimes Check import: snakemake.report.html_reporter.data.timeline Check import: snakemake.report.html_reporter.template Check import: snakemake.report.html_reporter.template.components Check import: snakemake.report.rulegraph_spec Check import: snakemake.resources Check import: snakemake.ruleinfo Check import: snakemake.rules Check import: snakemake.scheduler Check import: snakemake.script Check import: snakemake.settings Check import: snakemake.settings.enums Check import: snakemake.settings.types Check import: snakemake.shell Check import: snakemake.sourcecache Check import: snakemake.spawn_jobs Check import: snakemake.storage Check import: snakemake.target_jobs Check import: snakemake.template_rendering Check import: snakemake.template_rendering.jinja2 Check import: snakemake.template_rendering.yte Check import: snakemake.unit_tests Check import: snakemake.unit_tests.templates Check import: snakemake.utils Check import: snakemake.workflow Check import: snakemake.wrapper + k='not test_ancient' + k='not test_ancient and not test_containerized' + k='not test_ancient and not test_containerized and not test_default_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode and not test_upstream_conda' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode and not test_upstream_conda and not test_group_job_resources_with_pipe' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode and not test_upstream_conda and not test_group_job_resources_with_pipe' tests/tests.py tests/test_expand.py tests/test_io.py tests/test_schema.py tests/test_linting.py tests/test_executor_test_suite.py ============================= test session starts ============================== platform linux -- Python 3.13.0rc1, pytest-8.3.1, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2 configfile: pyproject.toml plugins: mock-3.14.0 collecting ... collected 343 items / 60 deselected / 283 selected tests/tests.py::test_list_untracked PASSED [ 0%] tests/tests.py::test_delete_all_output PASSED [ 0%] tests/tests.py::test_github_issue_14 PASSED [ 1%] tests/tests.py::test_issue956 PASSED [ 1%] tests/tests.py::test01 PASSED [ 1%] tests/tests.py::test02 PASSED [ 2%] tests/tests.py::test03 PASSED [ 2%] tests/tests.py::test04 PASSED [ 2%] tests/tests.py::test05 PASSED [ 3%] tests/tests.py::test06 PASSED [ 3%] tests/tests.py::test07 PASSED [ 3%] tests/tests.py::test08 PASSED [ 4%] tests/tests.py::test09 PASSED [ 4%] tests/tests.py::test10 PASSED [ 4%] tests/tests.py::test11 PASSED [ 5%] tests/tests.py::test12 PASSED [ 5%] tests/tests.py::test13 PASSED [ 6%] tests/tests.py::test15 PASSED [ 6%] tests/tests.py::test_set_threads PASSED [ 6%] tests/tests.py::test_glpk_solver PASSED [ 7%] tests/tests.py::test_coin_solver PASSED [ 7%] tests/tests.py::test_directory PASSED [ 7%] tests/tests.py::test_directory2 PASSED [ 8%] tests/tests.py::test_set_resources_complex_profile PASSED [ 8%] tests/tests.py::test_set_resources_complex_cli PASSED [ 8%] tests/tests.py::test_params PASSED [ 9%] tests/tests.py::test_same_wildcard PASSED [ 9%] tests/tests.py::test_conditional PASSED [ 9%] tests/tests.py::test_unpack_dict PASSED [ 10%] tests/tests.py::test_unpack_list PASSED [ 10%] tests/tests.py::test_shell PASSED [ 10%] tests/tests.py::test_temp PASSED [ 11%] tests/tests.py::test_keyword_list PASSED [ 11%] tests/tests.py::test_globwildcards PASSED [ 12%] tests/tests.py::test_ioutils PASSED [ 12%] tests/tests.py::test_local_import PASSED [ 12%] tests/tests.py::test_ruledeps PASSED [ 13%] tests/tests.py::test_url_include SKIPPED (no internet connection) [ 13%] tests/tests.py::test_touch PASSED [ 13%] tests/tests.py::test_touch_flag_with_directories PASSED [ 14%] tests/tests.py::test_config PASSED [ 14%] tests/tests.py::test_update_config PASSED [ 14%] tests/tests.py::test_config_merging PASSED [ 15%] tests/tests.py::test_wildcard_keyword PASSED [ 15%] tests/tests.py::test_benchmark PASSED [ 15%] tests/tests.py::test_benchmark_jsonl PASSED [ 16%] tests/tests.py::test_temp_expand PASSED [ 16%] tests/tests.py::test_wildcard_count_ambiguity PASSED [ 16%] tests/tests.py::test_multiple_includes PASSED [ 17%] tests/tests.py::test_name_override PASSED [ 17%] tests/tests.py::test_yaml_config PASSED [ 18%] tests/tests.py::test_symlink_temp SKIPPED (This does not work reliab...) [ 18%] tests/tests.py::test_empty_include PASSED [ 18%] tests/tests.py::test_shadow PASSED [ 19%] tests/tests.py::test_shadow_copy PASSED [ 19%] tests/tests.py::test_shadow_prefix PASSED [ 19%] tests/tests.py::test_shadowed_log PASSED [ 20%] tests/tests.py::test_until PASSED [ 20%] tests/tests.py::test_omitfrom PASSED [ 20%] tests/tests.py::test_nonstr_params PASSED [ 21%] tests/tests.py::test_delete_output PASSED [ 21%] tests/tests.py::test_input_generator PASSED [ 21%] tests/tests.py::test_symlink_time_handling PASSED [ 22%] tests/tests.py::test_protected_symlink_output PASSED [ 22%] tests/tests.py::test_get_log_none PASSED [ 22%] tests/tests.py::test_get_log_both PASSED [ 23%] tests/tests.py::test_get_log_stderr PASSED [ 23%] tests/tests.py::test_get_log_stdout PASSED [ 24%] tests/tests.py::test_get_log_complex PASSED [ 24%] tests/tests.py::test_spaces_in_fnames PASSED [ 24%] tests/tests.py::test_deferred_func_eval PASSED [ 25%] tests/tests.py::test_format_params PASSED [ 25%] tests/tests.py::test_rule_defined_in_for_loop PASSED [ 25%] tests/tests.py::test_issue381 PASSED [ 26%] tests/tests.py::test_format_wildcards PASSED [ 26%] tests/tests.py::test_with_parentheses PASSED [ 26%] tests/tests.py::test_dup_out_patterns PASSED [ 27%] tests/tests.py::test_issue2826_failed_binary_logs PASSED [ 27%] tests/tests.py::test_threads PASSED [ 27%] tests/tests.py::test_threads0 PASSED [ 28%] tests/tests.py::test_run_namedlist PASSED [ 28%] tests/tests.py::test_profile PASSED [ 28%] tests/tests.py::test_singularity SKIPPED (no internet connection) [ 29%] tests/tests.py::test_singularity_cluster SKIPPED (no internet connec...) [ 29%] tests/tests.py::test_singularity_invalid PASSED [ 30%] tests/tests.py::test_singularity_module_invalid PASSED [ 30%] tests/tests.py::test_singularity_none SKIPPED (no internet connection) [ 30%] tests/tests.py::test_singularity_global SKIPPED (no internet connection) [ 31%] tests/tests.py::test_issue612 PASSED [ 31%] tests/tests.py::test_bash PASSED [ 31%] tests/tests.py::test_inoutput_is_path PASSED [ 32%] tests/tests.py::test_log_input PASSED [ 32%] tests/tests.py::test_issue805 PASSED [ 32%] tests/tests.py::test_issue823_1 PASSED [ 33%] tests/tests.py::test_issue823_2 PASSED [ 33%] tests/tests.py::test_issue823_3 PASSED [ 33%] tests/tests.py::test_pathlib PASSED [ 34%] tests/tests.py::test_pathlib_missing_file PASSED [ 34%] tests/tests.py::test_group_jobs PASSED [ 34%] tests/tests.py::test_group_jobs_attempts PASSED [ 35%] tests/tests.py::test_groups_out_of_jobs PASSED [ 35%] tests/tests.py::test_group_jobs_resources PASSED [ 36%] tests/tests.py::test_group_jobs_resources_with_max_threads PASSED [ 36%] tests/tests.py::test_group_jobs_resources_with_limited_resources PASSED [ 36%] tests/tests.py::test_global_resource_limits_limit_scheduling_of_groups PASSED [ 37%] tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 37%] tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 37%] tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 38%] tests/tests.py::test_resources_submitted_to_cluster PASSED [ 38%] tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 38%] tests/tests.py::test_multicomp_group_jobs PASSED [ 39%] tests/tests.py::test_group_job_fail PASSED [ 39%] tests/tests.py::test_pipes_simple PASSED [ 39%] tests/tests.py::test_pipes_multiple PASSED [ 40%] tests/tests.py::test_pipes_fail PASSED [ 40%] tests/tests.py::test_validate PASSED [ 40%] tests/tests.py::test_validate_fail PASSED [ 41%] tests/tests.py::test_issue854 PASSED [ 41%] tests/tests.py::test_issue850 PASSED [ 42%] tests/tests.py::test_issue860 PASSED [ 42%] tests/tests.py::test_issue894 PASSED [ 42%] tests/tests.py::test_issue584 PASSED [ 43%] tests/tests.py::test_issue912 PASSED [ 43%] tests/tests.py::test_job_properties PASSED [ 43%] tests/tests.py::test_issue916 PASSED [ 44%] tests/tests.py::test_issue930 PASSED [ 44%] tests/tests.py::test_convert_to_cwl SKIPPED (Temporarily disable unt...) 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tests/test_linting.py::test_lint[path_add-positive] PASSED [ 97%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 97%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 98%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 98%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 98%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 99%] tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow PASSED [ 99%] tests/test_executor_test_suite.py::TestWorkflows::test_group_workflow PASSED [100%] =============================== warnings summary =============================== tests/tests.py::test_list_untracked :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/tests.py::test_list_untracked :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/tests.py::test_list_untracked /usr/lib64/python3.13/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/tests.py: 4 warnings tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/snakemake/utils.py:52: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html === 272 passed, 11 skipped, 60 deselected, 19 warnings in 402.78s (0:06:42) ==== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-8.18.2-2.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hkNXJj + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + cd snakemake-8.18.2 + DOCDIR=/builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/CHANGELOG.md /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/README.md /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/README-nano.md /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2-build/snakemake-8.18.2/README-vim.md /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.13dist(snakemake) = 8.18.2 python3dist(snakemake) = 8.18.2 snakemake = 8.18.2-2.fc42 vim-snakemake = 8.18.2-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.13dist(conda-inject) < 2~~ with python3.13dist(conda-inject) >= 1.3.1) (python3.13dist(dpath) < 3~~ with python3.13dist(dpath) >= 2.1.6) (python3.13dist(jinja2) < 4~~ with python3.13dist(jinja2) >= 3) (python3.13dist(pulp) < 2.9~~ with python3.13dist(pulp) >= 2.3.1) (python3.13dist(requests) < 3~~ with python3.13dist(requests) >= 2.8.1) (python3.13dist(smart-open) < 8~~ with python3.13dist(smart-open) >= 4) (python3.13dist(snakemake-interface-common) < 2~~ with python3.13dist(snakemake-interface-common) >= 1.17) (python3.13dist(snakemake-interface-executor-plugins) < 10~~ with python3.13dist(snakemake-interface-executor-plugins) >= 9.2) (python3.13dist(snakemake-interface-report-plugins) < 2~~ with python3.13dist(snakemake-interface-report-plugins) >= 1) (python3.13dist(snakemake-interface-storage-plugins) < 4~~ with python3.13dist(snakemake-interface-storage-plugins) >= 3.2.3) (python3.13dist(toposort) < 2~~ with python3.13dist(toposort) >= 1.10) (python3.13dist(yte) < 2~~ with python3.13dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.13 python3.13dist(appdirs) python3.13dist(configargparse) python3.13dist(connection-pool) >= 0.0.3 python3.13dist(datrie) python3.13dist(docutils) python3.13dist(gitpython) python3.13dist(humanfriendly) python3.13dist(immutables) python3.13dist(jsonschema) python3.13dist(nbformat) python3.13dist(packaging) python3.13dist(psutil) python3.13dist(pyyaml) python3.13dist(reretry) python3.13dist(stopit) python3.13dist(tabulate) python3.13dist(throttler) python3.13dist(wrapt) Obsoletes: snakemake+azure < 8.1.0-1 snakemake+google-cloud < 8.1.0-1 snakemake-doc < 8.2.1-2 Processing files: snakemake+reports-8.18.2-2.fc42.noarch Provides: python3.13dist(snakemake[reports]) = 8.18.2 python3dist(snakemake[reports]) = 8.18.2 snakemake+reports = 8.18.2-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.13 python3.13dist(pygments) Processing files: snakemake+messaging-8.18.2-2.fc42.noarch Provides: python3.13dist(snakemake[messaging]) = 8.18.2 python3dist(snakemake[messaging]) = 8.18.2 snakemake+messaging = 8.18.2-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.13 python3.13dist(slack-sdk) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/snakemake-8.18.2-build/BUILDROOT Wrote: /builddir/build/SRPMS/snakemake-8.18.2-2.fc42.src.rpm Wrote: /builddir/build/RPMS/snakemake+reports-8.18.2-2.fc42.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-8.18.2-2.fc42.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-8.18.2-2.fc42.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DtFOuI + umask 022 + cd /builddir/build/BUILD/snakemake-8.18.2-build + test -d /builddir/build/BUILD/snakemake-8.18.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/snakemake-8.18.2-build + rm -rf /builddir/build/BUILD/snakemake-8.18.2-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-8.18.2-2.fc42.src.rpm Finish: build phase for snakemake-8.18.2-2.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1724417054.954945/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-8.18.2-2.fc42.src.rpm) Config(child) 7 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake", "epoch": null, "version": "8.18.2", "release": "2.fc42", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.18.2", "release": "2.fc42", "arch": "src" }, { "name": "snakemake+reports", "epoch": null, "version": "8.18.2", "release": "2.fc42", "arch": "noarch" }, { "name": "snakemake+messaging", "epoch": null, "version": "8.18.2", "release": "2.fc42", "arch": "noarch" } ] } RPMResults finished