Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d4' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7992556-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 21287 Logging PID: 21288 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 7992556, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ab448078e2e66a6a8a0de661cff68064395d6a8d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/python-bioframe', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-bioframe', 'package_version': '0.7.2-3', 'project_dirname': 'python3.13', 'project_name': 'python3.13', 'project_owner': '@python', 'repo_priority': 9, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.13/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': 9}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f41-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch'}], 'sandbox': '@python/python3.13--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '7992556-fedora-rawhide-x86_64', 'timeout': None, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/python-bioframe /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/python-bioframe', '/var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe'... Running: git checkout ab448078e2e66a6a8a0de661cff68064395d6a8d -- cmd: ['git', 'checkout', 'ab448078e2e66a6a8a0de661cff68064395d6a8d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe rc: 0 stdout: stderr: Note: switching to 'ab448078e2e66a6a8a0de661cff68064395d6a8d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ab44807 automatic import of python-bioframe Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bioframe-0.7.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o bioframe-0.7.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.13/python-bioframe/bioframe-0.7.2.tar.gz/md5/94c13951e975f0c663ee118f72512ea9/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 950k 100 950k 0 0 5922k 0 --:--:-- --:--:-- --:--:-- 5939k INFO: Reading stdout from command: md5sum bioframe-0.7.2.tar.gz Running (timeout=None): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe/python-bioframe.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725738522.569121 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe/python-bioframe.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725738522.569121 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe/python-bioframe.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725738522.569121/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 923.8 KiB/s | 26.8 KiB | 00m00s Copr repository 100% | 44.0 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 75.1 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 46.4 MiB/s | 11.6 MiB | 00m00s Repositories loaded. 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1.6.1-6.fc42 fedora 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.93-1.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 copr_base 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 copr_base 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. 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Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [110/155] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [111/155] Installing shadow-utils-2:4.1 100% | 119.8 MiB/s | 4.2 MiB | 00m00s [112/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [113/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [114/155] Installing coreutils-common-0 100% | 248.7 MiB/s | 11.2 MiB | 00m00s [115/155] Installing openssl-libs-1:3.2 100% | 301.0 MiB/s | 7.8 MiB | 00m00s [116/155] Installing coreutils-0:9.5-9. 100% | 146.6 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [117/155] Installing ca-certificates-0: 100% | 2.5 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: 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[130/155] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.5 KiB | 00m00s [131/155] Installing openldap-0:2.6.8-5 100% | 126.6 MiB/s | 648.0 KiB | 00m00s [132/155] Installing libcurl-0:8.9.1-3. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [135/155] Installing binutils-0:2.43.1- 100% | 267.3 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [136/155] Installing elfutils-0:0.191-8 100% | 196.9 MiB/s | 2.6 MiB | 00m00s [137/155] Installing gdb-minimal-0:15.1 100% | 309.3 MiB/s | 13.0 MiB | 00m00s [138/155] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [139/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 39.0 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 86.2 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 86.4 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 255.6 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 122 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc42.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-3.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc42.x86_64 libgomp-14.2.1-1.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1725738522.569121/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725738522.569121/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-7c9wsamn/python-bioframe/python-bioframe.spec) Config(child) 0 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-bioframe-0.7.2-3.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725738522.569121/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for python-bioframe-0.7.2-3.fc42.src.rpm Start: build setup for python-bioframe-0.7.2-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 60.8 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 29.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 811.9 KiB/s | 26.8 KiB | 00m00s Copr repository 100% | 50.8 MiB/s | 11.6 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: python3-devel x86_64 3.13.0~rc2-1.fc42 copr_base 1.8 MiB Installing dependencies: expat x86_64 2.6.3-1.fc42 fedora 291.5 KiB libb2 x86_64 0.98.1-12.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 42.2 KiB mpdecimal x86_64 2.5.1-16.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 204.9 KiB pyproject-rpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 105.7 KiB python-pip-wheel noarch 24.2-1.fc41 copr_base 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 22.1 KiB python3 x86_64 3.13.0~rc2-1.fc42 copr_base 31.8 KiB python3-libs x86_64 3.13.0~rc2-1.fc42 copr_base 40.3 MiB python3-packaging noarch 24.1-2.fc41 copr_base 422.3 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 6.4 KiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Transaction Summary: Installing: 13 packages Total size of inbound packages is 11 MiB. Need to download 0 B. After this operation 46 MiB will be used (install 46 MiB, remove 0 B). [ 1/13] python3-devel-0:3.13.0~rc2-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/13] python3-0:3.13.0~rc2-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/13] python3-libs-0:3.13.0~rc2-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/13] expat-0:2.6.3-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/13] libb2-0:0.98.1-12.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/13] mpdecimal-0:2.5.1-16.fc41.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 7/13] python-pip-wheel-0:24.2-1.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 8/13] tzdata-0:2024a-9.fc41.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/13] pyproject-rpm-macros-0:1.14.0-1 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [10/13] python-rpm-macros-0:3.13-3.fc41 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [11/13] python3-rpm-generators-0:14-11. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [12/13] python3-rpm-macros-0:3.13-3.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [13/13] python3-packaging-0:24.1-2.fc41 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [13/13] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [ 1/15] Verify package files 100% | 270.0 B/s | 13.0 B | 00m00s [ 2/15] Prepare transaction 100% | 325.0 B/s | 13.0 B | 00m00s [ 3/15] Installing python-rpm-macros-0: 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 4/15] Installing python3-rpm-macros-0 100% | 6.5 MiB/s | 6.7 KiB | 00m00s [ 5/15] Installing pyproject-rpm-macros 100% | 35.0 MiB/s | 107.7 KiB | 00m00s [ 6/15] Installing tzdata-0:2024a-9.fc4 100% | 26.6 MiB/s | 1.9 MiB | 00m00s [ 7/15] Installing python-pip-wheel-0:2 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [ 8/15] Installing mpdecimal-0:2.5.1-16 100% | 201.2 MiB/s | 206.0 KiB | 00m00s [ 9/15] Installing libb2-0:0.98.1-12.fc 100% | 42.3 MiB/s | 43.3 KiB | 00m00s [10/15] Installing expat-0:2.6.3-1.fc42 100% | 47.8 MiB/s | 293.6 KiB | 00m00s [11/15] Installing python3-libs-0:3.13. 100% | 199.5 MiB/s | 40.7 MiB | 00m00s [12/15] Installing python3-0:3.13.0~rc2 100% | 32.8 MiB/s | 33.6 KiB | 00m00s [13/15] Installing python3-packaging-0: 100% | 105.8 MiB/s | 433.2 KiB | 00m00s [14/15] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [15/15] Installing python3-devel-0:3.13 100% | 26.3 MiB/s | 1.8 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 Warning: skipped PGP checks for 12 package(s). Finish: build setup for python-bioframe-0.7.2-3.fc42.src.rpm Start: rpmbuild python-bioframe-0.7.2-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.wTIZuR + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + test -d /builddir/build/BUILD/python-bioframe-0.7.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-bioframe-0.7.2-build + /usr/bin/rm -rf /builddir/build/BUILD/python-bioframe-0.7.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1VpXn4 + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + rm -rf bioframe-0.7.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bioframe-0.7.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd bioframe-0.7.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i '/"ruff"/ d' pyproject.toml + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.gQAPV1 + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd bioframe-0.7.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires -x dev Handling hatchling from build-system.requires Requirement not satisfied: hatchling Handling hatch-vcs from build-system.requires Requirement not satisfied: hatch-vcs Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 705.1 KiB/s | 26.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 75.1 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 5.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0~rc2-1.fc42.x86_64" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-hatch-vcs noarch 0.4.0-6.fc41 copr_base 33.9 KiB python3-hatchling noarch 1.25.0-1.fc41 copr_base 709.9 KiB python3-pip noarch 24.2-1.fc41 copr_base 11.4 MiB Installing dependencies: python3-pathspec noarch 0.12.1-7.fc42 copr_base 195.2 KiB python3-pluggy noarch 1.5.0-1.fc42 copr_base 193.2 KiB python3-setuptools noarch 69.2.0-8.fc41 copr_base 7.2 MiB python3-setuptools_scm noarch 8.0.4-6.fc41 copr_base 310.7 KiB python3-trove-classifiers noarch 2024.7.2-1.fc42 copr_base 91.8 KiB python3-typing-extensions noarch 4.12.2-3.fc41 copr_base 464.5 KiB Transaction Summary: Installing: 9 packages Total size of inbound packages is 5 MiB. Need to download 3 MiB. After this operation 21 MiB will be used (install 21 MiB, remove 0 B). [1/9] python3-setuptools-0:69.2.0-8.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/9] python3-hatch-vcs-0:0.4.0-6.fc41. 100% | 523.1 KiB/s | 23.5 KiB | 00m00s [3/9] python3-hatchling-0:1.25.0-1.fc41 100% | 3.1 MiB/s | 207.5 KiB | 00m00s [4/9] python3-pathspec-0:0.12.1-7.fc42. 100% | 2.4 MiB/s | 56.8 KiB | 00m00s [5/9] python3-pluggy-0:1.5.0-1.fc42.noa 100% | 3.5 MiB/s | 53.7 KiB | 00m00s [6/9] python3-trove-classifiers-0:2024. 100% | 2.1 MiB/s | 27.3 KiB | 00m00s [7/9] python3-setuptools_scm-0:8.0.4-6. 100% | 6.4 MiB/s | 99.0 KiB | 00m00s [8/9] python3-typing-extensions-0:4.12. 100% | 4.6 MiB/s | 94.4 KiB | 00m00s [9/9] python3-pip-0:24.2-1.fc41.noarch 100% | 17.5 MiB/s | 2.5 MiB | 00m00s -------------------------------------------------------------------------------- [9/9] Total 100% | 21.2 MiB/s | 3.1 MiB | 00m00s Running transaction [ 1/11] Verify package files 100% | 428.0 B/s | 9.0 B | 00m00s [ 2/11] Prepare transaction 100% | 310.0 B/s | 9.0 B | 00m00s [ 3/11] Installing python3-typing-exten 100% | 114.0 MiB/s | 466.9 KiB | 00m00s [ 4/11] Installing python3-setuptools-0 100% | 130.9 MiB/s | 7.3 MiB | 00m00s [ 5/11] Installing python3-setuptools_s 100% | 53.7 MiB/s | 329.8 KiB | 00m00s [ 6/11] Installing python3-trove-classi 100% | 46.4 MiB/s | 95.0 KiB | 00m00s [ 7/11] Installing python3-pluggy-0:1.5 100% | 64.9 MiB/s | 199.4 KiB | 00m00s [ 8/11] Installing python3-pathspec-0:0 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [ 9/11] Installing python3-hatchling-0: 100% | 46.3 MiB/s | 759.1 KiB | 00m00s [10/11] Installing python3-hatch-vcs-0: 100% | 9.8 MiB/s | 39.9 KiB | 00m00s [11/11] Installing python3-pip-0:24.2-1 100% | 88.4 MiB/s | 11.7 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 Warning: skipped PGP checks for 9 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.HoBEeL + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd bioframe-0.7.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires -x dev Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.25.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: matplotlib Handling numpy<2,>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: numpy<2,>=1.10 Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pandas>=1.3 Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pyyaml Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: requests Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: biopython; extra == 'dev' Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pybbi; extra == 'dev' Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pysam; extra == 'dev' Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pytest; extra == 'dev' Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.7.2.dist-info/ removed 'bioframe-0.7.2.dist-info/METADATA' removed directory 'bioframe-0.7.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 956.9 KiB/s | 26.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 69.7 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 35.8 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-biopython x86_64 1.84-3.fc41 copr_base 30.0 MiB python3-matplotlib x86_64 3.9.1-2.fc41 copr_base 21.1 MiB python3-numpy x86_64 1:1.26.4-8.fc41 copr_base 43.8 MiB python3-pandas x86_64 2.2.1-7.fc41 copr_base 42.0 MiB python3-pybbi x86_64 0.4.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 MiB python3-pysam x86_64 0.22.1-2.fc41 copr_base 7.0 MiB python3-pytest noarch 8.3.1-5.fc42 copr_base 20.8 MiB python3-pyyaml x86_64 6.0.1-18.fc41 copr_base 791.1 KiB python3-requests noarch 2.32.3-3.fc41 copr_base 485.9 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 192.7 KiB cairo x86_64 1.18.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 5.5 MiB flex x86_64 2.6.4-18.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 805.4 KiB flexiblas x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B freetype x86_64 2.13.2-6.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 850.6 KiB fribidi x86_64 1.0.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 368.4 KiB glib2 x86_64 2.82.0-1.fc42 fedora 14.7 MiB gnutls x86_64 3.8.7-2.fc42 fedora 3.2 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 x86_64 1.3.14-16.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 192.0 KiB harfbuzz x86_64 9.0.0-3.fc42 fedora 2.6 MiB jbigkit-libs x86_64 2.1-30.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 117.6 KiB lcms2 x86_64 2.16-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 424.9 KiB libX11 x86_64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libXau x86_64 1.0.11-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 66.9 KiB libXext x86_64 1.3.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 90.1 KiB libXft x86_64 2.3.8-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 164.5 KiB libXrender x86_64 0.9.11-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 50.1 KiB libgfortran x86_64 14.2.1-1.fc42 fedora 3.0 MiB libimagequant x86_64 4.0.3-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 666.7 KiB libjpeg-turbo x86_64 3.0.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 776.9 KiB liblerc x86_64 4.0.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 607.5 KiB libpng x86_64 2:1.6.40-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 245.8 KiB libqhull_r x86_64 1:8.0.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 483.4 KiB libquadmath x86_64 14.2.1-1.fc42 fedora 325.9 KiB libraqm x86_64 0.8.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 28.6 KiB libtiff x86_64 4.6.0-6.fc42 fedora 606.0 KiB libwebp x86_64 1.4.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 822.6 KiB libxcb x86_64 1.17.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 MiB libxslt x86_64 1.1.42-3.fc41 copr_base 483.0 KiB libyaml x86_64 0.2.5-15.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.4 KiB m4 x86_64 1.4.19-10.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 592.9 KiB nettle x86_64 3.10-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 793.0 KiB openblas x86_64 0.3.26-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 39.4 MiB openjpeg x86_64 2.5.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 445.7 KiB pixman x86_64 0.43.4-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 718.1 KiB python3-Bottleneck x86_64 1.3.7-8.fc42 copr_base 635.3 KiB python3-appdirs noarch 1.4.4-24.fc42 copr_base 68.7 KiB python3-brotli x86_64 1.1.0-5.fc41 copr_base 836.0 KiB python3-cairo x86_64 1.25.1-5.fc41 copr_base 492.5 KiB python3-charset-normalizer noarch 3.3.2-6.fc41 copr_base 314.8 KiB python3-contourpy x86_64 1.3.0-1.fc42 copr_base 808.6 KiB python3-cycler noarch 0.11.0-14.fc42 copr_base 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 copr_base 879.2 KiB python3-fonttools x86_64 4.53.1-2.fc42 copr_base 18.2 MiB python3-fs noarch 2.4.16-9.fc41 copr_base 1.3 MiB python3-idna noarch 3.8-1.fc42 copr_base 596.4 KiB python3-iniconfig noarch 1.1.1-24.fc41 copr_base 20.6 KiB python3-kiwisolver x86_64 1.4.7-1.fc42 copr_base 153.9 KiB python3-lxml x86_64 5.3.0-1.fc41 copr_base 4.9 MiB python3-matplotlib-data noarch 3.9.1-2.fc41 copr_base 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 copr_base 7.9 MiB python3-matplotlib-tk x86_64 3.9.1-2.fc41 copr_base 262.7 KiB python3-numexpr x86_64 2.8.5-7.fc41 copr_base 574.8 KiB python3-numpy-f2py x86_64 1:1.26.4-8.fc41 copr_base 2.8 MiB python3-olefile noarch 0.47-5.fc41 copr_base 340.4 KiB python3-pillow x86_64 10.4.0-2.fc41 copr_base 3.7 MiB python3-pillow-tk x86_64 10.4.0-2.fc41 copr_base 68.4 KiB python3-platformdirs noarch 4.2.2-2.fc41 copr_base 168.6 KiB python3-pooch noarch 1.8.2-4.fc42 copr_base 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 copr_base 1.0 MiB python3-pytz noarch 2024.1-3.fc41 copr_base 223.7 KiB python3-scipy x86_64 1.11.3-15.fc41 copr_base 62.5 MiB python3-six noarch 1.16.0-24.fc42 copr_base 118.3 KiB python3-tkinter x86_64 3.13.0~rc2-1.fc42 copr_base 2.0 MiB python3-urllib3 noarch 1.26.19-2.fc41 copr_base 1.0 MiB tcl x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 4.2 MiB tk x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 3.6 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 78.4 KiB Transaction Summary: Installing: 87 packages Package "python3-devel-3.13.0~rc2-1.fc42.x86_64" is already installed. Package "python3-hatch-vcs-0.4.0-6.fc41.noarch" is already installed. Package "python3-hatchling-1.25.0-1.fc41.noarch" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Total size of inbound packages is 90 MiB. Need to download 85 MiB. After this operation 386 MiB will be used (install 386 MiB, remove 0 B). [ 1/87] flex-0:2.6.4-18.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/87] m4-0:1.4.19-10.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/87] glib2-0:2.82.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/87] gnutls-0:3.8.7-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/87] nettle-0:3.10-3.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/87] python3-matplotlib-0:3.9.1-2.fc 100% | 21.4 MiB/s | 4.5 MiB | 00m00s [ 7/87] python3-biopython-0:1.84-3.fc41 100% | 42.8 MiB/s | 11.6 MiB | 00m00s [ 8/87] python3-numpy-1:1.26.4-8.fc41.x 100% | 22.7 MiB/s | 7.4 MiB | 00m00s [ 9/87] python3-pybbi-0:0.4.0-3.fc41.x8 100% | 3.3 MiB/s | 397.9 KiB | 00m00s [10/87] python3-pandas-0:2.2.1-7.fc41.x 100% | 35.7 MiB/s | 7.9 MiB | 00m00s [11/87] python3-pytest-0:8.3.1-5.fc42.n 100% | 32.9 MiB/s | 2.0 MiB | 00m00s [12/87] python3-pysam-0:0.22.1-2.fc41.x 100% | 16.8 MiB/s | 2.4 MiB | 00m00s [13/87] python3-pyyaml-0:6.0.1-18.fc41. 100% | 6.7 MiB/s | 221.1 KiB | 00m00s [14/87] python3-requests-0:2.32.3-3.fc4 100% | 8.6 MiB/s | 149.6 KiB | 00m00s [15/87] python3-charset-normalizer-0:3. 100% | 10.8 MiB/s | 99.7 KiB | 00m00s [16/87] python3-idna-0:3.8-1.fc42.noarc 100% | 12.0 MiB/s | 111.0 KiB | 00m00s [17/87] python3-urllib3-0:1.26.19-2.fc4 100% | 23.0 MiB/s | 259.5 KiB | 00m00s [18/87] python3-iniconfig-0:1.1.1-24.fc 100% | 2.3 MiB/s | 18.6 KiB | 00m00s [19/87] python3-Bottleneck-0:1.3.7-8.fc 100% | 16.2 MiB/s | 165.6 KiB | 00m00s [20/87] libyaml-0:0.2.5-15.fc41.x86_64 100% | 3.4 MiB/s | 59.4 KiB | 00m00s [21/87] python3-dateutil-1:2.8.2-16.fc4 100% | 28.4 MiB/s | 349.6 KiB | 00m00s [22/87] python3-numexpr-0:2.8.5-7.fc41. 100% | 15.8 MiB/s | 162.2 KiB | 00m00s [23/87] python3-pytz-0:2024.1-3.fc41.no 100% | 5.9 MiB/s | 60.6 KiB | 00m00s [24/87] flexiblas-netlib-0:3.4.4-3.fc41 100% | 55.5 MiB/s | 3.2 MiB | 00m00s [25/87] libqhull_r-1:8.0.2-5.fc41.x86_6 100% | 9.9 MiB/s | 201.8 KiB | 00m00s [26/87] python3-cairo-0:1.25.1-5.fc41.x 100% | 12.2 MiB/s | 125.1 KiB | 00m00s [27/87] freetype-0:2.13.2-6.fc41.x86_64 100% | 4.3 MiB/s | 410.7 KiB | 00m00s [28/87] python3-contourpy-0:1.3.0-1.fc4 100% | 23.5 MiB/s | 264.7 KiB | 00m00s [29/87] python3-cycler-0:0.11.0-14.fc42 100% | 2.4 MiB/s | 21.8 KiB | 00m00s [30/87] dejavu-sans-fonts-0:2.37-24.fc4 100% | 11.5 MiB/s | 1.3 MiB | 00m00s [31/87] python3-fonttools-0:4.53.1-2.fc 100% | 68.0 MiB/s | 2.9 MiB | 00m00s [32/87] python3-kiwisolver-0:1.4.7-1.fc 100% | 1.9 MiB/s | 67.2 KiB | 00m00s [33/87] python3-matplotlib-data-0:3.9.1 100% | 18.4 MiB/s | 509.4 KiB | 00m00s [34/87] python3-matplotlib-tk-0:3.9.1-2 100% | 12.2 MiB/s | 112.1 KiB | 00m00s [35/87] python3-tkinter-0:3.13.0~rc2-1. 100% | 29.0 MiB/s | 356.2 KiB | 00m00s [36/87] python3-pillow-0:10.4.0-2.fc41. 100% | 43.7 MiB/s | 939.8 KiB | 00m00s [37/87] python3-pyparsing-0:3.1.2-7.fc4 100% | 18.9 MiB/s | 270.8 KiB | 00m00s [38/87] python3-brotli-0:1.1.0-5.fc41.x 100% | 25.7 MiB/s | 341.6 KiB | 00m00s [39/87] python3-fs-0:2.4.16-9.fc41.noar 100% | 24.9 MiB/s | 280.7 KiB | 00m00s [40/87] python3-lxml-0:5.3.0-1.fc41.x86 100% | 56.1 MiB/s | 1.3 MiB | 00m00s [41/87] python3-six-0:1.16.0-24.fc42.no 100% | 1.5 MiB/s | 41.8 KiB | 00m00s [42/87] cairo-0:1.18.0-4.fc41.x86_64 100% | 10.8 MiB/s | 709.9 KiB | 00m00s [43/87] python3-scipy-0:1.11.3-15.fc41. 100% | 82.2 MiB/s | 15.9 MiB | 00m00s [44/87] libpng-2:1.6.40-4.fc41.x86_64 100% | 1.1 MiB/s | 120.3 KiB | 00m00s [45/87] harfbuzz-0:9.0.0-3.fc42.x86_64 100% | 6.0 MiB/s | 1.0 MiB | 00m00s [46/87] flexiblas-0:3.4.4-3.fc41.x86_64 100% | 1.5 MiB/s | 25.3 KiB | 00m00s [47/87] flexiblas-openblas-openmp-0:3.4 100% | 958.1 KiB/s | 17.2 KiB | 00m00s [48/87] libgfortran-0:14.2.1-1.fc42.x86 100% | 53.9 MiB/s | 938.1 KiB | 00m00s [49/87] fonts-filesystem-1:2.0.5-17.fc4 100% | 471.3 KiB/s | 8.5 KiB | 00m00s [50/87] fontconfig-0:2.15.0-8.fc41.x86_ 100% | 13.2 MiB/s | 257.0 KiB | 00m00s [51/87] libX11-0:1.8.10-2.fc42.x86_64 100% | 42.3 MiB/s | 649.7 KiB | 00m00s [52/87] libXext-0:1.3.6-2.fc41.x86_64 100% | 2.2 MiB/s | 39.1 KiB | 00m00s [53/87] libquadmath-0:14.2.1-1.fc42.x86 100% | 3.7 MiB/s | 201.5 KiB | 00m00s [54/87] libXrender-0:0.9.11-7.fc41.x86_ 100% | 1.6 MiB/s | 27.5 KiB | 00m00s [55/87] libxcb-0:1.17.0-2.fc41.x86_64 100% | 12.0 MiB/s | 234.2 KiB | 00m00s [56/87] libX11-common-0:1.8.10-2.fc42.n 100% | 3.8 MiB/s | 175.9 KiB | 00m00s [57/87] pixman-0:0.43.4-2.fc41.x86_64 100% | 15.1 MiB/s | 294.1 KiB | 00m00s [58/87] graphite2-0:1.3.14-16.fc41.x86_ 100% | 5.5 MiB/s | 95.1 KiB | 00m00s [59/87] python3-numpy-f2py-1:1.26.4-8.f 100% | 30.6 MiB/s | 501.6 KiB | 00m00s [60/87] python3-pooch-0:1.8.2-4.fc42.no 100% | 10.3 MiB/s | 126.9 KiB | 00m00s [61/87] python3-platformdirs-0:4.2.2-2. 100% | 4.5 MiB/s | 41.6 KiB | 00m00s [62/87] tk-1:8.6.14-2.fc41.x86_64 100% | 33.5 MiB/s | 1.6 MiB | 00m00s [63/87] tcl-1:8.6.14-2.fc41.x86_64 100% | 16.7 MiB/s | 1.1 MiB | 00m00s [64/87] lcms2-0:2.16-4.fc41.x86_64 100% | 9.3 MiB/s | 180.3 KiB | 00m00s [65/87] libimagequant-0:4.0.3-5.fc41.x8 100% | 14.0 MiB/s | 301.2 KiB | 00m00s [66/87] libjpeg-turbo-0:3.0.2-3.fc41.x8 100% | 11.1 MiB/s | 227.3 KiB | 00m00s [67/87] libraqm-0:0.8.0-8.fc41.x86_64 100% | 1.1 MiB/s | 19.9 KiB | 00m00s [68/87] libtiff-0:4.6.0-6.fc42.x86_64 100% | 20.7 MiB/s | 212.0 KiB | 00m00s [69/87] python3-olefile-0:0.47-5.fc41.n 100% | 7.3 MiB/s | 75.1 KiB | 00m00s [70/87] libwebp-0:1.4.0-4.fc41.x86_64 100% | 13.6 MiB/s | 292.0 KiB | 00m00s [71/87] openjpeg-0:2.5.2-3.fc41.x86_64 100% | 10.1 MiB/s | 186.8 KiB | 00m00s [72/87] python3-pillow-tk-0:10.4.0-2.fc 100% | 3.8 MiB/s | 30.8 KiB | 00m00s [73/87] python3-matplotlib-data-fonts-0 100% | 66.4 MiB/s | 2.3 MiB | 00m00s [74/87] libxslt-0:1.1.42-3.fc41.x86_64 100% | 6.4 MiB/s | 189.4 KiB | 00m00s [75/87] python3-appdirs-0:1.4.4-24.fc42 100% | 889.4 KiB/s | 24.0 KiB | 00m00s [76/87] libXft-0:2.3.8-7.fc41.x86_64 100% | 3.9 MiB/s | 72.3 KiB | 00m00s [77/87] libXau-0:1.0.11-7.fc41.x86_64 100% | 1.7 MiB/s | 31.9 KiB | 00m00s [78/87] fribidi-0:1.0.15-2.fc41.x86_64 100% | 4.7 MiB/s | 92.2 KiB | 00m00s [79/87] default-fonts-core-sans-0:4.1-3 100% | 3.8 MiB/s | 31.0 KiB | 00m00s [80/87] xml-common-0:0.6.3-65.fc41.noar 100% | 1.7 MiB/s | 31.2 KiB | 00m00s [81/87] jbigkit-libs-0:2.1-30.fc41.x86_ 100% | 3.1 MiB/s | 53.3 KiB | 00m00s [82/87] liblerc-0:4.0.0-7.fc41.x86_64 100% | 8.2 MiB/s | 210.3 KiB | 00m00s [83/87] abattis-cantarell-vf-fonts-0:0. 100% | 2.4 MiB/s | 120.2 KiB | 00m00s [84/87] google-noto-sans-vf-fonts-0:202 100% | 19.3 MiB/s | 593.9 KiB | 00m00s [85/87] openblas-openmp-0:0.3.26-5.fc41 100% | 63.3 MiB/s | 5.1 MiB | 00m00s [86/87] google-noto-fonts-common-0:2024 100% | 2.2 MiB/s | 17.8 KiB | 00m00s [87/87] openblas-0:0.3.26-5.fc41.x86_64 100% | 2.2 MiB/s | 38.7 KiB | 00m00s -------------------------------------------------------------------------------- [87/87] Total 100% | 67.5 MiB/s | 84.6 MiB | 00m01s Running transaction [ 1/89] Verify package files 100% | 254.0 B/s | 87.0 B | 00m00s [ 2/89] Prepare transaction 100% | 664.0 B/s | 87.0 B | 00m00s [ 3/89] Installing fonts-filesystem-1:2 100% | 769.5 KiB/s | 788.0 B | 00m00s [ 4/89] Installing libgfortran-0:14.2.1 100% | 304.4 MiB/s | 3.0 MiB | 00m00s [ 5/89] Installing python3-matplotlib-d 100% | 263.7 MiB/s | 7.9 MiB | 00m00s [ 6/89] Installing python3-matplotlib-d 100% | 105.9 MiB/s | 758.7 KiB | 00m00s [ 7/89] Installing libwebp-0:1.4.0-4.fc 100% | 161.5 MiB/s | 826.8 KiB | 00m00s [ 8/89] Installing libjpeg-turbo-0:3.0. 100% | 190.1 MiB/s | 778.7 KiB | 00m00s [ 9/89] Installing tcl-1:8.6.14-2.fc41. 100% | 183.7 MiB/s | 4.2 MiB | 00m00s [10/89] Installing libpng-2:1.6.40-4.fc 100% | 120.6 MiB/s | 247.1 KiB | 00m00s [11/89] Installing python3-six-0:1.16.0 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [12/89] Installing python3-dateutil-1:2 100% | 124.6 MiB/s | 892.9 KiB | 00m00s [13/89] Installing python3-idna-0:3.8-1 100% | 147.1 MiB/s | 602.7 KiB | 00m00s [14/89] Installing python3-urllib3-0:1. 100% | 100.3 MiB/s | 1.0 MiB | 00m00s [15/89] Installing dejavu-sans-fonts-0: 100% | 324.0 MiB/s | 5.5 MiB | 00m00s [16/89] Installing abattis-cantarell-vf 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [17/89] Installing openblas-0:0.3.26-5. 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [18/89] Installing openblas-openmp-0:0. 100% | 474.3 MiB/s | 39.4 MiB | 00m00s [19/89] Installing google-noto-fonts-co 100% | 17.8 MiB/s | 18.3 KiB | 00m00s [20/89] Installing google-noto-sans-vf- 100% | 249.8 MiB/s | 1.2 MiB | 00m00s [21/89] Installing default-fonts-core-s 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [22/89] Installing nettle-0:3.10-3.fc41 100% | 194.4 MiB/s | 796.1 KiB | 00m00s [23/89] Installing gnutls-0:3.8.7-2.fc4 100% | 231.2 MiB/s | 3.2 MiB | 00m00s [24/89] Installing glib2-0:2.82.0-1.fc4 100% | 272.0 MiB/s | 14.7 MiB | 00m00s [25/89] Installing liblerc-0:4.0.0-7.fc 100% | 198.3 MiB/s | 609.0 KiB | 00m00s [26/89] Installing jbigkit-libs-0:2.1-3 100% | 116.8 MiB/s | 119.6 KiB | 00m00s [27/89] Installing libtiff-0:4.6.0-6.fc 100% | 34.9 MiB/s | 608.2 KiB | 00m00s >>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch >>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch [28/89] Installing xml-common-0:0.6.3-6 100% | 39.6 MiB/s | 81.1 KiB | 00m00s [29/89] Installing fribidi-0:1.0.15-2.f 100% | 181.1 MiB/s | 370.9 KiB | 00m00s [30/89] Installing libXau-0:1.0.11-7.fc 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [31/89] Installing libxcb-0:1.17.0-2.fc 100% | 124.1 MiB/s | 1.1 MiB | 00m00s [32/89] Installing python3-appdirs-0:1. 100% | 69.2 MiB/s | 70.9 KiB | 00m00s [33/89] Installing python3-fs-0:2.4.16- 100% | 122.0 MiB/s | 1.3 MiB | 00m00s [34/89] Installing libxslt-0:1.1.42-3.f 100% | 118.7 MiB/s | 486.1 KiB | 00m00s [35/89] Installing python3-lxml-0:5.3.0 100% | 206.9 MiB/s | 5.0 MiB | 00m00s [36/89] Installing python3-olefile-0:0. 100% | 111.9 MiB/s | 343.6 KiB | 00m00s [37/89] Installing openjpeg-0:2.5.2-3.f 100% | 145.7 MiB/s | 447.7 KiB | 00m00s [38/89] Installing libimagequant-0:4.0. 100% | 163.2 MiB/s | 668.3 KiB | 00m00s [39/89] Installing lcms2-0:2.16-4.fc41. 100% | 208.3 MiB/s | 426.5 KiB | 00m00s [40/89] Installing python3-platformdirs 100% | 85.5 MiB/s | 175.0 KiB | 00m00s [41/89] Installing graphite2-0:1.3.14-1 100% | 94.8 MiB/s | 194.1 KiB | 00m00s [42/89] Installing harfbuzz-0:9.0.0-3.f 100% | 265.0 MiB/s | 2.7 MiB | 00m00s [43/89] Installing freetype-0:2.13.2-6. 100% | 208.1 MiB/s | 852.3 KiB | 00m00s [44/89] Installing fontconfig-0:2.15.0- 100% | 772.5 KiB/s | 811.1 KiB | 00m01s >>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 [45/89] Installing libraqm-0:0.8.0-8.fc 100% | 9.7 MiB/s | 29.7 KiB | 00m00s [46/89] Installing python3-pillow-0:10. 100% | 155.7 MiB/s | 3.7 MiB | 00m00s [47/89] Installing pixman-0:0.43.4-2.fc 100% | 175.6 MiB/s | 719.2 KiB | 00m00s [48/89] Installing libX11-common-0:1.8. 100% | 66.0 MiB/s | 1.2 MiB | 00m00s [49/89] Installing libX11-0:1.8.10-2.fc 100% | 257.1 MiB/s | 1.3 MiB | 00m00s [50/89] Installing libXrender-0:0.9.11- 100% | 50.2 MiB/s | 51.4 KiB | 00m00s [51/89] Installing libXft-0:2.3.8-7.fc4 100% | 10.8 MiB/s | 166.0 KiB | 00m00s >>> Running pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64 >>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64 [52/89] Installing tk-1:8.6.14-2.fc41.x 100% | 146.4 MiB/s | 3.7 MiB | 00m00s [53/89] Installing python3-tkinter-0:3. 100% | 164.9 MiB/s | 2.0 MiB | 00m00s [54/89] Installing python3-pillow-tk-0: 100% | 68.4 MiB/s | 70.1 KiB | 00m00s [55/89] Installing libXext-0:1.3.6-2.fc 100% | 44.6 MiB/s | 91.3 KiB | 00m00s [56/89] Installing cairo-0:1.18.0-4.fc4 100% | 193.7 MiB/s | 1.7 MiB | 00m00s [57/89] Installing python3-cairo-0:1.25 100% | 121.2 MiB/s | 496.6 KiB | 00m00s [58/89] Installing m4-0:1.4.19-10.fc41. 100% | 97.5 MiB/s | 599.2 KiB | 00m00s [59/89] Installing flex-0:2.6.4-18.fc41 100% | 113.2 MiB/s | 811.4 KiB | 00m00s [60/89] Installing libquadmath-0:14.2.1 100% | 159.8 MiB/s | 327.2 KiB | 00m00s [61/89] Installing flexiblas-0:3.4.4-3. 100% | 48.5 MiB/s | 49.7 KiB | 00m00s [62/89] Installing flexiblas-openblas-o 100% | 43.1 MiB/s | 44.1 KiB | 00m00s [63/89] Installing flexiblas-netlib-0:3 100% | 288.2 MiB/s | 10.7 MiB | 00m00s [64/89] Installing python3-numpy-1:1.26 100% | 262.7 MiB/s | 44.1 MiB | 00m00s [65/89] Installing python3-numexpr-0:2. 100% | 113.8 MiB/s | 582.9 KiB | 00m00s [66/89] Installing python3-contourpy-0: 100% | 114.6 MiB/s | 821.2 KiB | 00m00s [67/89] Installing python3-numpy-f2py-1 100% | 123.3 MiB/s | 2.8 MiB | 00m00s [68/89] Installing python3-brotli-0:1.1 100% | 163.8 MiB/s | 838.5 KiB | 00m00s [69/89] Installing python3-pyparsing-0: 100% | 164.8 MiB/s | 1.0 MiB | 00m00s [70/89] Installing python3-kiwisolver-0 100% | 51.4 MiB/s | 157.8 KiB | 00m00s [71/89] Installing python3-cycler-0:0.1 100% | 38.9 MiB/s | 39.8 KiB | 00m00s [72/89] Installing libqhull_r-1:8.0.2-5 100% | 236.4 MiB/s | 484.2 KiB | 00m00s [73/89] Installing python3-pytz-0:2024. 100% | 74.6 MiB/s | 229.0 KiB | 00m00s [74/89] Installing python3-iniconfig-0: 100% | 11.5 MiB/s | 23.6 KiB | 00m00s [75/89] Installing libyaml-0:0.2.5-15.f 100% | 132.6 MiB/s | 135.8 KiB | 00m00s [76/89] Installing python3-charset-norm 100% | 79.3 MiB/s | 324.7 KiB | 00m00s [77/89] Installing python3-requests-0:2 100% | 97.3 MiB/s | 498.0 KiB | 00m00s [78/89] Installing python3-pooch-0:1.8. 100% | 69.5 MiB/s | 640.5 KiB | 00m00s [79/89] Installing python3-scipy-0:1.11 100% | 232.0 MiB/s | 62.9 MiB | 00m00s [80/89] Installing python3-Bottleneck-0 100% | 58.6 MiB/s | 659.7 KiB | 00m00s [81/89] Installing python3-fonttools-0: 100% | 194.0 MiB/s | 18.4 MiB | 00m00s [82/89] Installing python3-matplotlib-t 100% | 51.8 MiB/s | 265.3 KiB | 00m00s [83/89] Installing python3-matplotlib-0 100% | 193.9 MiB/s | 21.3 MiB | 00m00s [84/89] Installing python3-pandas-0:2.2 100% | 230.6 MiB/s | 42.2 MiB | 00m00s [85/89] Installing python3-pybbi-0:0.4. 100% | 170.4 MiB/s | 1.9 MiB | 00m00s [86/89] Installing python3-pyyaml-0:6.0 100% | 87.3 MiB/s | 804.9 KiB | 00m00s [87/89] Installing python3-pytest-0:8.3 100% | 222.5 MiB/s | 20.9 MiB | 00m00s [88/89] Installing python3-biopython-0: 100% | 183.8 MiB/s | 30.3 MiB | 00m00s [89/89] Installing python3-pysam-0:0.22 100% | 31.3 MiB/s | 7.0 MiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Warning: skipped PGP checks for 76 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Rq9abB + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd bioframe-0.7.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires -x dev Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.25.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: matplotlib (installed: matplotlib 3.9.1) Handling numpy<2,>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: numpy<2,>=1.10 (installed: numpy 1.26.4) Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pandas>=1.3 (installed: pandas 2.2.1) Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: requests (installed: requests 2.32.3) Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: biopython; extra == 'dev' (installed: biopython 1.84) Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pybbi; extra == 'dev' (installed: pybbi 0.4.0) Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pysam; extra == 'dev' (installed: pysam 0.22.1) Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pytest; extra == 'dev' (installed: pytest 8.3.1) Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.7.2.dist-info/ removed 'bioframe-0.7.2.dist-info/METADATA' removed directory 'bioframe-0.7.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 923.9 KiB/s | 26.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.7 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 36.6 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.14.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0~rc2-1.fc42.x86_64" is already installed. Package "python3-biopython-1.84-3.fc41.x86_64" is already installed. Package "python3-hatch-vcs-0.4.0-6.fc41.noarch" is already installed. Package "python3-hatchling-1.25.0-1.fc41.noarch" is already installed. Package "python3-matplotlib-3.9.1-2.fc41.x86_64" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Package "python3-pybbi-0.4.0-3.fc41.x86_64" is already installed. Package "python3-pysam-0.22.1-2.fc41.x86_64" is already installed. Package "python3-pytest-8.3.1-5.fc42.noarch" is already installed. Package "python3-pyyaml-6.0.1-18.fc41.x86_64" is already installed. Package "python3-requests-2.32.3-3.fc41.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.sGcjek + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd bioframe-0.7.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires -x dev Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.25.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: matplotlib (installed: matplotlib 3.9.1) Handling numpy<2,>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: numpy<2,>=1.10 (installed: numpy 1.26.4) Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pandas>=1.3 (installed: pandas 2.2.1) Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: requests (installed: requests 2.32.3) Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: biopython; extra == 'dev' (installed: biopython 1.84) Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pybbi; extra == 'dev' (installed: pybbi 0.4.0) Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pysam; extra == 'dev' (installed: pysam 0.22.1) Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pytest; extra == 'dev' (installed: pytest 8.3.1) Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.7.2.dist-info/ removed 'bioframe-0.7.2.dist-info/METADATA' removed directory 'bioframe-0.7.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ckzLEV + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.7.2 + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir Processing /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: bioframe Building wheel for bioframe (pyproject.toml): started Running command Building wheel for bioframe (pyproject.toml) Building wheel for bioframe (pyproject.toml): finished with status 'done' Created wheel for bioframe: filename=bioframe-0.7.2-py2.py3-none-any.whl size=150136 sha256=896bc1bb5c3c3725e96de04b2adcd5c3c146d56b3792715cb8fea2a0f2bc247f Stored in directory: /builddir/.cache/pip/wheels/5d/a8/60/6a64a2231b29479330b4a8baa2a29c5e106f0da75ee579e27d Successfully built bioframe + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.EoxylY + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + '[' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build + mkdir /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.7.2 ++ ls /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir/bioframe-0.7.2-py2.py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=bioframe==0.7.2 + '[' -z bioframe==0.7.2 ']' + TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir bioframe==0.7.2 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir Processing ./pyproject-wheeldir/bioframe-0.7.2-py2.py3-none-any.whl Installing collected packages: bioframe Successfully installed bioframe-0.7.2 + '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --record /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD removed '/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/REQUESTED removed '/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-record --prefix /usr -l bioframe + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/construction.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/specs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/arrops.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/stringops.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/checks.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/checks.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/assembly.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/bed.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/fileops.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/fileops.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/resources.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/schemas.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/clients.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/gtf_io.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/parquet_io.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/vis.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/extras.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/ops.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/ops.cpython-313.pyc: replacing with normalized version Scanned 16 directories and 79 files, processed 22 inodes, 22 modified (6 replaced + 16 rewritten), 0 unsupported format, 0 errors Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.nOGQ0g + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.7.2 + '[' '!' -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-3.fc42.x86_64-pyproject-modules Check import: bioframe Check import: bioframe.core Check import: bioframe.core.arrops Check import: bioframe.core.checks Check import: bioframe.core.construction Check import: bioframe.core.specs Check import: bioframe.core.stringops Check import: bioframe.extras Check import: bioframe.io Check import: bioframe.io.assembly Check import: bioframe.io.bed Check import: bioframe.io.fileops Check import: bioframe.io.resources Check import: bioframe.io.schemas Check import: bioframe.ops Check import: bioframe.sandbox Check import: bioframe.sandbox.clients Check import: bioframe.sandbox.gtf_io Check import: bioframe.sandbox.parquet_io Check import: bioframe.vis + k='not test_fetch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_fetch' ============================= test session starts ============================== platform linux -- Python 3.13.0rc2, pytest-8.3.1, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2 configfile: pyproject.toml collecting ... collected 73 items / 3 deselected / 70 selected tests/test_assembly_info.py::test_assemblies_available PASSED [ 1%] tests/test_assembly_info.py::test_assembly_info PASSED [ 2%] tests/test_bed.py::test_involution PASSED [ 4%] tests/test_bed.py::test_chrom_validators PASSED [ 5%] tests/test_bed.py::test_end_validators PASSED [ 7%] tests/test_bed.py::test_name_validators PASSED [ 8%] tests/test_bed.py::test_score_validators PASSED [ 10%] tests/test_bed.py::test_strand_validators PASSED [ 11%] tests/test_bed.py::test_thick_validators PASSED [ 12%] tests/test_bed.py::test_itemRgb_validators PASSED [ 14%] tests/test_bed.py::test_blockCount_validators PASSED [ 15%] tests/test_bed.py::test_blockSizes_validators PASSED [ 17%] tests/test_bed.py::test_blockStarts_validators PASSED [ 18%] tests/test_core_checks.py::test_is_cataloged PASSED [ 20%] tests/test_core_checks.py::test_is_contained PASSED [ 21%] tests/test_core_checks.py::test_is_overlapping PASSED [ 22%] tests/test_core_checks.py::test_is_covering PASSED [ 24%] tests/test_core_checks.py::test_is_tiling PASSED [ 25%] tests/test_core_checks.py::test_is_bedframe PASSED [ 27%] tests/test_core_checks.py::test_is_viewframe PASSED [ 28%] tests/test_core_checks.py::test_is_sorted PASSED [ 30%] tests/test_core_construction.py::test_add_ucsc_name_column PASSED [ 31%] tests/test_core_construction.py::test_any PASSED [ 32%] tests/test_core_construction.py::test_sanitize_bedframe PASSED [ 34%] tests/test_core_construction.py::test_make_viewframe PASSED [ 35%] tests/test_core_specs.py::test_get_default_colnames PASSED [ 37%] tests/test_core_specs.py::test_update_default_colnames PASSED [ 38%] tests/test_core_specs.py::test_verify_columns PASSED [ 40%] tests/test_core_specs.py::test_verify_column_dtypes PASSED [ 41%] tests/test_core_specs.py::test_is_chrom_dtype PASSED [ 42%] tests/test_core_stringops.py::test_to_ucsc_string PASSED [ 44%] tests/test_core_stringops.py::test_parse_region PASSED [ 45%] tests/test_core_stringops.py::test_parse_region_string PASSED [ 47%] tests/test_core_stringops.py::test_is_complete_ucsc_string PASSED [ 48%] tests/test_extras.py::test_make_chromarms PASSED [ 50%] tests/test_extras.py::test_binnify PASSED [ 51%] tests/test_extras.py::test_digest PASSED [ 52%] tests/test_extras.py::test_frac_mapped PASSED [ 54%] tests/test_extras.py::test_frac_gc PASSED [ 55%] tests/test_extras.py::test_seq_gc PASSED [ 57%] tests/test_extras.py::test_pair_by_distance PASSED [ 58%] tests/test_fileops.py::test_read_table PASSED [ 60%] tests/test_fileops.py::test_read_chromsizes PASSED [ 61%] tests/test_fileops.py::test_read_beds PASSED [ 62%] tests/test_fileops.py::test_read_sam PASSED [ 64%] tests/test_fileops.py::test_read_bam PASSED [ 65%] tests/test_ops.py::test_trim PASSED [ 67%] tests/test_ops.py::test_expand PASSED [ 68%] tests/test_ops.py::test_expand_amount_args PASSED [ 70%] tests/test_ops.py::test_overlap PASSED [ 71%] tests/test_ops.py::test_overlap_preserves_coord_dtypes PASSED [ 72%] tests/test_ops.py::test_overlap_ensure_int PASSED [ 74%] tests/test_ops.py::test_cluster PASSED [ 75%] tests/test_ops.py::test_merge PASSED [ 77%] tests/test_ops.py::test_complement PASSED [ 78%] tests/test_ops.py::test_closest PASSED [ 80%] tests/test_ops.py::test_coverage PASSED [ 81%] tests/test_ops.py::test_subtract PASSED [ 82%] tests/test_ops.py::test_setdiff PASSED [ 84%] tests/test_ops.py::test_count_overlaps PASSED [ 85%] tests/test_ops.py::test_assign_view PASSED [ 87%] tests/test_ops.py::test_sort_bedframe PASSED [ 88%] tests/test_ops_select.py::test_select PASSED [ 90%] tests/test_ops_select.py::test_select__with_colnames PASSED [ 91%] tests/test_ops_select.py::test_select__with_nulls PASSED [ 92%] tests/test_ops_select.py::test_select__mask_indices_labels PASSED [ 94%] tests/test_ops_select.py::test_select__query_intervals_are_half_open PASSED [ 95%] tests/test_ops_select.py::test_select__with_point_intervals PASSED [ 97%] tests/test_ops_select.py::test_select__with_points PASSED [ 98%] tests/test_vis.py::test_to_ucsc_colorstring PASSED [100%] ======================= 70 passed, 3 deselected in 3.43s ======================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-bioframe-0.7.2-3.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.30Vj6e + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + cd bioframe-0.7.2 + DOCDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/README.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CONTRIBUTING.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CITATION.cff /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CHANGES.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bioframe = 0.7.2-3.fc42 python3-bioframe = 0.7.2-3.fc42 python3.13-bioframe = 0.7.2-3.fc42 python3.13dist(bioframe) = 0.7.2 python3dist(bioframe) = 0.7.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.13dist(numpy) < 2~~ with python3.13dist(numpy) >= 1.10) python(abi) = 3.13 python3.13dist(matplotlib) python3.13dist(pandas) >= 1.3 python3.13dist(pyyaml) python3.13dist(requests) Recommends: python3dist(biopython) python3dist(pybbi) python3dist(pysam) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-3.fc42.src.rpm Wrote: /builddir/build/RPMS/python3-bioframe-0.7.2-3.fc42.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.4Bjkav + umask 022 + cd /builddir/build/BUILD/python-bioframe-0.7.2-build + test -d /builddir/build/BUILD/python-bioframe-0.7.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-bioframe-0.7.2-build + rm -rf /builddir/build/BUILD/python-bioframe-0.7.2-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-bioframe-0.7.2-3.fc42.src.rpm Finish: build phase for python-bioframe-0.7.2-3.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725738522.569121/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/python-bioframe-0.7.2-3.fc42.src.rpm) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-bioframe", "epoch": null, "version": "0.7.2", "release": "3.fc42", "arch": "src" }, { "name": "python3-bioframe", "epoch": null, "version": "0.7.2", "release": "3.fc42", "arch": "noarch" } ] } RPMResults finished