#!/bin/bash

cd “#{jobs_dir}/../” echo “#{script_name} is starting at $(date +%Y%m%d%H%M%S)” >> “#{jobs_dir}/finished_jobs” #{count_reads_params.join(“s”)} \

#{count_reads_params['params'].join(" \\\n  ")} \\
#{run_local}

EXITSTATUS=$?

if [ ! -s #{output} ] then

echo "Incomplete output file #{output}"
exit 100

fi

if [ $(stat –printf=“%s” #{output}) = 100 ];then

echo "Memory Error. Exitting."
exit 100

fi echo “#{script_name} is finished at $(date +%Y%m%d%H%M%S)” >> “#{jobs_dir}/finished_jobs”

if [ $EXITSTATUS -ne 0 ];then exit $EXITSTATUS;fi