Warning: Permanently added '54.172.122.75' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7993685-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 58739 Logging PID: 58740 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 7993685, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '98c6c255bd83e17edbddd887c8ce34c169d575cd', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/libsonata', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsonata', 'package_version': '0.1.23-10', 'project_dirname': 'python3.13', 'project_name': 'python3.13', 'project_owner': '@python', 'repo_priority': 9, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.13/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': 9}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f41-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch'}], 'sandbox': '@python/python3.13--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '7993685-fedora-rawhide-x86_64', 'timeout': None, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/libsonata /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/libsonata', '/var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata'... Running: git checkout 98c6c255bd83e17edbddd887c8ce34c169d575cd -- cmd: ['git', 'checkout', '98c6c255bd83e17edbddd887c8ce34c169d575cd', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata rc: 0 stdout: stderr: Note: switching to '98c6c255bd83e17edbddd887c8ce34c169d575cd'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 98c6c25 automatic import of libsonata Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsonata-0.1.23.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o libsonata-0.1.23.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.13/libsonata/libsonata-0.1.23.tar.gz/md5/4a2f0917fd2882f707e2b2e92e40f85b/libsonata-0.1.23.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 624k 100 624k 0 0 13.1M 0 --:--:-- --:--:-- --:--:-- 13.2M INFO: Reading stdout from command: md5sum libsonata-0.1.23.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=None): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725745786.331865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725745786.331865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata/libsonata.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725745786.331865/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 237.1 KiB/s | 26.8 KiB | 00m00s Copr repository 100% | 64.1 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 116.1 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 175.3 MiB/s | 12.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 95.7 KiB coreutils x86_64 9.5-9.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 MiB diffutils x86_64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.6 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB gawk x86_64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B grep x86_64 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.0 MiB gzip x86_64 1.13-2.fc41 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1.6.1-6.fc42 fedora 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.93-1.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 copr_base 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 copr_base 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. 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Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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00m00s [131/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [132/155] Installing libcurl-0:8.9.1-3. 100% | 266.7 MiB/s | 819.2 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 210.9 MiB/s | 648.0 KiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [135/155] Installing binutils-0:2.43.1- 100% | 312.9 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [136/155] Installing elfutils-0:0.191-8 100% | 284.5 MiB/s | 2.6 MiB | 00m00s [137/155] Installing gdb-minimal-0:15.1 100% | 309.3 MiB/s | 13.0 MiB | 00m00s [138/155] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [139/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 60.0 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 147.1 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 94.2 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 99.0 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 137.6 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 77.1 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 346.9 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 122 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc42.x86_64 file-libs-5.45-7.fc42.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc42.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc42.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-3.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc42.x86_64 libgomp-14.2.1-1.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-10.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1725745786.331865/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725745786.331865/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vw2vp9jt/libsonata/libsonata.spec) Config(child) 0 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-10.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725745786.331865/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for libsonata-0.1.23-10.fc42.src.rpm Start: build setup for libsonata-0.1.23-10.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-10.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 77.0 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 182.4 KiB/s | 3.8 KiB | 00m00s fedora 100% | 893.0 KiB/s | 26.8 KiB | 00m00s Copr repository 100% | 81.7 MiB/s | 12.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc42 copr_base 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 952.8 KiB cmake x86_64 3.28.3-7.fc41 copr_base 31.6 MiB fmt-devel x86_64 11.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 575.2 KiB gcc-c++ x86_64 14.2.1-1.fc42 fedora 38.2 MiB git-core x86_64 2.46.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 22.1 MiB hdf5-devel x86_64 1.12.1-20.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 3.9 MiB highfive-devel x86_64 2.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 377.0 KiB json-devel x86_64 3.11.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.0 MiB pybind11-devel x86_64 2.13.1-3.fc41 copr_base 846.0 KiB python3-devel x86_64 3.13.0~rc2-1.fc42 copr_base 1.8 MiB python3-h5py x86_64 3.11.0-3.fc41 copr_base 4.4 MiB python3-pip noarch 24.2-1.fc41 copr_base 11.4 MiB python3-pybind11 x86_64 2.13.1-3.fc41 copr_base 887.0 KiB python3-pytest noarch 8.3.1-5.fc42 copr_base 20.8 MiB python3-setuptools noarch 69.2.0-8.fc41 copr_base 7.2 MiB python3-setuptools_scm noarch 8.0.4-6.fc41 copr_base 310.7 KiB python3-wheel noarch 1:0.43.0-4.fc41 copr_base 516.1 KiB Installing dependencies: annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 fedora 985.6 KiB boost x86_64 1.83.0-8.fc42 copr_base 1.3 KiB boost-atomic x86_64 1.83.0-8.fc42 copr_base 24.9 KiB boost-chrono x86_64 1.83.0-8.fc42 copr_base 41.6 KiB boost-container x86_64 1.83.0-8.fc42 copr_base 69.5 KiB boost-context x86_64 1.83.0-8.fc42 copr_base 16.5 KiB boost-contract x86_64 1.83.0-8.fc42 copr_base 103.2 KiB boost-coroutine x86_64 1.83.0-8.fc42 copr_base 25.1 KiB boost-date-time x86_64 1.83.0-8.fc42 copr_base 16.3 KiB boost-fiber x86_64 1.83.0-8.fc42 copr_base 82.8 KiB boost-filesystem x86_64 1.83.0-8.fc42 copr_base 147.6 KiB boost-graph x86_64 1.83.0-8.fc42 copr_base 346.3 KiB boost-iostreams x86_64 1.83.0-8.fc42 copr_base 94.7 KiB boost-json x86_64 1.83.0-8.fc42 copr_base 329.1 KiB boost-locale x86_64 1.83.0-8.fc42 copr_base 606.2 KiB boost-log x86_64 1.83.0-8.fc42 copr_base 1.5 MiB boost-math x86_64 1.83.0-8.fc42 copr_base 662.9 KiB boost-nowide x86_64 1.83.0-8.fc42 copr_base 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc42 copr_base 57.6 KiB boost-program-options x86_64 1.83.0-8.fc42 copr_base 272.7 KiB boost-python3 x86_64 1.83.0-8.fc42 copr_base 254.4 KiB boost-random x86_64 1.83.0-8.fc42 copr_base 33.7 KiB boost-regex x86_64 1.83.0-8.fc42 copr_base 275.0 KiB boost-serialization x86_64 1.83.0-8.fc42 copr_base 441.6 KiB boost-stacktrace x86_64 1.83.0-8.fc42 copr_base 68.1 KiB boost-system x86_64 1.83.0-8.fc42 copr_base 16.3 KiB boost-test x86_64 1.83.0-8.fc42 copr_base 643.0 KiB boost-thread x86_64 1.83.0-8.fc42 copr_base 136.8 KiB boost-timer x86_64 1.83.0-8.fc42 copr_base 25.1 KiB boost-type_erasure x86_64 1.83.0-8.fc42 copr_base 58.2 KiB boost-wave x86_64 1.83.0-8.fc42 copr_base 639.8 KiB cmake-data noarch 3.28.3-7.fc41 copr_base 8.0 MiB cmake-filesystem x86_64 3.28.3-7.fc41 copr_base 0.0 B cmake-rpm-macros noarch 3.28.3-7.fc41 copr_base 7.5 KiB cpp x86_64 14.2.1-1.fc42 fedora 35.0 MiB emacs-filesystem noarch 1:30.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B expat x86_64 2.6.3-1.fc42 fedora 291.5 KiB flexiblas x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 43.3 KiB fmt x86_64 11.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 264.1 KiB gcc x86_64 14.2.1-1.fc42 fedora 104.1 MiB gcc-gfortran x86_64 14.2.1-1.fc42 fedora 37.2 MiB 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1.5.2-17.fc42 copr_base 37.5 KiB python3-iniconfig noarch 1.1.1-24.fc42 copr_base 20.6 KiB python3-libs x86_64 3.13.0~rc2-1.fc42 copr_base 40.3 MiB python3-numpy x86_64 1:1.26.4-8.fc41 copr_base 43.8 MiB python3-packaging noarch 24.1-2.fc41 copr_base 422.3 KiB python3-pluggy noarch 1.5.0-1.fc42 copr_base 193.2 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 6.4 KiB python3-six noarch 1.16.0-24.fc42 copr_base 118.3 KiB python3-typing-extensions noarch 4.12.2-3.fc41 copr_base 464.5 KiB rhash x86_64 1.4.4-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 349.9 KiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB vim-filesystem noarch 2:9.1.703-1.fc42 fedora 40.0 B zlib-ng-compat-devel x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 106.8 KiB Transaction Summary: Installing: 109 packages Total size of inbound packages is 168 MiB. Need to download 71 MiB. After this operation 706 MiB will be used (install 706 MiB, remove 0 B). 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00m00s [108/109] openblas-0:0.3.26-5.fc41.x86_ 100% | 2.7 MiB/s | 38.7 KiB | 00m00s [109/109] openblas-openmp-0:0.3.26-5.fc 100% | 144.7 MiB/s | 5.1 MiB | 00m00s -------------------------------------------------------------------------------- [109/109] Total 100% | 155.3 MiB/s | 71.3 MiB | 00m00s Running transaction [ 1/111] Verify package files 100% | 184.0 B/s | 109.0 B | 00m01s [ 2/111] Prepare transaction 100% | 712.0 B/s | 109.0 B | 00m00s [ 3/111] Installing cmake-filesystem-0 100% | 3.5 MiB/s | 7.1 KiB | 00m00s [ 4/111] Installing boost-system-0:1.8 100% | 0.0 B/s | 17.3 KiB | 00m00s [ 5/111] Installing boost-chrono-0:1.8 100% | 41.6 MiB/s | 42.6 KiB | 00m00s [ 6/111] Installing boost-thread-0:1.8 100% | 134.5 MiB/s | 137.7 KiB | 00m00s [ 7/111] Installing libicu-0:74.2-2.fc 100% | 329.8 MiB/s | 35.0 MiB | 00m00s [ 8/111] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 9/111] Installing libgfortran-0:14.2 100% | 380.5 MiB/s | 3.0 MiB | 00m00s [ 10/111] Installing boost-regex-0:1.83 100% | 134.7 MiB/s | 275.8 KiB | 00m00s [ 11/111] Installing libquadmath-0:14.2 100% | 319.5 MiB/s | 327.2 KiB | 00m00s [ 12/111] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 13/111] Installing expat-0:2.6.3-1.fc 100% | 143.3 MiB/s | 293.6 KiB | 00m00s [ 14/111] Installing boost-context-0:1. 100% | 0.0 B/s | 17.5 KiB | 00m00s [ 15/111] Installing boost-atomic-0:1.8 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 16/111] Installing boost-filesystem-0 100% | 145.1 MiB/s | 148.6 KiB | 00m00s [ 17/111] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 18/111] Installing libaec-0:1.1.2-2.f 100% | 98.1 MiB/s | 100.5 KiB | 00m00s [ 19/111] Installing hdf5-0:1.12.1-20.f 100% | 322.8 MiB/s | 8.4 MiB | 00m00s [ 20/111] Installing make-1:4.4.1-8.fc4 100% | 200.0 MiB/s | 1.8 MiB | 00m00s [ 21/111] Installing libstdc++-devel-0: 100% | 324.0 MiB/s | 15.6 MiB | 00m00s [ 22/111] Installing boost-date-time-0: 100% | 0.0 B/s | 17.3 KiB | 00m00s [ 23/111] Installing boost-container-0: 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [ 24/111] Installing boost-json-0:1.83. 100% | 161.2 MiB/s | 330.1 KiB | 00m00s [ 25/111] Installing boost-wave-0:1.83. 100% | 208.6 MiB/s | 640.8 KiB | 00m00s [ 26/111] Installing libaec-devel-0:1.1 100% | 0.0 B/s | 12.9 KiB | 00m00s [ 27/111] Installing pyproject-rpm-macr 100% | 105.1 MiB/s | 107.7 KiB | 00m00s [ 28/111] Installing boost-fiber-0:1.83 100% | 81.8 MiB/s | 83.7 KiB | 00m00s [ 29/111] Installing boost-log-0:1.83.0 100% | 295.1 MiB/s | 1.5 MiB | 00m00s [ 30/111] Installing boost-coroutine-0: 100% | 25.5 MiB/s | 26.2 KiB | 00m00s [ 31/111] Installing boost-graph-0:1.83 100% | 169.6 MiB/s | 347.3 KiB | 00m00s [ 32/111] Installing cpp-0:14.2.1-1.fc4 100% | 299.1 MiB/s | 35.0 MiB | 00m00s [ 33/111] Installing boost-locale-0:1.8 100% | 197.7 MiB/s | 607.2 KiB | 00m00s [ 34/111] Installing libicu-devel-0:74. 100% | 256.4 MiB/s | 5.6 MiB | 00m00s [ 35/111] Installing boost-type_erasure 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [ 36/111] Installing boost-timer-0:1.83 100% | 25.5 MiB/s | 26.1 KiB | 00m00s [ 37/111] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 38/111] Installing openblas-0:0.3.26- 100% | 0.0 B/s | 97.8 KiB | 00m00s [ 39/111] Installing openblas-openmp-0: 100% | 492.1 MiB/s | 39.4 MiB | 00m00s [ 40/111] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s [ 41/111] Installing flexiblas-openblas 100% | 0.0 B/s | 44.1 KiB | 00m00s [ 42/111] Installing flexiblas-netlib-0 100% | 333.3 MiB/s | 10.7 MiB | 00m00s [ 43/111] Installing libcbor-0:0.11.0-2 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [ 44/111] Installing libfido2-0:1.15.0- 100% | 234.1 MiB/s | 239.7 KiB | 00m00s [ 45/111] Installing libedit-0:3.1-53.2 100% | 120.0 MiB/s | 245.8 KiB | 00m00s [ 46/111] Installing vim-filesystem-2:9 100% | 4.6 MiB/s | 4.7 KiB | 00m00s [ 47/111] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 48/111] Installing fmt-0:11.0.2-1.fc4 100% | 129.7 MiB/s | 265.6 KiB | 00m00s [ 49/111] Installing openssh-0:9.8p1-4. 100% | 296.4 MiB/s | 1.8 MiB | 00m00s [ 50/111] Installing openssh-clients-0: 100% | 162.5 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.8p1-4.fc42.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.8p1-4.fc42.x86_64 [ 51/111] Installing less-0:661-2.fc41. 100% | 66.5 MiB/s | 408.6 KiB | 00m00s [ 52/111] Installing kernel-headers-0:6 100% | 167.8 MiB/s | 6.5 MiB | 00m00s [ 53/111] Installing glibc-headers-x86- 100% | 163.3 MiB/s | 2.3 MiB | 00m00s [ 54/111] Installing libxcrypt-devel-0: 100% | 31.8 MiB/s | 32.6 KiB | 00m00s [ 55/111] Installing glibc-devel-0:2.40 100% | 12.5 MiB/s | 38.4 KiB | 00m00s [ 56/111] Installing gcc-0:14.2.1-1.fc4 100% | 330.8 MiB/s | 104.2 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [ 57/111] Installing libquadmath-devel- 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [ 58/111] Installing gcc-gfortran-0:14. 100% | 291.1 MiB/s | 37.3 MiB | 00m00s [ 59/111] Installing annobin-docs-0:12. 100% | 96.5 MiB/s | 98.8 KiB | 00m00s [ 60/111] Installing rhash-0:1.4.4-2.fc 100% | 173.4 MiB/s | 355.1 KiB | 00m00s [ 61/111] Installing libuv-1:1.48.0-2.f 100% | 268.4 MiB/s | 549.6 KiB | 00m00s [ 62/111] Installing jsoncpp-0:1.9.5-8. 100% | 124.5 MiB/s | 254.9 KiB | 00m00s [ 63/111] Installing liblzf-0:3.6-29.fc 100% | 18.3 MiB/s | 56.2 KiB | 00m00s [ 64/111] Installing tzdata-0:2024a-9.f 100% | 57.1 MiB/s | 1.9 MiB | 00m00s [ 65/111] Installing python-pip-wheel-0 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [ 66/111] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB | 00m00s [ 67/111] Installing libb2-0:0.98.1-12. 100% | 10.6 MiB/s | 43.3 KiB | 00m00s [ 68/111] Installing python3-libs-0:3.1 100% | 276.8 MiB/s | 40.7 MiB | 00m00s [ 69/111] Installing python3-0:3.13.0~r 100% | 32.8 MiB/s | 33.6 KiB | 00m00s [ 70/111] Installing python3-packaging- 100% | 141.0 MiB/s | 433.2 KiB | 00m00s [ 71/111] Installing boost-python3-0:1. 100% | 62.4 MiB/s | 255.4 KiB | 00m00s [ 72/111] Installing python3-numpy-1:1. 100% | 336.9 MiB/s | 44.1 MiB | 00m00s [ 73/111] Installing boost-numpy3-0:1.8 100% | 28.6 MiB/s | 58.6 KiB | 00m00s [ 74/111] Installing cmake-rpm-macros-0 100% | 1.6 MiB/s | 8.1 KiB | 00m00s [ 75/111] Installing cmake-data-0:3.28. 100% | 116.2 MiB/s | 8.5 MiB | 00m00s [ 76/111] Installing cmake-0:3.28.3-7.f 100% | 319.2 MiB/s | 31.6 MiB | 00m00s [ 77/111] Installing pybind11-devel-0:2 100% | 277.9 MiB/s | 853.9 KiB | 00m00s [ 78/111] Installing python3-rpm-genera 100% | 27.0 MiB/s | 82.9 KiB | 00m00s [ 79/111] Installing python3-pip-0:24.2 100% | 182.3 MiB/s | 11.7 MiB | 00m00s [ 80/111] Installing python3-setuptools 100% | 215.6 MiB/s | 7.3 MiB | 00m00s [ 81/111] Installing python3-typing-ext 100% | 228.0 MiB/s | 466.9 KiB | 00m00s [ 82/111] Installing python3-iniconfig- 100% | 23.0 MiB/s | 23.5 KiB | 00m00s [ 83/111] Installing python3-pluggy-0:1 100% | 97.4 MiB/s | 199.4 KiB | 00m00s [ 84/111] Installing python3-cached_pro 100% | 39.5 MiB/s | 40.5 KiB | 00m00s [ 85/111] Installing python3-six-0:1.16 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [ 86/111] Installing boost-test-0:1.83. 100% | 209.8 MiB/s | 644.5 KiB | 00m00s [ 87/111] Installing boost-stacktrace-0 100% | 68.4 MiB/s | 70.0 KiB | 00m00s [ 88/111] Installing boost-serializatio 100% | 216.4 MiB/s | 443.1 KiB | 00m00s [ 89/111] Installing boost-random-0:1.8 100% | 33.9 MiB/s | 34.7 KiB | 00m00s [ 90/111] Installing boost-program-opti 100% | 267.3 MiB/s | 273.7 KiB | 00m00s [ 91/111] Installing boost-nowide-0:1.8 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 92/111] Installing boost-math-0:1.83. 100% | 216.8 MiB/s | 665.9 KiB | 00m00s [ 93/111] Installing boost-iostreams-0: 100% | 93.5 MiB/s | 95.7 KiB | 00m00s [ 94/111] Installing boost-contract-0:1 100% | 101.7 MiB/s | 104.2 KiB | 00m00s [ 95/111] Installing boost-0:1.83.0-8.f 100% | 74.7 KiB/s | 1.7 KiB | 00m00s [ 96/111] Installing boost-devel-0:1.83 100% | 254.8 MiB/s | 145.8 MiB | 00m01s [ 97/111] Installing python3-h5py-0:3.1 100% | 258.1 MiB/s | 4.4 MiB | 00m00s [ 98/111] Installing python3-pytest-0:8 100% | 373.5 MiB/s | 20.9 MiB | 00m00s [ 99/111] Installing python3-setuptools 100% | 80.5 MiB/s | 329.8 KiB | 00m00s [100/111] Installing python3-devel-0:3. 100% | 165.0 MiB/s | 1.8 MiB | 00m00s [101/111] Installing python3-pybind11-0 100% | 176.0 MiB/s | 901.3 KiB | 00m00s [102/111] Installing python3-wheel-1:0. 100% | 104.5 MiB/s | 535.1 KiB | 00m00s [103/111] Installing annobin-plugin-gcc 100% | 53.6 MiB/s | 987.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [104/111] Installing hdf5-devel-0:1.12. 100% | 259.6 MiB/s | 3.9 MiB | 00m00s [105/111] Installing gcc-c++-0:14.2.1-1 100% | 293.6 MiB/s | 38.2 MiB | 00m00s [106/111] Installing gcc-plugin-annobin 100% | 3.6 MiB/s | 62.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [107/111] Installing git-core-0:2.46.0- 100% | 369.4 MiB/s | 22.2 MiB | 00m00s [108/111] Installing fmt-devel-0:11.0.2 100% | 282.4 MiB/s | 578.4 KiB | 00m00s [109/111] Installing json-devel-0:3.11. 100% | 250.4 MiB/s | 1.0 MiB | 00m00s [110/111] Installing catch2-devel-0:2.1 100% | 234.6 MiB/s | 960.8 KiB | 00m00s [111/111] Installing highfive-devel-0:2 100% | 1.8 MiB/s | 389.5 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 93 package(s). Finish: build setup for libsonata-0.1.23-10.fc42.src.rpm Start: rpmbuild libsonata-0.1.23-10.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721260800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.fZkgdB + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + test -d /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/rm -rf /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.f4cWLj + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd /builddir/build/BUILD/libsonata-0.1.23-build + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-adapt-to-fmt-11.patch + /usr/bin/git apply --index --reject - Checking patch src/node_sets.cpp... Applied patch src/node_sets.cpp cleanly. + GIT_COMMITTER_DATE=@1721260800 + GIT_AUTHOR_DATE=@1721260800 + /usr/bin/git commit -q -m 0006-adapt-to-fmt-11.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.h0BD7K + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:202 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.1") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp [ 17%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o [ 17%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp [ 20%] Building CXX object CMakeFiles/sonata_shared.dir/src/edges.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp [ 23%] Building CXX object CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp [ 26%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp [ 29%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp [ 32%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp [ 35%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp [ 38%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp [ 41%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp [ 44%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 47%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp [ 52%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp [ 58%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so [ 61%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp [ 67%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 70%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 70%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 76%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o [ 76%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/main.cpp cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_edges.cpp /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 79%] Built target sonata_static /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 82%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_0()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:51:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 51 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:3: /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_5()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:391:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:430:46: required from here 430 | return Selection::fromValues(raw.data(0), raw.data(raw.shape(0))); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_nodes.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_selection.cpp [ 97%] Linking CXX shared module _libsonata.cpython-313-x86_64-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-313-x86_64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-313-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [100%] Built target sonata_python cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running dist_info creating /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-o1k_8zsc/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/libsonata copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-313/libsonata running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/libsonata copying build/lib.linux-x86_64-cpython-313/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/libsonata-0.1.23-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-wheel-b000jmjk/.tmp-b82idyoc/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp313-cp313-linux_x86_64.whl size=8519 sha256=288b59d643242efa996d75d72caecc7d09bad66e76873abba84c53d980059ee7 Stored in directory: /builddir/.cache/pip/wheels/4c/00/f7/4a34f1c54e616a8baccb759d4c3d12096f209c7b5f68a68b5e Successfully built libsonata + popd + pushd tests/data + /usr/bin/python3 generate.py ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + mkdir -p redhat-linux-build/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.7hV9q6 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT ++ dirname /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + mkdir /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-313-x86_64-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=libsonata==0.1.23 + '[' -z libsonata==0.1.23 ']' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-10.fc42.x86_64-pyproject-record --prefix /usr -l libsonata + popd ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.1.23-10.fc42 --unique-debug-suffix -0.1.23-10.fc42.x86_64 --unique-debug-src-base libsonata-0.1.23-10.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-10.fc42.x86_64 1082 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 28 directories and 50 files, processed 1 inodes, 1 modified (0 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.djguze + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j4 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader Start 3: SomaReportReader limits Start 4: SomaReportReader 1/30 Test #1: Selection ....................................... Passed 0.01 sec Start 5: ElementReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 6: ElementReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec Start 7: NodePopulation 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 8: NodePopulationMove 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 9: NodePopulationSelectAll 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 7/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t 8/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec Start 19: NodeSetParse 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec Start 20: NodeSetBasic 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec Start 21: NodeSetCompound 18/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 22: NodeSet 19/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 23: EdgePopulation 20/30 Test #22: NodeSet ......................................... Passed 0.00 sec Start 24: EdgePopulationSelectAll 21/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 22/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 26: EdgeStorage 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec Start 27: CircuitConfig 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 28: SimulationConfig 25/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 29: SONATA 26/30 Test #26: EdgeStorage ..................................... Passed 0.01 sec Start 30: unittests 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec 28/30 Test #29: SONATA .......................................... Passed 0.00 sec 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.08 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + export PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.047s OK ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-10.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.LVxWZI + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ACjvQ0 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-10.fc42 libsonata(x86-64) = 0.1.23-10.fc42 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-10.fc42.x86_64 Provides: libsonata-devel = 0.1.23-10.fc42 libsonata-devel(x86-64) = 0.1.23-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.23-10.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.p0rGWP + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-10.fc42 python3-libsonata = 0.1.23-10.fc42 python3-libsonata(x86-64) = 0.1.23-10.fc42 python3.13-libsonata = 0.1.23-10.fc42 python3.13dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-10.fc42.x86_64 Provides: libsonata-debugsource = 0.1.23-10.fc42 libsonata-debugsource(x86-64) = 0.1.23-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-10.fc42.x86_64 Provides: debuginfo(build-id) = 751b397ff0b20d5462eff7baf93e1d6375084065 libsonata-debuginfo = 0.1.23-10.fc42 libsonata-debuginfo(x86-64) = 0.1.23-10.fc42 libsonata.so.0.1.23-0.1.23-10.fc42.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.23-10.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-10.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.yw2Njs + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + test -d /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.23-build + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.23-10.fc42.src.rpm Finish: build phase for libsonata-0.1.23-10.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725745786.331865/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-10.fc42.src.rpm) Config(child) 2 minutes 52 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-libsonata", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "x86_64" }, { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "x86_64" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "x86_64" }, { "name": "libsonata-devel", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "10.fc42", "arch": "src" } ] } RPMResults finished