Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18a' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7993853-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 6749 Logging PID: 6750 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 7993853, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '81625f4319442ad10a17cc7ddf9a5eaaee17a49b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/morphio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'morphio', 'package_version': '3.3.9-5', 'project_dirname': 'python3.13', 'project_name': 'python3.13', 'project_owner': '@python', 'repo_priority': 9, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.13/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': 9}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f41-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch'}], 'sandbox': '@python/python3.13--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '7993853-fedora-rawhide-x86_64', 'timeout': None, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/morphio /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.13/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio'... Running: git checkout 81625f4319442ad10a17cc7ddf9a5eaaee17a49b -- cmd: ['git', 'checkout', '81625f4319442ad10a17cc7ddf9a5eaaee17a49b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio rc: 0 stdout: stderr: Note: switching to '81625f4319442ad10a17cc7ddf9a5eaaee17a49b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 81625f4 automatic import of morphio Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD /usr/bin/tail: INFO: Reading sources specification file: sources INFO: Downloading MorphIO-3.3.9.tar.gz /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o MorphIO-3.3.9.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.13/morphio/MorphIO-3.3.9.tar.gz/md5/789314860fdd6941794dc69f51175da2/MorphIO-3.3.9.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3484k 100 3484k 0 0 19.2M 0 --:--:-- --:--:-- --:--:-- 19.3M INFO: Reading stdout from command: md5sum MorphIO-3.3.9.tar.gz Running (timeout=None): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725747260.530682 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725747260.530682 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio/morphio.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725747260.530682/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 16.6 MiB/s | 21.7 MiB | 00m01s Copr repository 100% | 52.1 MiB/s | 12.2 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 48.8 MiB/s | 14.2 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 95.7 KiB coreutils x86_64 9.5-9.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 MiB diffutils x86_64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.6 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB gawk x86_64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B grep x86_64 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.0 MiB gzip x86_64 1.13-2.fc41 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qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.93-1.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 copr_base 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 copr_base 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). 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Running transaction Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/155] Verify package files 100% | 735.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 [ 2/155] Prepare transaction 100% | 1.9 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 [ 4/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 5/155] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 7/155] Installing fedora-repos-0:42- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 8/155] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 9/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 10/155] Installing setup-0:2.15.0-5.f 100% | 54.5 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 11/155] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.5 KiB | 00m00s [ 12/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 13/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 14/155] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0 B | 00m00s [ 15/155] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 16/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 17/155] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 18/155] Installing glibc-0:2.40-3.fc4 100% | 130.9 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 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[109/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [110/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [111/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [112/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [113/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [114/155] Installing coreutils-common-0 100% | 260.2 MiB/s | 11.2 MiB | 00m00s [115/155] Installing openssl-libs-1:3.2 100% | 301.0 MiB/s | 7.8 MiB | 00m00s [116/155] Installing coreutils-0:9.5-9. 100% | 139.5 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [117/155] Installing ca-certificates-0: 100% | 2.5 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [118/155] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s | 2.3 MiB | 00m00s [119/155] Installing libarchive-0:3.7.4 100% | 180.6 MiB/s | 924.6 KiB | 00m00s [120/155] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [121/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [122/155] Installing authselect-libs-0: 100% | 81.4 MiB/s | 833.2 KiB | 00m00s [123/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [124/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [125/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [126/155] Installing pam-0:1.6.1-6.fc42 100% | 75.1 MiB/s | 1.9 MiB | 00m00s [127/155] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB | 00m00s [128/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [129/155] Installing rpm-libs-0:4.19.93 100% | 176.6 MiB/s | 723.4 KiB | 00m00s [130/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [131/155] Installing openldap-0:2.6.8-5 100% | 126.6 MiB/s | 648.0 KiB | 00m00s [132/155] Installing libcurl-0:8.9.1-3. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [133/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [134/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [135/155] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s | 2.6 MiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 264.8 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [137/155] Installing gdb-minimal-0:15.1 100% | 309.3 MiB/s | 13.0 MiB | 00m00s [138/155] Installing debugedit-0:5.0-17 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [139/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 37.1 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 89.3 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 84.4 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 51.4 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 278.0 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 122 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc42.x86_64 file-libs-5.45-7.fc42.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc42.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc42.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-3.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc42.x86_64 libgomp-14.2.1-1.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc42.x86_64 libsemanage-3.7-2.fc42.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc42.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Wrote: /builddir/build/SRPMS/morphio-3.3.9-5.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1725747260.530682/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725747260.530682/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-snuevs9d/morphio/morphio.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.3.9-5.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725747260.530682/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for morphio-3.3.9-5.fc42.src.rpm Start: build setup for morphio-3.3.9-5.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Wrote: /builddir/build/SRPMS/morphio-3.3.9-5.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 42.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 1.0 MiB/s | 26.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.3 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 48.3 MiB/s | 12.2 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc42 copr_base 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 952.8 KiB cmake x86_64 3.28.3-7.fc41 copr_base 31.6 MiB gcc-c++ x86_64 14.2.1-1.fc42 fedora 38.2 MiB gsl-lite-devel x86_64 0.41.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 308.1 KiB gulrak-filesystem-devel x86_64 1.5.14-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 272.2 KiB hdf5-devel x86_64 1.12.1-20.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 3.9 MiB highfive-devel x86_64 2.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 377.0 KiB lcov noarch 2.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 930.9 KiB lexertl14-devel x86_64 1:0.1.0^20240506gitbca1359-2.fc42 fedora 573.7 KiB ninja-build x86_64 1.12.1-3.fc42 copr_base 436.6 KiB pybind11-devel x86_64 2.13.1-3.fc41 copr_base 846.0 KiB python3-devel x86_64 3.13.0~rc2-1.fc42 copr_base 1.8 MiB python3-h5py x86_64 3.11.0-3.fc41 copr_base 4.4 MiB python3-numpy x86_64 1:1.26.4-8.fc41 copr_base 43.8 MiB python3-pytest noarch 8.3.1-5.fc42 copr_base 20.8 MiB python3-requests noarch 2.32.3-3.fc41 copr_base 485.9 KiB python3-setuptools noarch 69.2.0-8.fc41 copr_base 7.2 MiB python3-setuptools_scm noarch 8.0.4-6.fc41 copr_base 310.7 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 192.7 KiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 fedora 985.6 KiB boost x86_64 1.83.0-8.fc42 copr_base 1.3 KiB boost-atomic x86_64 1.83.0-8.fc42 copr_base 24.9 KiB boost-chrono x86_64 1.83.0-8.fc42 copr_base 41.6 KiB boost-container x86_64 1.83.0-8.fc42 copr_base 69.5 KiB boost-context x86_64 1.83.0-8.fc42 copr_base 16.5 KiB boost-contract x86_64 1.83.0-8.fc42 copr_base 103.2 KiB 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MiB/s | 29.4 KiB | 00m00s [245/280] perl-IO-Socket-IP-0:0.42-512. 100% | 2.4 MiB/s | 41.8 KiB | 00m00s [246/280] perl-URI-0:5.28-2.fc41.noarch 100% | 6.5 MiB/s | 120.1 KiB | 00m00s [247/280] nettle-0:3.10-3.fc41.x86_64 100% | 17.4 MiB/s | 428.5 KiB | 00m00s [248/280] perl-Term-ANSIColor-0:5.01-51 100% | 2.6 MiB/s | 47.7 KiB | 00m00s [249/280] perl-Term-Cap-0:1.18-511.fc41 100% | 1.1 MiB/s | 22.1 KiB | 00m00s [250/280] perl-Package-Stash-0:0.40-8.f 100% | 1.8 MiB/s | 32.6 KiB | 00m00s [251/280] perl-libnet-0:3.15-512.fc41.n 100% | 6.7 MiB/s | 123.0 KiB | 00m00s [252/280] ncurses-0:6.5-2.20240629.fc41 100% | 14.1 MiB/s | 419.1 KiB | 00m00s [253/280] perl-Sub-Exporter-0:0.991-4.f 100% | 3.3 MiB/s | 71.4 KiB | 00m00s [254/280] perl-Data-OptList-0:0.114-5.f 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [255/280] perl-Package-Generator-0:1.10 100% | 1.3 MiB/s | 22.5 KiB | 00m00s [256/280] perl-Params-Util-0:1.102-16.f 100% | 1.9 MiB/s | 32.8 KiB | 00m00s [257/280] perl-Sub-Install-0:0.929-6.fc 100% | 1.2 MiB/s | 22.9 KiB | 00m00s [258/280] perl-Pod-Escapes-1:1.07-511.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [259/280] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.2 MiB/s | 21.9 KiB | 00m00s [260/280] perl-Package-Stash-XS-0:0.30- 100% | 2.1 MiB/s | 36.1 KiB | 00m00s [261/280] perl-HTML-Tagset-0:3.24-2.fc4 100% | 1.1 MiB/s | 18.4 KiB | 00m00s [262/280] perl-HTTP-Message-0:6.46-2.fc 100% | 5.2 MiB/s | 96.4 KiB | 00m00s [263/280] perl-Class-Inspector-0:1.36-1 100% | 1.9 MiB/s | 30.4 KiB | 00m00s [264/280] perl-Date-ISO8601-0:0.005-21. 100% | 958.7 KiB/s | 19.2 KiB | 00m00s [265/280] perl-DateTime-TimeZone-System 100% | 1.3 MiB/s | 22.5 KiB | 00m00s [266/280] perl-Params-Classify-0:0.015- 100% | 1.5 MiB/s | 30.7 KiB | 00m00s [267/280] perl-Devel-CallChecker-0:0.00 100% | 1.5 MiB/s | 23.9 KiB | 00m00s [268/280] perl-Clone-0:0.47-1.fc42.x86_ 100% | 162.5 KiB/s | 22.3 KiB | 00m00s [269/280] perl-Compress-Raw-Zlib-0:2.21 100% | 227.4 KiB/s | 65.3 KiB | 00m00s [270/280] perl-Encode-Locale-0:1.05-30. 100% | 1.1 MiB/s | 18.6 KiB | 00m00s [271/280] perl-HTTP-Date-0:6.06-5.fc41. 100% | 1.4 MiB/s | 24.4 KiB | 00m00s [272/280] perl-IO-Compress-0:2.213-1.fc 100% | 278.2 KiB/s | 305.5 KiB | 00m01s [273/280] perl-Compress-Raw-Bzip2-0:2.2 100% | 309.2 KiB/s | 36.2 KiB | 00m00s [274/280] perl-IO-HTML-0:1.004-13.fc41. 100% | 1.1 MiB/s | 27.6 KiB | 00m00s [275/280] perl-LWP-MediaTypes-0:6.04-19 100% | 1.9 MiB/s | 33.1 KiB | 00m00s [276/280] perl-I18N-Langinfo-0:0.24-511 100% | 1.5 MiB/s | 25.7 KiB | 00m00s [277/280] perl-DynaLoader-Functions-0:0 100% | 1.2 MiB/s | 19.0 KiB | 00m00s [278/280] mailcap-0:2.1.54-7.fc41.noarc 100% | 1.8 MiB/s | 34.4 KiB | 00m00s [279/280] perltidy-0:20240903-1.fc42.no 100% | 298.3 KiB/s | 798.2 KiB | 00m03s [280/280] gcc-0:14.2.1-1.fc42.x86_64 100% | 327.4 KiB/s | 37.1 MiB | 01m56s -------------------------------------------------------------------------------- [280/280] Total 100% | 1.6 MiB/s | 190.9 MiB | 01m57s Running transaction [ 1/282] Verify package files 100% | 394.0 B/s | 280.0 B | 00m01s [ 2/282] Prepare transaction 100% | 823.0 B/s | 280.0 B | 00m00s [ 3/282] Installing cmake-filesystem-0 100% | 2.3 MiB/s | 7.1 KiB | 00m00s [ 4/282] Installing boost-system-0:1.8 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 5/282] Installing boost-chrono-0:1.8 100% | 41.6 MiB/s | 42.6 KiB | 00m00s [ 6/282] Installing boost-thread-0:1.8 100% | 67.3 MiB/s | 137.7 KiB | 00m00s [ 7/282] Installing libicu-0:74.2-2.fc 100% | 281.9 MiB/s | 35.0 MiB | 00m00s [ 8/282] Installing libmpc-0:1.3.1-6.f 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 9/282] Installing libgfortran-0:14.2 100% | 217.4 MiB/s | 3.0 MiB | 00m00s [ 10/282] Installing boost-regex-0:1.83 100% | 134.7 MiB/s | 275.8 KiB | 00m00s [ 11/282] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 12/282] Installing libwebp-0:1.4.0-4. 100% | 134.6 MiB/s | 826.8 KiB | 00m00s [ 13/282] Installing libquadmath-0:14.2 100% | 159.8 MiB/s | 327.2 KiB | 00m00s [ 14/282] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 15/282] Installing boost-context-0:1. 100% | 17.1 MiB/s | 17.5 KiB | 00m00s [ 16/282] Installing boost-atomic-0:1.8 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 17/282] Installing boost-filesystem-0 100% | 72.5 MiB/s | 148.6 KiB | 00m00s [ 18/282] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 19/282] Installing libpng-2:1.6.40-4. 100% | 120.6 MiB/s | 247.1 KiB | 00m00s [ 20/282] Installing libjpeg-turbo-0:3. 100% | 253.5 MiB/s | 778.7 KiB | 00m00s [ 21/282] Installing libaec-0:1.1.2-2.f 100% | 49.1 MiB/s | 100.5 KiB | 00m00s [ 22/282] Installing hdf5-0:1.12.1-20.f 100% | 254.3 MiB/s | 8.4 MiB | 00m00s [ 23/282] Installing make-1:4.4.1-8.fc4 100% | 180.0 MiB/s | 1.8 MiB | 00m00s [ 24/282] Installing vim-filesystem-2:9 100% | 4.6 MiB/s | 4.7 KiB | 00m00s [ 25/282] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 26/282] Installing expat-0:2.6.3-1.fc 100% | 95.6 MiB/s | 293.6 KiB | 00m00s [ 27/282] Installing boost-date-time-0: 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 28/282] Installing boost-container-0: 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [ 29/282] Installing boost-json-0:1.83. 100% | 161.2 MiB/s | 330.1 KiB | 00m00s [ 30/282] Installing boost-wave-0:1.83. 100% | 208.6 MiB/s | 640.8 KiB | 00m00s [ 31/282] Installing libaec-devel-0:1.1 100% | 12.6 MiB/s | 12.9 KiB | 00m00s [ 32/282] Installing pyproject-rpm-macr 100% | 52.6 MiB/s | 107.7 KiB | 00m00s [ 33/282] Installing boost-fiber-0:1.83 100% | 81.8 MiB/s | 83.7 KiB | 00m00s [ 34/282] Installing boost-log-0:1.83.0 100% | 245.9 MiB/s | 1.5 MiB | 00m00s [ 35/282] Installing boost-coroutine-0: 100% | 25.5 MiB/s | 26.2 KiB | 00m00s [ 36/282] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 37/282] Installing boost-graph-0:1.83 100% | 113.1 MiB/s | 347.3 KiB | 00m00s [ 38/282] Installing cpp-0:14.2.1-1.fc4 100% | 239.7 MiB/s | 35.0 MiB | 00m00s [ 39/282] Installing boost-locale-0:1.8 100% | 148.3 MiB/s | 607.2 KiB | 00m00s [ 40/282] Installing libicu-devel-0:74. 100% | 152.5 MiB/s | 5.6 MiB | 00m00s [ 41/282] Installing boost-type_erasure 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [ 42/282] Installing boost-timer-0:1.83 100% | 25.5 MiB/s | 26.1 KiB | 00m00s [ 43/282] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 44/282] Installing mailcap-0:2.1.54-7 100% | 85.0 MiB/s | 87.1 KiB | 00m00s [ 45/282] Installing ncurses-0:6.5-2.20 100% | 123.8 MiB/s | 633.9 KiB | 00m00s [ 46/282] Installing nettle-0:3.10-3.fc 100% | 194.4 MiB/s | 796.1 KiB | 00m00s [ 47/282] Installing gnutls-0:3.8.7-2.f 100% | 215.8 MiB/s | 3.2 MiB | 00m00s [ 48/282] Installing glib2-0:2.82.0-1.f 100% | 236.9 MiB/s | 14.7 MiB | 00m00s [ 49/282] Installing libvmaf-0:3.0.0-2. 100% | 201.3 MiB/s | 824.4 KiB | 00m00s [ 50/282] Installing libaom-0:3.9.0-3.f 100% | 297.7 MiB/s | 5.1 MiB | 00m00s [ 51/282] Installing svt-av1-libs-0:2.1 100% | 296.7 MiB/s | 7.1 MiB | 00m00s [ 52/282] Installing rav1e-libs-0:0.7.1 100% | 272.4 MiB/s | 3.0 MiB | 00m00s [ 53/282] Installing libdav1d-0:1.4.3-2 100% | 280.3 MiB/s | 1.7 MiB | 00m00s [ 54/282] Installing libavif-0:1.0.4-7. 100% | 90.4 MiB/s | 185.1 KiB | 00m00s [ 55/282] Installing libXau-0:1.0.11-7. 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [ 56/282] Installing libxcb-0:1.17.0-2. 100% | 124.1 MiB/s | 1.1 MiB | 00m00s [ 57/282] Installing openblas-0:0.3.26- 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [ 58/282] Installing openblas-openmp-0: 100% | 432.6 MiB/s | 39.4 MiB | 00m00s [ 59/282] Installing flexiblas-0:3.4.4- 100% | 48.5 MiB/s | 49.7 KiB | 00m00s [ 60/282] Installing flexiblas-openblas 100% | 43.1 MiB/s | 44.1 KiB | 00m00s [ 61/282] Installing flexiblas-netlib-0 100% | 177.8 MiB/s | 10.7 MiB | 00m00s >>> Running pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 >>> Stop pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 [ 62/282] Installing groff-base-0:1.23. 100% | 82.4 MiB/s | 3.9 MiB | 00m00s >>> Running post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 >>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 [ 63/282] Installing perl-Digest-0:1.20 100% | 36.2 MiB/s | 37.1 KiB | 00m00s [ 64/282] Installing perl-Digest-MD5-0: 100% | 30.1 MiB/s | 61.7 KiB | 00m00s [ 65/282] Installing perl-B-0:1.89-511. 100% | 163.2 MiB/s | 501.3 KiB | 00m00s [ 66/282] Installing perl-FileHandle-0: 100% | 9.5 MiB/s | 9.8 KiB | 00m00s [ 67/282] Installing perl-Data-Dumper-0 100% | 110.9 MiB/s | 113.6 KiB | 00m00s [ 68/282] Installing perl-libnet-0:3.15 100% | 72.0 MiB/s | 294.7 KiB | 00m00s [ 69/282] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 20.9 KiB | 00m00s [ 70/282] Installing perl-URI-0:5.28-2. 100% | 49.3 MiB/s | 252.3 KiB | 00m00s [ 71/282] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 72/282] Installing perl-File-Path-0:2 100% | 63.0 MiB/s | 64.5 KiB | 00m00s [ 73/282] Installing perl-locale-0:1.12 100% | 0.0 B/s | 6.9 KiB | 00m00s [ 74/282] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [ 75/282] Installing perl-Mozilla-CA-0: 100% | 10.6 MiB/s | 10.8 KiB | 00m00s [ 76/282] Installing perl-Net-SSLeay-0: 100% | 123.9 MiB/s | 1.4 MiB | 00m00s [ 77/282] Installing perl-IO-Socket-IP- 100% | 98.1 MiB/s | 100.5 KiB | 00m00s [ 78/282] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 79/282] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [ 80/282] Installing perl-IO-Socket-SSL 100% | 172.7 MiB/s | 707.4 KiB | 00m00s [ 81/282] Installing perl-POSIX-0:2.20- 100% | 115.4 MiB/s | 236.4 KiB | 00m00s [ 82/282] Installing perl-Class-Struct- 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 83/282] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.1 KiB | 00m00s [ 84/282] Installing perl-IPC-Open3-0:1 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [ 85/282] Installing perl-Term-ANSIColo 100% | 96.9 MiB/s | 99.2 KiB | 00m00s [ 86/282] Installing perl-Term-Cap-0:1. 100% | 29.9 MiB/s | 30.6 KiB | 00m00s [ 87/282] Installing perl-Pod-Simple-1: 100% | 111.4 MiB/s | 570.5 KiB | 00m00s [ 88/282] Installing perl-HTTP-Tiny-0:0 100% | 75.3 MiB/s | 154.2 KiB | 00m00s [ 89/282] Installing perl-Socket-4:2.03 100% | 123.1 MiB/s | 126.1 KiB | 00m00s [ 90/282] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.6 KiB | 00m00s [ 91/282] Installing perl-Symbol-0:1.09 100% | 7.0 MiB/s | 7.2 KiB | 00m00s [ 92/282] Installing perl-File-stat-0:1 100% | 12.7 MiB/s | 13.1 KiB | 00m00s [ 93/282] Installing perl-podlators-1:6 100% | 157.0 MiB/s | 321.4 KiB | 00m00s [ 94/282] Installing perl-Pod-Perldoc-0 100% | 55.1 MiB/s | 169.3 KiB | 00m00s [ 95/282] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 12.9 KiB | 00m00s [ 96/282] Installing perl-Fcntl-0:1.18- 100% | 48.9 MiB/s | 50.1 KiB | 00m00s [ 97/282] Installing perl-Text-ParseWor 100% | 14.2 MiB/s | 14.6 KiB | 00m00s [ 98/282] Installing perl-overloading-0 100% | 0.0 B/s | 5.5 KiB | 00m00s [ 99/282] Installing perl-IO-0:1.55-511 100% | 50.6 MiB/s | 155.3 KiB | 00m00s [100/282] Installing perl-mro-0:1.29-51 100% | 45.6 MiB/s | 46.7 KiB | 00m00s [101/282] Installing perl-Pod-Usage-4:2 100% | 42.2 MiB/s | 86.3 KiB | 00m00s [102/282] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [103/282] Installing perl-constant-0:1. 100% | 26.7 MiB/s | 27.4 KiB | 00m00s [104/282] Installing perl-vars-0:1.05-5 100% | 4.2 MiB/s | 4.3 KiB | 00m00s [105/282] Installing perl-parent-1:0.24 100% | 0.0 B/s | 10.7 KiB | 00m00s [106/282] Installing perl-Errno-0:1.38- 100% | 0.0 B/s | 8.8 KiB | 00m00s [107/282] Installing perl-Scalar-List-U 100% | 73.1 MiB/s | 149.7 KiB | 00m00s [108/282] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 11.7 KiB | 00m00s [109/282] Installing perl-MIME-Base64-0 100% | 23.6 MiB/s | 48.4 KiB | 00m00s [110/282] Installing perl-Storable-1:3. 100% | 114.3 MiB/s | 234.0 KiB | 00m00s [111/282] Installing perl-overload-0:1. 100% | 70.3 MiB/s | 71.9 KiB | 00m00s [112/282] Installing perl-Getopt-Long-1 100% | 71.9 MiB/s | 147.2 KiB | 00m00s 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Installing lexertl14-devel-1: 100% | 1.4 MiB/s | 585.5 KiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Warning: skipped PGP checks for 246 package(s). Finish: build setup for morphio-3.3.9-5.fc42.src.rpm Start: rpmbuild morphio-3.3.9-5.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.KFcAkG + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + test -d /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YkE4hs + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd /builddir/build/BUILD/morphio-3.3.9-build + rm -rf MorphIO-3.3.9 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.3.9.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.3.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-setup.py-from-cmake-build.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LmICcp + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTERNAL_PYBIND11:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DBUILD_BINDINGS:BOOL=TRUE -DMorphIO_CXX_WARNINGS:BOOL=FALSE -DMORPHIO_TESTS:BOOL=TRUE -DEXTERNAL_CATCH2:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.3.9 -GNinja -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.1") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:84 (include) -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:42 (include) -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [1/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/dendritic_spine.cpp [2/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/endoplasmic_reticulum.cpp [3/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/enums.cpp [4/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/errorMessages.cpp [5/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/collection.cpp.o -MF src/CMakeFiles/morphio_obj.dir/collection.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/collection.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/collection.cpp [6/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF tests/CMakeFiles/unittests.dir/main.cpp.o.d -o tests/CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/main.cpp [53/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o -MF tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_point_utils.cpp [54/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_properties.cpp.o -MF tests/CMakeFiles/unittests.dir/test_properties.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_properties.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_properties.cpp [55/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o -MF tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_mutable_morphology.cpp [56/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_soma.cpp.o -MF tests/CMakeFiles/unittests.dir/test_soma.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_soma.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_soma.cpp [57/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_swc_reader.cpp [58/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -MF tests/CMakeFiles/unittests.dir/test_utilities.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_utilities.cpp [59/62] /usr/bin/cmake -E cmake_symlink_library src/libmorphio.so.0.0.0 src/libmorphio.so.0.0.0 src/libmorphio.so && : [60/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -MF tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_vasculature_morphology.cpp [61/62] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -shared -o binds/python/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lgcov -lhdf5 && cd /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/binds/python/_morphio.cpython-313-x86_64-linux-gnu.so [62/62] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_collection.cpp.o tests/CMakeFiles/unittests.dir/test_immutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_mitochondria.cpp.o tests/CMakeFiles/unittests.dir/test_morphology_readers.cpp.o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o tests/CMakeFiles/unittests.dir/test_properties.cpp.o tests/CMakeFiles/unittests.dir/test_soma.cpp.o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -o /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/bin/unittests src/libmorphio_static.a -lstdc++fs -lhdf5 -lgcov && : + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' /usr/lib/python3.13/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running build running build_py creating build creating build/lib creating build/lib/morphio copying morphio/__init__.py -> build/lib/morphio creating build/lib/morphio/mut copying morphio/mut/__init__.py -> build/lib/morphio/mut creating build/lib/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib/morphio/vasculature + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BQS4Pm + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + '[' /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.3.9-build + mkdir /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + DESTDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/tools.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/libmorphio.so -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/_morphio.cpython-313-x86_64-linux-gnu.so + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT --prefix /usr /usr/lib/python3.13/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio copying build/lib/morphio/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut copying build/lib/morphio/mut/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature copying build/lib/morphio/vasculature/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpwg2nae2b.py' /usr/bin/python3 /tmp/tmpwg2nae2b.py removing /tmp/tmpwg2nae2b.py running install_egg_info running egg_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/bin/__pycache__ + '[' /usr/lib/python3.13/site-packages '!=' /usr/lib64/python3.13/site-packages ']' + mv -v /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__ /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__init__.py' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature' + mv -v /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/ renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.9-5.fc42 --unique-debug-suffix -3.3.9-5.fc42.x86_64 --unique-debug-src-base morphio-3.3.9-5.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.3.9-5.fc42.x86_64 628 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 37 directories and 135 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.3.9-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.YIsDo5 + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/bin/unittests 1: Working Directory: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests 1: Test timeout computed to be: 10000000 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: All tests passed (444 assertions in 57 test cases) 1: 1/1 Test #1: unittests ........................ Passed 0.08 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.08 sec ++ basename /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 + xdir=MorphIO-3.3.9 + cd .. + k='not test_v2' + k='not test_v2 and not test_neurolucida_markers' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest MorphIO-3.3.9/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v ============================= test session starts ============================== platform linux -- Python 3.13.0rc2, pytest-8.3.1, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 configfile: pyproject.toml collecting ... collected 160 items / 8 deselected / 152 selected MorphIO-3.3.9/tests/test_0_API.py::test_doc_exists PASSED [ 0%] MorphIO-3.3.9/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_types PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 8%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 10%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 12%] MorphIO-3.3.9/tests/test_1_swc.py::test_build_from_string PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_skip_comments PASSED [ 14%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_simple PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_repeated_id PASSED [ 16%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_weird_indent PASSED [ 18%] MorphIO-3.3.9/tests/test_1_swc.py::test_cyclic PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 20%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%] MorphIO-3.3.9/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_multiple_soma PASSED [ 24%] MorphIO-3.3.9/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_wrong_root_point PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_duplicate PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_root_node_split PASSED [ 27%] MorphIO-3.3.9/tests/test_1_swc.py::test_three_point_soma PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_version PASSED [ 29%] MorphIO-3.3.9/tests/test_1_swc.py::test_no_soma PASSED [ 30%] MorphIO-3.3.9/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 30%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_soma PASSED [ 31%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 33%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_header PASSED [ 35%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 37%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_children PASSED [ 39%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 41%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine1 PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_markers PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_string_markers PASSED [ 43%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_font PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 45%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_version PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 47%] MorphIO-3.3.9/tests/test_3_h5.py::test_v1 PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_wrong_section_type PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 49%] MorphIO-3.3.9/tests/test_3_h5.py::test_single_children PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_components PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_is_root PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_distance PASSED [ 52%] MorphIO-3.3.9/tests/test_4_immut.py::test_iter PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_offsets PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_connectivity PASSED [ 54%] MorphIO-3.3.9/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section___str__ PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 56%] MorphIO-3.3.9/tests/test_4_immut.py::test_from_pathlib PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_more_iter PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_glia PASSED [ 58%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine PASSED [ 59%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 59%] MorphIO-3.3.9/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 60%] MorphIO-3.3.9/tests/test_5_mut.py::test_point_level PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_connectivity PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_neurite PASSED [ 62%] MorphIO-3.3.9/tests/test_5_mut.py::test_single_neurite PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_child_section PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 64%] MorphIO-3.3.9/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_build_read_only PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 66%] MorphIO-3.3.9/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_mutable_section PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_iterators PASSED [ 68%] MorphIO-3.3.9/tests/test_5_mut.py::test_non_C_nparray PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_annotation PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_sibling PASSED [ 70%] MorphIO-3.3.9/tests/test_5_mut.py::test_nested_single_child PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_section___str__ PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_from_pathlib PASSED [ 72%] MorphIO-3.3.9/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection PASSED [ 74%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia_round_trip PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 77%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 79%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 81%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 83%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 84%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_basic PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_basic PASSED [ 87%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%] MorphIO-3.3.9/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_modifier PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%] MorphIO-3.3.9/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_contour PASSED [100%] ================= 151 passed, 1 skipped, 8 deselected in 0.71s ================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: morphio-3.3.9-5.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.R7iMGv + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.3.9-5.fc42 morphio(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.3.9-5.fc42.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.3.9-5.fc42 morphio-devel(x86-64) = 3.3.9-5.fc42 morphio-static = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.3.9-5.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GmiIG5 + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-morphio = 3.3.9-5.fc42 python3-morphio = 3.3.9-5.fc42 python3-morphio(x86-64) = 3.3.9-5.fc42 python3.13-morphio = 3.3.9-5.fc42 python3.13dist(morphio) = 3.3.9 python3dist(morphio) = 3.3.9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.3.9-5.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.cdmrGp + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + DOCDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/AUTHORS.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/CHANGELOG.md /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/README.rst /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/examples /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bEKoCL + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.3.9-5.fc42.x86_64 Provides: morphio-debugsource = 3.3.9-5.fc42 morphio-debugsource(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.3.9-5.fc42.x86_64 Provides: debuginfo(build-id) = 7eeded951d4826a8cbce95aa126b75ec8e959606 libmorphio.so.0.0.0-3.3.9-5.fc42.x86_64.debug()(64bit) morphio-debuginfo = 3.3.9-5.fc42 morphio-debuginfo(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.3.9-5.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-morphio-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.3.9-5.fc42.noarch.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.3.9-5.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.nVj0SV + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + test -d /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.3.9-build + rm -rf /builddir/build/BUILD/morphio-3.3.9-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild morphio-3.3.9-5.fc42.src.rpm Finish: build phase for morphio-3.3.9-5.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725747260.530682/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.3.9-5.fc42.src.rpm) Config(child) 5 minutes 57 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "morphio-debuginfo", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "src" }, { "name": "python3-morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio-debugsource", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio-doc", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "noarch" }, { "name": "morphio-devel", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" } ] } RPMResults finished