module CagnutGatk::CheckTools

Public Instance Methods

check_gatk(path) click to toggle source
# File lib/cagnut_gatk/check_tools.rb, line 8
def check_gatk path
  check_tool_ver 'GATK' do
    `#{@java} -jar #{path} --version` if path
  end
end
check_tool(tools_path, refs=nil) click to toggle source
Calls superclass method
# File lib/cagnut_gatk/check_tools.rb, line 3
def check_tool tools_path, refs=nil
  super if defined?(super)
  check_gatk tools_path['gatk'] if @java
end