class Bio::BioAlignment::Sequence
A Sequence
is a simple and efficient container for String sequences. To add state to elements unpack it into an Elements
object with to_elements.
Attributes
id[R]
seq[R]
Public Class Methods
new(id, seq)
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# File lib/bio-alignment/sequence.rb, line 12 def initialize id, seq @id = id @id.freeze @seq = seq end
Public Instance Methods
<<(element)
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# File lib/bio-alignment/sequence.rb, line 40 def << element @seq += element.to_s end
[](index)
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# File lib/bio-alignment/sequence.rb, line 18 def [] index @seq[index] end
clone()
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# File lib/bio-alignment/sequence.rb, line 48 def clone Sequence.new(@id,@seq.clone) end
each() { |element| ... }
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empty_copy()
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# File lib/bio-alignment/sequence.rb, line 44 def empty_copy Sequence.new(@id,"") end
length()
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def []= index, value — we should not implement this for reasons of purity
@seq[index] = value
end
# File lib/bio-alignment/sequence.rb, line 26 def length @seq.length end
to_elements()
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to_s()
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# File lib/bio-alignment/sequence.rb, line 36 def to_s @seq.to_s end