class Bio::BioAlignment::Elements
Attributes
id[R]
seq[R]
Public Class Methods
new(id, seq)
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# File lib/bio-alignment/elements.rb, line 43 def initialize id, seq @id = id @id.freeze @seq = [] if seq.kind_of?(Elements) @seq = seq.clone elsif seq.kind_of?(String) seq.each_char do |c| @seq << Element.new(c) end else seq.each do |s| @seq << Element.new(s) end end end
Public Instance Methods
<<(element)
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# File lib/bio-alignment/elements.rb, line 76 def << element @seq << element end
[](index)
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# File lib/bio-alignment/elements.rb, line 60 def [] index @seq[index] end
clone()
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# File lib/bio-alignment/elements.rb, line 84 def clone copy = Elements.new(@id,"") @seq.each do |e| copy << e.clone end copy end
each() { |e| ... }
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# File lib/bio-alignment/elements.rb, line 68 def each @seq.each { |e| yield e } end
empty_copy()
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# File lib/bio-alignment/elements.rb, line 80 def empty_copy Elements.new(@id,"") end
length()
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# File lib/bio-alignment/elements.rb, line 64 def length @seq.length end
to_s()
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# File lib/bio-alignment/elements.rb, line 72 def to_s @seq.map{|e| e.to_s }.join("") end