Table of Contents - bel_parser-1.1.6 Documentation
Pages
Classes and Modules
Methods
-
::_builder_class
—
BELParser::Language::Semantics::Builder
-
::_builder_class
—
BELParser::Parsers::AST::Sexp
-
::_hash_url
—
BELParser::Resource::ResourceURLReader
-
::_map_signature
—
BELParser::Language::Semantics::SignatureMapping
-
::_remove_partial_warnings!
—
BELParser::Language::Semantics::SignatureMapping
-
::_temporary_datasets_file
—
BELParser::Resource::ResourceURLReader
-
::_temporary_resource_file
—
BELParser::Resource::ResourceURLReader
-
::annotation
—
BELParser::Script::Syntax::UndefinedAnnotationValue
-
::assert_is_a
—
BELParser::Parsers::AST
-
::assert_reader
—
BELParser::Resource::Reader
-
::build
—
BELParser::Language::Semantics::Builder
-
::build
—
BELParser::Parsers::AST::Sexp
-
::causal?
—
BELParser::Language::Version1_0::Relationships::CausesNoChange
-
::causal?
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::causal?
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::causal?
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::causal?
—
BELParser::Language::Version1_0::Relationships::Increases
-
::causal?
—
BELParser::Language::Version2_0::Relationships::CausesNoChange
-
::causal?
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::causal?
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::causal?
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::causal?
—
BELParser::Language::Version2_0::Relationships::Increases
-
::causal?
—
BELParser::Language::Version2_0::Relationships::Regulates
-
::complete
—
BELParser::Completion
-
::complete_argument
—
BELParser::Completion
-
::complete_function
—
BELParser::Completion
-
::complete_parameter
—
BELParser::Completion
-
::complete_relationship
—
BELParser::Completion
-
::consume
—
BELParser::Script::State::AnnotationDefinition
-
::consume
—
BELParser::Script::State::BELVersion
-
::consume
—
BELParser::Script::State::DocumentProperty
-
::consume
—
BELParser::Script::State::NamespaceDefinition
-
::consume
—
BELParser::Script::State::Set
-
::consume
—
BELParser::Script::State::Unset
-
::correlative?
—
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
::correlative?
—
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
::correlative?
—
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
::correlative?
—
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
::count_nested_statements
—
BELParser::Language::Semantics::DeeplyNestedStatement
-
::create_specification
—
BELParser::Language
-
::create_translator
—
BEL::Translator::Plugins::BelScript
-
::decreasing?
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::decreasing?
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::decreasing?
—
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
::decreasing?
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::decreasing?
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::decreasing?
—
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
::default_specification
—
BELParser::Language
-
::default_uri_reader
—
BELParser::Resource
-
::default_uri_reader=
—
BELParser::Resource
-
::default_url_reader
—
BELParser::Resource
-
::default_url_reader=
—
BELParser::Resource
-
::default_version
—
BELParser::Language
-
::defines_version?
—
BELParser::Language
-
::deprecated?
—
BELParser::Language::Version2_0::Relationships::Analogous
-
::deprecated?
—
BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
::deprecated?
—
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
::description
—
BELParser::Language::Version1_0::Functions::Abundance
-
::description
—
BELParser::Language::Version1_0::Functions::BiologicalProcess
-
::description
—
BELParser::Language::Version1_0::Functions::CatalyticActivity
-
::description
—
BELParser::Language::Version1_0::Functions::CellSecretion
-
::description
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
::description
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
::description
—
BELParser::Language::Version1_0::Functions::ComplexAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::CompositeAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::Degradation
-
::description
—
BELParser::Language::Version1_0::Functions::Fusion
-
::description
—
BELParser::Language::Version1_0::Functions::GeneAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
::description
—
BELParser::Language::Version1_0::Functions::KinaseActivity
-
::description
—
BELParser::Language::Version1_0::Functions::List
-
::description
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::MolecularActivity
-
::description
—
BELParser::Language::Version1_0::Functions::Pathology
-
::description
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
::description
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
::description
—
BELParser::Language::Version1_0::Functions::Products
-
::description
—
BELParser::Language::Version1_0::Functions::ProteinAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::ProteinModification
-
::description
—
BELParser::Language::Version1_0::Functions::Reactants
-
::description
—
BELParser::Language::Version1_0::Functions::Reaction
-
::description
—
BELParser::Language::Version1_0::Functions::RibosylationActivity
-
::description
—
BELParser::Language::Version1_0::Functions::RNAAbundance
-
::description
—
BELParser::Language::Version1_0::Functions::Substitution
-
::description
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
::description
—
BELParser::Language::Version1_0::Functions::Translocation
-
::description
—
BELParser::Language::Version1_0::Functions::TransportActivity
-
::description
—
BELParser::Language::Version1_0::Functions::Truncation
-
::description
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::description
—
BELParser::Language::Version1_0::Relationships::Analogous
-
::description
—
BELParser::Language::Version1_0::Relationships::Association
-
::description
—
BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
::description
—
BELParser::Language::Version1_0::Relationships::CausesNoChange
-
::description
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::description
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::description
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::description
—
BELParser::Language::Version1_0::Relationships::HasComponent
-
::description
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::description
—
BELParser::Language::Version1_0::Relationships::HasMember
-
::description
—
BELParser::Language::Version1_0::Relationships::HasMembers
-
::description
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::description
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::description
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::description
—
BELParser::Language::Version1_0::Relationships::Includes
-
::description
—
BELParser::Language::Version1_0::Relationships::Increases
-
::description
—
BELParser::Language::Version1_0::Relationships::IsA
-
::description
—
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
::description
—
BELParser::Language::Version1_0::Relationships::Orthologous
-
::description
—
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
::description
—
BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
::description
—
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
::description
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::description
—
BELParser::Language::Version1_0::Relationships::SubProcessOf
-
::description
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::description
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::description
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::description
—
BELParser::Language::Version2_0::Functions::Abundance
-
::description
—
BELParser::Language::Version2_0::Functions::Activity
-
::description
—
BELParser::Language::Version2_0::Functions::BiologicalProcess
-
::description
—
BELParser::Language::Version2_0::Functions::CellSecretion
-
::description
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
::description
—
BELParser::Language::Version2_0::Functions::ComplexAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::CompositeAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::Degradation
-
::description
—
BELParser::Language::Version2_0::Functions::Fragment
-
::description
—
BELParser::Language::Version2_0::Functions::FromLocation
-
::description
—
BELParser::Language::Version2_0::Functions::Fusion
-
::description
—
BELParser::Language::Version2_0::Functions::GeneAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::List
-
::description
—
BELParser::Language::Version2_0::Functions::Location
-
::description
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::MolecularActivity
-
::description
—
BELParser::Language::Version2_0::Functions::Pathology
-
::description
—
BELParser::Language::Version2_0::Functions::Products
-
::description
—
BELParser::Language::Version2_0::Functions::ProteinAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::ProteinModification
-
::description
—
BELParser::Language::Version2_0::Functions::Reactants
-
::description
—
BELParser::Language::Version2_0::Functions::Reaction
-
::description
—
BELParser::Language::Version2_0::Functions::RNAAbundance
-
::description
—
BELParser::Language::Version2_0::Functions::ToLocation
-
::description
—
BELParser::Language::Version2_0::Functions::Translocation
-
::description
—
BELParser::Language::Version2_0::Functions::Variant
-
::description
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::description
—
BELParser::Language::Version2_0::Relationships::Analogous
-
::description
—
BELParser::Language::Version2_0::Relationships::Association
-
::description
—
BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
::description
—
BELParser::Language::Version2_0::Relationships::CausesNoChange
-
::description
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::description
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::description
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::description
—
BELParser::Language::Version2_0::Relationships::HasComponent
-
::description
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::description
—
BELParser::Language::Version2_0::Relationships::HasMember
-
::description
—
BELParser::Language::Version2_0::Relationships::HasMembers
-
::description
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::description
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::description
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::description
—
BELParser::Language::Version2_0::Relationships::Includes
-
::description
—
BELParser::Language::Version2_0::Relationships::Increases
-
::description
—
BELParser::Language::Version2_0::Relationships::IsA
-
::description
—
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
::description
—
BELParser::Language::Version2_0::Relationships::Orthologous
-
::description
—
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
::description
—
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
::description
—
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
::description
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::description
—
BELParser::Language::Version2_0::Relationships::Regulates
-
::description
—
BELParser::Language::Version2_0::Relationships::SubProcessOf
-
::description
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::description
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::description
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::description
—
BEL::Translator::Plugins::BelScript
-
::direct?
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::direct?
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::direct?
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::direct?
—
BELParser::Language::Version1_0::Relationships::HasComponent
-
::direct?
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::direct?
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::direct?
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::direct?
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::direct?
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::direct?
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::direct?
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::direct?
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::direct?
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::direct?
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::direct?
—
BELParser::Language::Version2_0::Relationships::HasComponent
-
::direct?
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::direct?
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::direct?
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::direct?
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::direct?
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::direct?
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::direct?
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::directed?
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::directed?
—
BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
::directed?
—
BELParser::Language::Version1_0::Relationships::CausesNoChange
-
::directed?
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::directed?
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::directed?
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasComponent
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasMember
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasMembers
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::directed?
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::directed?
—
BELParser::Language::Version1_0::Relationships::Includes
-
::directed?
—
BELParser::Language::Version1_0::Relationships::Increases
-
::directed?
—
BELParser::Language::Version1_0::Relationships::IsA
-
::directed?
—
BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
::directed?
—
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
::directed?
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::directed?
—
BELParser::Language::Version1_0::Relationships::SubProcessOf
-
::directed?
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::directed?
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::directed?
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::directed?
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::directed?
—
BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
::directed?
—
BELParser::Language::Version2_0::Relationships::CausesNoChange
-
::directed?
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::directed?
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::directed?
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasComponent
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasMember
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasMembers
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::directed?
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::directed?
—
BELParser::Language::Version2_0::Relationships::Includes
-
::directed?
—
BELParser::Language::Version2_0::Relationships::Increases
-
::directed?
—
BELParser::Language::Version2_0::Relationships::IsA
-
::directed?
—
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
::directed?
—
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
::directed?
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::directed?
—
BELParser::Language::Version2_0::Relationships::Regulates
-
::directed?
—
BELParser::Language::Version2_0::Relationships::SubProcessOf
-
::directed?
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::directed?
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::directed?
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::expression_validator
—
BELParser::Script::Syntax::ExpressionValidation
-
::file_extensions
—
BEL::Translator::Plugins::BelScript
-
::filter
—
BELParser::Expression
-
::find_node
—
BELParser::Completion
-
::genomic?
—
BELParser::Language::Version1_0::Relationships::Analogous
-
::genomic?
—
BELParser::Language::Version1_0::Relationships::Orthologous
-
::genomic?
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::genomic?
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::genomic?
—
BELParser::Language::Version2_0::Relationships::Analogous
-
::genomic?
—
BELParser::Language::Version2_0::Relationships::Orthologous
-
::genomic?
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::genomic?
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::handle_annotation
—
BELParser::Script::State::Set
-
::handle_annotation
—
BELParser::Script::State::Unset
-
::handle_citation
—
BELParser::Script::State::Set
-
::handle_list
—
BELParser::Script::State::AnnotationDefinition
-
::handle_pattern
—
BELParser::Script::State::AnnotationDefinition
-
::handle_statement_group
—
BELParser::Script::State::Set
-
::handle_statement_group
—
BELParser::Script::State::Unset
-
::handle_support
—
BELParser::Script::State::Set
-
::handle_uri
—
BELParser::Script::State::AnnotationDefinition
-
::handle_url
—
BELParser::Script::State::AnnotationDefinition
-
::id
—
BEL::Translator::Plugins::BelScript
-
::included
—
BELParser::Resources
-
::includes?
—
BELParser::Language::AminoAcid
-
::includes?
—
BELParser::Language::CovalentProteinModification
-
::increasing?
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::increasing?
—
BELParser::Language::Version1_0::Relationships::Increases
-
::increasing?
—
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
::increasing?
—
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
::increasing?
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::increasing?
—
BELParser::Language::Version2_0::Relationships::Increases
-
::increasing?
—
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
::increasing?
—
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
::inherited
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::inherited
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::inherited
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::inherited
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::injected?
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::injected?
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::injected?
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::injected?
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::injected?
—
BELParser::Language::Version1_0::Relationships::Includes
-
::injected?
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::injected?
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::injected?
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::injected?
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::injected?
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::injected?
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::injected?
—
BELParser::Language::Version2_0::Relationships::Includes
-
::injected?
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::injected?
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::latest_supported_specification
—
BELParser::Language
-
::latest_supported_version
—
BELParser::Language
-
::listable?
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::listable?
—
BELParser::Language::Version1_0::Relationships::HasMembers
-
::listable?
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::listable?
—
BELParser::Language::Version2_0::Relationships::HasMembers
-
::load_version_path
—
BELParser::Language::BaseSpecification
-
::long
—
BELParser::Language::Version1_0::Functions::Abundance
-
::long
—
BELParser::Language::Version1_0::Functions::BiologicalProcess
-
::long
—
BELParser::Language::Version1_0::Functions::CatalyticActivity
-
::long
—
BELParser::Language::Version1_0::Functions::CellSecretion
-
::long
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
::long
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
::long
—
BELParser::Language::Version1_0::Functions::ComplexAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::CompositeAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::Degradation
-
::long
—
BELParser::Language::Version1_0::Functions::Fusion
-
::long
—
BELParser::Language::Version1_0::Functions::GeneAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
::long
—
BELParser::Language::Version1_0::Functions::KinaseActivity
-
::long
—
BELParser::Language::Version1_0::Functions::List
-
::long
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::MolecularActivity
-
::long
—
BELParser::Language::Version1_0::Functions::Pathology
-
::long
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
::long
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
::long
—
BELParser::Language::Version1_0::Functions::Products
-
::long
—
BELParser::Language::Version1_0::Functions::ProteinAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::ProteinModification
-
::long
—
BELParser::Language::Version1_0::Functions::Reactants
-
::long
—
BELParser::Language::Version1_0::Functions::Reaction
-
::long
—
BELParser::Language::Version1_0::Functions::RibosylationActivity
-
::long
—
BELParser::Language::Version1_0::Functions::RNAAbundance
-
::long
—
BELParser::Language::Version1_0::Functions::Substitution
-
::long
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
::long
—
BELParser::Language::Version1_0::Functions::Translocation
-
::long
—
BELParser::Language::Version1_0::Functions::TransportActivity
-
::long
—
BELParser::Language::Version1_0::Functions::Truncation
-
::long
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::long
—
BELParser::Language::Version1_0::Relationships::Analogous
-
::long
—
BELParser::Language::Version1_0::Relationships::Association
-
::long
—
BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
::long
—
BELParser::Language::Version1_0::Relationships::CausesNoChange
-
::long
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::long
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::long
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::long
—
BELParser::Language::Version1_0::Relationships::HasComponent
-
::long
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::long
—
BELParser::Language::Version1_0::Relationships::HasMember
-
::long
—
BELParser::Language::Version1_0::Relationships::HasMembers
-
::long
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::long
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::long
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::long
—
BELParser::Language::Version1_0::Relationships::Includes
-
::long
—
BELParser::Language::Version1_0::Relationships::Increases
-
::long
—
BELParser::Language::Version1_0::Relationships::IsA
-
::long
—
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
::long
—
BELParser::Language::Version1_0::Relationships::Orthologous
-
::long
—
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
::long
—
BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
::long
—
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
::long
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::long
—
BELParser::Language::Version1_0::Relationships::SubProcessOf
-
::long
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::long
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::long
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::long
—
BELParser::Language::Version2_0::Functions::Abundance
-
::long
—
BELParser::Language::Version2_0::Functions::Activity
-
::long
—
BELParser::Language::Version2_0::Functions::BiologicalProcess
-
::long
—
BELParser::Language::Version2_0::Functions::CellSecretion
-
::long
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
::long
—
BELParser::Language::Version2_0::Functions::ComplexAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::CompositeAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::Degradation
-
::long
—
BELParser::Language::Version2_0::Functions::Fragment
-
::long
—
BELParser::Language::Version2_0::Functions::FromLocation
-
::long
—
BELParser::Language::Version2_0::Functions::Fusion
-
::long
—
BELParser::Language::Version2_0::Functions::GeneAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::List
-
::long
—
BELParser::Language::Version2_0::Functions::Location
-
::long
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::MolecularActivity
-
::long
—
BELParser::Language::Version2_0::Functions::Pathology
-
::long
—
BELParser::Language::Version2_0::Functions::Products
-
::long
—
BELParser::Language::Version2_0::Functions::ProteinAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::ProteinModification
-
::long
—
BELParser::Language::Version2_0::Functions::Reactants
-
::long
—
BELParser::Language::Version2_0::Functions::Reaction
-
::long
—
BELParser::Language::Version2_0::Functions::RNAAbundance
-
::long
—
BELParser::Language::Version2_0::Functions::ToLocation
-
::long
—
BELParser::Language::Version2_0::Functions::Translocation
-
::long
—
BELParser::Language::Version2_0::Functions::Variant
-
::long
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::long
—
BELParser::Language::Version2_0::Relationships::Analogous
-
::long
—
BELParser::Language::Version2_0::Relationships::Association
-
::long
—
BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
::long
—
BELParser::Language::Version2_0::Relationships::CausesNoChange
-
::long
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::long
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::long
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::long
—
BELParser::Language::Version2_0::Relationships::HasComponent
-
::long
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::long
—
BELParser::Language::Version2_0::Relationships::HasMember
-
::long
—
BELParser::Language::Version2_0::Relationships::HasMembers
-
::long
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::long
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::long
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::long
—
BELParser::Language::Version2_0::Relationships::Includes
-
::long
—
BELParser::Language::Version2_0::Relationships::Increases
-
::long
—
BELParser::Language::Version2_0::Relationships::IsA
-
::long
—
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
::long
—
BELParser::Language::Version2_0::Relationships::Orthologous
-
::long
—
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
::long
—
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
::long
—
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
::long
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::long
—
BELParser::Language::Version2_0::Relationships::Regulates
-
::long
—
BELParser::Language::Version2_0::Relationships::SubProcessOf
-
::long
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::long
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::long
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::map
—
BELParser::Language::Semantics::DeeplyNestedStatement
-
::map
—
BELParser::Language::Semantics::FunctionDeprecation
-
::map
—
BELParser::Language::Semantics::ListFunctionSubject
-
::map
—
BELParser::Language::Semantics::MultipleSubjectObject
-
::map
—
BELParser::Language::Semantics::NestedStatementWithoutObject
-
::map
—
BELParser::Language::Semantics::NonCausalNestedStatement
-
::map
—
BELParser::Language::Semantics::NonObjectList
-
::map
—
BELParser::Language::Semantics::RelationshipDeprecation
-
::map
—
BELParser::Language::Semantics::RelationshipNotListable
-
::map
—
BELParser::Language::Semantics::SignatureMapping
-
::map
—
BELParser::Language::Syntax::InvalidFunction
-
::map
—
BELParser::Language::Syntax::InvalidRelationship
-
::map
—
BELParser::Language::Syntax::UndefinedNamespace
-
::map
—
BELParser::Language::Syntax::UndefinedNamespaceValue
-
::map
—
BELParser::Script::Syntax::ExpressionValidation
-
::map
—
BELParser::Script::Syntax::InvalidRegexPattern
-
::map
—
BELParser::Script::Syntax::UndefinedAnnotation
-
::map
—
BELParser::Script::Syntax::UndefinedAnnotationValue
-
::map
—
BELParser::Script::Syntax::UnresolvableNamespace
-
::map
—
BELParser::Script::Syntax::UnsupportedBELVersion
-
::map
—
BELParser::Language::Semantics::SemanticsFunction
-
::map
—
BELParser::Language::Syntax::SyntaxFunction
-
::map_comment_line
—
LINE
-
::map_empty_line
—
LINE
-
::map_object
—
BELParser::Language::Semantics::NonObjectList
-
::map_statement
—
BELParser::Language::Semantics::RelationshipNotListable
-
::map_subject_object
—
BELParser::Language::Semantics::MultipleSubjectObject
-
::map_value
—
BELParser::Script::Syntax::UndefinedAnnotationValue
-
::match
—
BELParser::Language::Semantics
-
::match_comment_line
—
LINE
-
::match_empty_line
—
LINE
-
::media_types
—
BEL::Translator::Plugins::BelScript
-
::name
—
BEL::Translator::Plugins::BelScript
-
::names
—
BELParser::Language::AminoAcid
-
::names
—
BELParser::Language::CovalentProteinModification
-
::new
—
BEL::Translator::Plugins::BelScript::Reader
-
::new
—
BEL::Translator::Plugins::BelScript::Writer
-
::new
—
BELParser::ASTFilter
-
::new
—
BELParser::ASTGenerator
-
::new
—
BELParser::Completion::BaseCompleter
-
::new
—
BELParser::Completion::MergeCompletion
-
::new
—
BELParser::Expression::Filter
-
::new
—
BELParser::Expression::Model::Annotation
-
::new
—
BELParser::Expression::Model::Namespace
-
::new
—
BELParser::Expression::Model::Parameter
-
::new
—
BELParser::Expression::Model::Statement
-
::new
—
BELParser::Expression::Model::Term
-
::new
—
BELParser::Expression::Parser
-
::new
—
BELParser::Expression::Validator
-
::new
—
BELParser::Language::ApplyDefaultNamespace
-
::new
—
BELParser::Language::ApplyNamespaceEncoding
-
::new
—
BELParser::Language::ExpressionValidator
-
::new
—
BELParser::Language::ExpressionValidator::ParameterResult
-
::new
—
BELParser::Language::ExpressionValidator::TermResult
-
::new
—
BELParser::Language::ExpressionValidator::ObservedTermResult
-
::new
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
::new
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
::new
—
BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
::new
—
BELParser::Language::Semantics::FunctionDeprecationWarning
-
::new
—
BELParser::Language::Semantics::ListFunctionSubjectWarning
-
::new
—
BELParser::Language::Semantics::MultipleSubjectObjectWarning
-
::new
—
BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
-
::new
—
BELParser::Language::Semantics::NonCausalNestedStatementWarning
-
::new
—
BELParser::Language::Semantics::NonObjectListWarning
-
::new
—
BELParser::Language::Semantics::RelationshipDeprecationWarning
-
::new
—
BELParser::Language::Semantics::RelationshipNotMultipleWarning
-
::new
—
BELParser::Language::Semantics::SignatureMappingSuccess
-
::new
—
BELParser::Language::Semantics::SignatureMappingWarning
-
::new
—
BELParser::Language::Semantics::SemanticASTNode
-
::new
—
BELParser::Language::Semantics::SemanticTerm
-
::new
—
BELParser::Language::Semantics::SemanticStatement
-
::new
—
BELParser::Language::Semantics::SemanticParameter
-
::new
—
BELParser::Language::Semantics::SemanticFunction
-
::new
—
BELParser::Language::Semantics::SemanticArgument
-
::new
—
BELParser::Language::Semantics::SemanticVariadicArguments
-
::new
—
BELParser::Language::Semantics::SemanticPrefix
-
::new
—
BELParser::Language::Semantics::SemanticValue
-
::new
—
BELParser::Language::Semantics::SemanticIsNil
-
::new
—
BELParser::Language::Semantics::SemanticIdentifier
-
::new
—
BELParser::Language::Semantics::SemanticAny
-
::new
—
BELParser::Language::Semantics::SemanticHasNamespace
-
::new
—
BELParser::Language::Semantics::SemanticNamespaceOf
-
::new
—
BELParser::Language::Semantics::SemanticHasEncoding
-
::new
—
BELParser::Language::Semantics::SemanticEncodingOf
-
::new
—
BELParser::Language::Semantics::SemanticFunctionOf
-
::new
—
BELParser::Language::Semantics::SemanticReturnTypeOf
-
::new
—
BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
-
::new
—
BELParser::Language::Semantics::SemanticAminoAcidOf
-
::new
—
BELParser::Language::Semantics::SemanticIsAminoAcidRange
-
::new
—
BELParser::Language::Semantics::SemanticIsSequencePosition
-
::new
—
BELParser::Language::Semantics::SemanticsNilNodeWarning
-
::new
—
BELParser::Language::Semantics::SemanticsNotNilNodeWarning
-
::new
—
BELParser::Language::Semantics::SemanticsTypeWarning
-
::new
—
BELParser::Language::Semantics::SemanticsArgumentLengthWarning
-
::new
—
BELParser::Language::Semantics::SemanticsMissingNamespaceWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidNamespaceWarning
-
::new
—
BELParser::Language::Semantics::SemanticsMissingEncodingWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidEncodingWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidFunctionWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidReturnTypeWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidProteinModificationWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidAminoAcidRangeWarning
-
::new
—
BELParser::Language::Semantics::SemanticsInvalidSequencePositionWarning
-
::new
—
BELParser::Language::Semantics::SemanticMatch
-
::new
—
BELParser::Language::Semantics::SemanticsResult
-
::new
—
BELParser::Language::Semantics::SemanticsWarning
-
::new
—
BELParser::Language::Syntax::InvalidFunctionSyntaxError
-
::new
—
BELParser::Language::Syntax::InvalidRelationshipSyntaxError
-
::new
—
BELParser::Language::Syntax::UndefinedNamespaceError
-
::new
—
BELParser::Language::Syntax::UndefinedNamespaceValueWarning
-
::new
—
BELParser::Language::Syntax::SyntaxError
-
::new
—
BELParser::Language::Syntax::SyntaxResult
-
::new
—
BELParser::Language::Syntax::SyntaxWarning
-
::new
—
BELParser::Language::Version1_0::Specification
-
::new
—
BELParser::Language::Version2_0::Specification
-
::new
—
BELParser::Parsers::AST::Node
-
::new
—
BELParser::Parsers::AST::BlankLine
-
::new
—
BELParser::Parsers::AST::Comment
-
::new
—
BELParser::Parsers::AST::CommentLine
-
::new
—
BELParser::Parsers::AST::AnnotationDefinition
-
::new
—
BELParser::Parsers::AST::Function
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::Keyword
-
::new
—
BELParser::Parsers::AST::Domain
-
::new
—
BELParser::Parsers::AST::Url
-
::new
—
BELParser::Parsers::AST::Uri
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::Identifier
-
::new
—
BELParser::Parsers::AST::MultiIdentifier
-
::new
—
BELParser::Parsers::AST::LIST_NODE
-
::new
—
BELParser::Parsers::AST::ListItem
-
::new
—
BELParser::Parsers::AST::Argument
-
::new
—
BELParser::Parsers::AST::Prefix
-
::new
—
BELParser::Parsers::AST::Parameter
-
::new
—
BELParser::Parsers::AST::Relationship
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::Statement
-
::new
—
BELParser::Parsers::AST::NestedStatement
-
::new
—
BELParser::Parsers::AST::ObservedTerm
-
::new
—
BELParser::Parsers::AST::SimpleStatement
-
::new
—
BELParser::Parsers::AST::Subject
-
::new
—
BELParser::Parsers::AST::Object
-
::new
—
BELParser::Parsers::AST::String
-
::new
—
BELParser::Parsers::AST::Term
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::Name
-
::new
—
BELParser::Parsers::AST::Value
-
::new
—
BELParser::Parsers::BELScript::DefineAnnotation::Parser
-
::new
—
BELParser::Parsers::BELScript::DefineNamespace::Parser
-
::new
—
BELParser::Parsers::BELScript::Set::Parser
-
::new
—
BELParser::Parsers::BELScript::SetDocument::Parser
-
::new
—
BELParser::Parsers::BELScript::Unset::Parser
-
::new
—
BELParser::Parsers::Common::BlankLine::Parser
-
::new
—
BELParser::Parsers::Common::CommentLine::Parser
-
::new
—
BELParser::Parsers::Common::Function::Parser
-
::new
—
BELParser::Parsers::Common::Identifier::Parser
-
::new
—
BELParser::Parsers::Common::List::Parser
-
::new
—
BELParser::Parsers::Common::MultiIdentifier::Parser
-
::new
—
BELParser::Parsers::Common::String::Parser
-
::new
—
BELParser::Parsers::Expression::Comment::Parser
-
::new
—
BELParser::Parsers::Expression::NestedStatement::Parser
-
::new
—
BELParser::Parsers::Expression::ObservedTerm::Parser
-
::new
—
BELParser::Parsers::Expression::Parameter::Parser
-
::new
—
BELParser::Parsers::Expression::Relationship::Parser
-
::new
—
BELParser::Parsers::Expression::SimpleStatement::Parser
-
::new
—
BELParser::Parsers::Expression::StatementAutocomplete::Parser
-
::new
—
AST::Node
-
::new
—
BELParser::Parsers::Expression::Term::Parser
-
::new
—
NonblockingIOWrapper
-
::new
—
BELParser::Parsers::Serializer
-
::new
—
BELParser::Resource::Concept
-
::new
—
BELParser::Resource::ConceptScheme
-
::new
—
BELParser::Resource::EagerSPARQLReader
-
::new
—
BELParser::Resource::FileResource
-
::new
—
BELParser::Resource::FileResourceValue
-
::new
—
BELParser::Resource::JenaTDBReader
-
::new
—
BELParser::Resource::JenaTDBReader::ConceptScheme
-
::new
—
BELParser::Resource::JenaTDBReader::Concept
-
::new
—
BELParser::Resource::LRUCache
-
::new
—
BELParser::Resource::ResourceURLReader
-
::new
—
BELParser::Resource::SPARQLReader
-
::new
—
BELParser::Script::Filter
-
::new
—
BELParser::Script::FirstNode
-
::new
—
BELParser::Script::NanopubMapper
-
::new
—
BELParser::Parsers::AST::AnnotationDefinition
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::LIST_NODE
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Script::StateAggregator
-
::new
—
BELParser::Language::ExpressionValidator
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Script::Syntax::InvalidRegexPatternError
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Script::Syntax::UndefinedAnnotationError
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::LIST_NODE
-
::new
—
BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Script::Syntax::UnresolvableNamespaceError
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Script::Syntax::UnsupportedBELVersionWarning
-
::new
—
BELParser::Script::Validator
-
::new
—
BELParser::Parsers::AST::TARGET_NODE
-
::new
—
BELParser::Parsers::AST::LIST_NODE
-
::normalize_line_terminators
—
LINE
-
::open_datasets_file
—
BELParser::Resource::ResourceURLReader
-
::open_resource_file
—
BELParser::Resource::ResourceURLReader
-
::parameter_filter
—
BELParser::Expression
-
::parse
—
BELParser::Expression
-
::parse
—
BELParser::Parsers::BELScript::DefineAnnotation
-
::parse
—
BELParser::Parsers::BELScript::DefineNamespace
-
::parse
—
BELParser::Parsers::BELScript::Set
-
::parse
—
BELParser::Parsers::BELScript::SetDocument
-
::parse
—
BELParser::Parsers::BELScript::Unset
-
::parse
—
BELParser::Parsers::Common::BlankLine
-
::parse
—
BELParser::Parsers::Common::CommentLine
-
::parse
—
BELParser::Parsers::Common::Function
-
::parse
—
BELParser::Parsers::Common::Identifier
-
::parse
—
BELParser::Parsers::Common::List
-
::parse
—
BELParser::Parsers::Common::MultiIdentifier
-
::parse
—
BELParser::Parsers::Common::String
-
::parse
—
BELParser::Parsers::Expression::Comment
-
::parse
—
BELParser::Parsers::Expression::NestedStatement
-
::parse
—
BELParser::Parsers::Expression::ObservedTerm
-
::parse
—
BELParser::Parsers::Expression::Parameter
-
::parse
—
BELParser::Parsers::Expression::Relationship
-
::parse
—
BELParser::Parsers::Expression::SimpleStatement
-
::parse
—
BELParser::Parsers::Expression::StatementAutocomplete
-
::parse
—
BELParser::Parsers::Expression::Term
-
::parse
—
LINE
-
::parse_parameters
—
BELParser::Expression
-
::parse_statements
—
BELParser::Expression
-
::parse_terms
—
BELParser::Expression
-
::raise_not_implemented
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::raise_not_implemented
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::raise_not_implemented
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::raise_not_implemented
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::require_script_path
—
BELParser::Script::StateAggregator
-
::require_script_path
—
BELParser::Script::Validator
-
::resolve_uri
—
BELParser::Resource
-
::return_type
—
BELParser::Language::Version1_0::Functions::Abundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::BiologicalProcess
-
::return_type
—
BELParser::Language::Version1_0::Functions::CatalyticActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::CellSecretion
-
::return_type
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
::return_type
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::ComplexAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::CompositeAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::Degradation
-
::return_type
—
BELParser::Language::Version1_0::Functions::Fusion
-
::return_type
—
BELParser::Language::Version1_0::Functions::GeneAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::KinaseActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::List
-
::return_type
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::MolecularActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::Pathology
-
::return_type
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::Products
-
::return_type
—
BELParser::Language::Version1_0::Functions::ProteinAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::ProteinModification
-
::return_type
—
BELParser::Language::Version1_0::Functions::Reactants
-
::return_type
—
BELParser::Language::Version1_0::Functions::Reaction
-
::return_type
—
BELParser::Language::Version1_0::Functions::RibosylationActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::RNAAbundance
-
::return_type
—
BELParser::Language::Version1_0::Functions::Substitution
-
::return_type
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::Translocation
-
::return_type
—
BELParser::Language::Version1_0::Functions::TransportActivity
-
::return_type
—
BELParser::Language::Version1_0::Functions::Truncation
-
::return_type
—
BELParser::Language::Version2_0::Functions::Abundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::Activity
-
::return_type
—
BELParser::Language::Version2_0::Functions::BiologicalProcess
-
::return_type
—
BELParser::Language::Version2_0::Functions::CellSecretion
-
::return_type
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
::return_type
—
BELParser::Language::Version2_0::Functions::ComplexAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::CompositeAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::Degradation
-
::return_type
—
BELParser::Language::Version2_0::Functions::Fragment
-
::return_type
—
BELParser::Language::Version2_0::Functions::FromLocation
-
::return_type
—
BELParser::Language::Version2_0::Functions::Fusion
-
::return_type
—
BELParser::Language::Version2_0::Functions::GeneAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::List
-
::return_type
—
BELParser::Language::Version2_0::Functions::Location
-
::return_type
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::MolecularActivity
-
::return_type
—
BELParser::Language::Version2_0::Functions::Pathology
-
::return_type
—
BELParser::Language::Version2_0::Functions::Products
-
::return_type
—
BELParser::Language::Version2_0::Functions::ProteinAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::ProteinModification
-
::return_type
—
BELParser::Language::Version2_0::Functions::Reactants
-
::return_type
—
BELParser::Language::Version2_0::Functions::Reaction
-
::return_type
—
BELParser::Language::Version2_0::Functions::RNAAbundance
-
::return_type
—
BELParser::Language::Version2_0::Functions::ToLocation
-
::return_type
—
BELParser::Language::Version2_0::Functions::Translocation
-
::return_type
—
BELParser::Language::Version2_0::Functions::Variant
-
::self?
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::self?
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::self?
—
BELParser::Language::Version1_0::Relationships::Includes
-
::self?
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::self?
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::self?
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::self?
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::self?
—
BELParser::Language::Version2_0::Relationships::Includes
-
::self?
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::self?
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Abundance::Signatures::AbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Degradation::Signatures::DegradationSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceWithBreakpointsSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceWithBreakpointsSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceWithBreakpointsSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures::MolecularActivityOfAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Pathology::Signatures::PathologySignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Products::Signatures::ProductsSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithSubstitutionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithTruncationSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoPositionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Reactants::Signatures::ReactantsSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Reaction::Signatures::ReactionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Substitution::Signatures::SubstitutionWithReferencePositionVariantSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Translocation::Signatures::TranslocationSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version1_0::Functions::Truncation::Signatures::TruncationWithPositionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithMolecularActivitySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivitySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivityWithSpecificActivityTypeSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Degradation::Signatures::DegradationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeDescriptorSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnyDescriptorSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationAnySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithGeneEncodingSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithProteinEncodingSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithRNAEncodingSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithVariantSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationAnySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithVariantSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivitySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivityAnySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Pathology::Signatures::PathologySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Products::Signatures::ProductsSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFragmentSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithVariantSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoPositionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Reactants::Signatures::ReactantsSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Reaction::Signatures::ReactionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithVariantSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationAnySignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Translocation::Signatures::TranslocationSignature
-
::semantic_ast
—
BELParser::Language::Version2_0::Functions::Variant::Signatures::VariantSignature
-
::semantics_functions
—
BELParser::Language::Semantics
-
::short
—
BELParser::Language::Version1_0::Functions::Abundance
-
::short
—
BELParser::Language::Version1_0::Functions::BiologicalProcess
-
::short
—
BELParser::Language::Version1_0::Functions::CatalyticActivity
-
::short
—
BELParser::Language::Version1_0::Functions::CellSecretion
-
::short
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
::short
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
::short
—
BELParser::Language::Version1_0::Functions::ComplexAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::CompositeAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::Degradation
-
::short
—
BELParser::Language::Version1_0::Functions::Fusion
-
::short
—
BELParser::Language::Version1_0::Functions::GeneAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
::short
—
BELParser::Language::Version1_0::Functions::KinaseActivity
-
::short
—
BELParser::Language::Version1_0::Functions::List
-
::short
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::MolecularActivity
-
::short
—
BELParser::Language::Version1_0::Functions::Pathology
-
::short
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
::short
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
::short
—
BELParser::Language::Version1_0::Functions::Products
-
::short
—
BELParser::Language::Version1_0::Functions::ProteinAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::ProteinModification
-
::short
—
BELParser::Language::Version1_0::Functions::Reactants
-
::short
—
BELParser::Language::Version1_0::Functions::Reaction
-
::short
—
BELParser::Language::Version1_0::Functions::RibosylationActivity
-
::short
—
BELParser::Language::Version1_0::Functions::RNAAbundance
-
::short
—
BELParser::Language::Version1_0::Functions::Substitution
-
::short
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
::short
—
BELParser::Language::Version1_0::Functions::Translocation
-
::short
—
BELParser::Language::Version1_0::Functions::TransportActivity
-
::short
—
BELParser::Language::Version1_0::Functions::Truncation
-
::short
—
BELParser::Language::Version1_0::Relationships::ActsIn
-
::short
—
BELParser::Language::Version1_0::Relationships::Analogous
-
::short
—
BELParser::Language::Version1_0::Relationships::Association
-
::short
—
BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
::short
—
BELParser::Language::Version1_0::Relationships::CausesNoChange
-
::short
—
BELParser::Language::Version1_0::Relationships::Decreases
-
::short
—
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
::short
—
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
::short
—
BELParser::Language::Version1_0::Relationships::HasComponent
-
::short
—
BELParser::Language::Version1_0::Relationships::HasComponents
-
::short
—
BELParser::Language::Version1_0::Relationships::HasMember
-
::short
—
BELParser::Language::Version1_0::Relationships::HasMembers
-
::short
—
BELParser::Language::Version1_0::Relationships::HasModification
-
::short
—
BELParser::Language::Version1_0::Relationships::HasProduct
-
::short
—
BELParser::Language::Version1_0::Relationships::HasVariant
-
::short
—
BELParser::Language::Version1_0::Relationships::Includes
-
::short
—
BELParser::Language::Version1_0::Relationships::Increases
-
::short
—
BELParser::Language::Version1_0::Relationships::IsA
-
::short
—
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
::short
—
BELParser::Language::Version1_0::Relationships::Orthologous
-
::short
—
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
::short
—
BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
::short
—
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
::short
—
BELParser::Language::Version1_0::Relationships::ReactantIn
-
::short
—
BELParser::Language::Version1_0::Relationships::SubProcessOf
-
::short
—
BELParser::Language::Version1_0::Relationships::TranscribedTo
-
::short
—
BELParser::Language::Version1_0::Relationships::TranslatedTo
-
::short
—
BELParser::Language::Version1_0::Relationships::Translocates
-
::short
—
BELParser::Language::Version2_0::Functions::Abundance
-
::short
—
BELParser::Language::Version2_0::Functions::Activity
-
::short
—
BELParser::Language::Version2_0::Functions::BiologicalProcess
-
::short
—
BELParser::Language::Version2_0::Functions::CellSecretion
-
::short
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
::short
—
BELParser::Language::Version2_0::Functions::ComplexAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::CompositeAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::Degradation
-
::short
—
BELParser::Language::Version2_0::Functions::Fragment
-
::short
—
BELParser::Language::Version2_0::Functions::FromLocation
-
::short
—
BELParser::Language::Version2_0::Functions::Fusion
-
::short
—
BELParser::Language::Version2_0::Functions::GeneAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::List
-
::short
—
BELParser::Language::Version2_0::Functions::Location
-
::short
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::MolecularActivity
-
::short
—
BELParser::Language::Version2_0::Functions::Pathology
-
::short
—
BELParser::Language::Version2_0::Functions::Products
-
::short
—
BELParser::Language::Version2_0::Functions::ProteinAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::ProteinModification
-
::short
—
BELParser::Language::Version2_0::Functions::Reactants
-
::short
—
BELParser::Language::Version2_0::Functions::Reaction
-
::short
—
BELParser::Language::Version2_0::Functions::RNAAbundance
-
::short
—
BELParser::Language::Version2_0::Functions::ToLocation
-
::short
—
BELParser::Language::Version2_0::Functions::Translocation
-
::short
—
BELParser::Language::Version2_0::Functions::Variant
-
::short
—
BELParser::Language::Version2_0::Relationships::ActsIn
-
::short
—
BELParser::Language::Version2_0::Relationships::Analogous
-
::short
—
BELParser::Language::Version2_0::Relationships::Association
-
::short
—
BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
::short
—
BELParser::Language::Version2_0::Relationships::CausesNoChange
-
::short
—
BELParser::Language::Version2_0::Relationships::Decreases
-
::short
—
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
::short
—
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
::short
—
BELParser::Language::Version2_0::Relationships::HasComponent
-
::short
—
BELParser::Language::Version2_0::Relationships::HasComponents
-
::short
—
BELParser::Language::Version2_0::Relationships::HasMember
-
::short
—
BELParser::Language::Version2_0::Relationships::HasMembers
-
::short
—
BELParser::Language::Version2_0::Relationships::HasModification
-
::short
—
BELParser::Language::Version2_0::Relationships::HasProduct
-
::short
—
BELParser::Language::Version2_0::Relationships::HasVariant
-
::short
—
BELParser::Language::Version2_0::Relationships::Includes
-
::short
—
BELParser::Language::Version2_0::Relationships::Increases
-
::short
—
BELParser::Language::Version2_0::Relationships::IsA
-
::short
—
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
::short
—
BELParser::Language::Version2_0::Relationships::Orthologous
-
::short
—
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
::short
—
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
::short
—
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
::short
—
BELParser::Language::Version2_0::Relationships::ReactantIn
-
::short
—
BELParser::Language::Version2_0::Relationships::Regulates
-
::short
—
BELParser::Language::Version2_0::Relationships::SubProcessOf
-
::short
—
BELParser::Language::Version2_0::Relationships::TranscribedTo
-
::short
—
BELParser::Language::Version2_0::Relationships::TranslatedTo
-
::short
—
BELParser::Language::Version2_0::Relationships::Translocates
-
::signatures
—
BELParser::Language::Version1_0::Functions::Abundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::BiologicalProcess
-
::signatures
—
BELParser::Language::Version1_0::Functions::CatalyticActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::CellSecretion
-
::signatures
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
::signatures
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::ComplexAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::CompositeAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::Degradation
-
::signatures
—
BELParser::Language::Version1_0::Functions::Fusion
-
::signatures
—
BELParser::Language::Version1_0::Functions::GeneAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::KinaseActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::List
-
::signatures
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::MolecularActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::Pathology
-
::signatures
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::Products
-
::signatures
—
BELParser::Language::Version1_0::Functions::ProteinAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::ProteinModification
-
::signatures
—
BELParser::Language::Version1_0::Functions::Reactants
-
::signatures
—
BELParser::Language::Version1_0::Functions::Reaction
-
::signatures
—
BELParser::Language::Version1_0::Functions::RibosylationActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::RNAAbundance
-
::signatures
—
BELParser::Language::Version1_0::Functions::Substitution
-
::signatures
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::Translocation
-
::signatures
—
BELParser::Language::Version1_0::Functions::TransportActivity
-
::signatures
—
BELParser::Language::Version1_0::Functions::Truncation
-
::signatures
—
BELParser::Language::Version2_0::Functions::Abundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::Activity
-
::signatures
—
BELParser::Language::Version2_0::Functions::BiologicalProcess
-
::signatures
—
BELParser::Language::Version2_0::Functions::CellSecretion
-
::signatures
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
::signatures
—
BELParser::Language::Version2_0::Functions::ComplexAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::CompositeAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::Degradation
-
::signatures
—
BELParser::Language::Version2_0::Functions::Fragment
-
::signatures
—
BELParser::Language::Version2_0::Functions::FromLocation
-
::signatures
—
BELParser::Language::Version2_0::Functions::Fusion
-
::signatures
—
BELParser::Language::Version2_0::Functions::GeneAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::List
-
::signatures
—
BELParser::Language::Version2_0::Functions::Location
-
::signatures
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::MolecularActivity
-
::signatures
—
BELParser::Language::Version2_0::Functions::Pathology
-
::signatures
—
BELParser::Language::Version2_0::Functions::Products
-
::signatures
—
BELParser::Language::Version2_0::Functions::ProteinAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::ProteinModification
-
::signatures
—
BELParser::Language::Version2_0::Functions::Reactants
-
::signatures
—
BELParser::Language::Version2_0::Functions::Reaction
-
::signatures
—
BELParser::Language::Version2_0::Functions::RNAAbundance
-
::signatures
—
BELParser::Language::Version2_0::Functions::ToLocation
-
::signatures
—
BELParser::Language::Version2_0::Functions::Translocation
-
::signatures
—
BELParser::Language::Version2_0::Functions::Variant
-
::specification
—
BELParser::Language
-
::specifications
—
BELParser::Language
-
::state_constants
—
BELParser::Script::StateAggregator
-
::statement_filter
—
BELParser::Expression
-
::string_form
—
BELParser::Language::Version1_0::Functions::Abundance::Signatures::AbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Degradation::Signatures::DegradationSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceWithBreakpointsSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceWithBreakpointsSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceWithBreakpointsSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures::MolecularActivityOfAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Pathology::Signatures::PathologySignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Products::Signatures::ProductsSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithSubstitutionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithTruncationSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoPositionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Reactants::Signatures::ReactantsSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Reaction::Signatures::ReactionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Substitution::Signatures::SubstitutionWithReferencePositionVariantSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Translocation::Signatures::TranslocationSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version1_0::Functions::Truncation::Signatures::TruncationWithPositionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithMolecularActivitySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivitySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivityWithSpecificActivityTypeSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Degradation::Signatures::DegradationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeDescriptorSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnyDescriptorSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationAnySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithGeneEncodingSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithProteinEncodingSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithRNAEncodingSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithVariantSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationAnySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithVariantSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivitySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivityAnySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Pathology::Signatures::PathologySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Products::Signatures::ProductsSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFragmentSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithVariantSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoPositionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Reactants::Signatures::ReactantsSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Reaction::Signatures::ReactionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithVariantSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationAnySignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Translocation::Signatures::TranslocationSignature
-
::string_form
—
BELParser::Language::Version2_0::Functions::Variant::Signatures::VariantSignature
-
::subtype_of?
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::subtype_of?
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::subtype_of?
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::subtype_of?
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::subtypes
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::subtypes
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::subtypes
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::subtypes
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::syntax_constants
—
BELParser::Script::Validator
-
::syntax_functions
—
BELParser::Language::Syntax
-
::term_filter
—
BELParser::Expression
-
::to_a
—
BELParser::Version
-
::to_s
—
BELParser::Version
-
::to_str
—
BELParser::Version
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Abundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::BiologicalProcess
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::CatalyticActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::ChaperoneActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::ComplexAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Fusion
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::GeneAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::GTPBoundActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::KinaseActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::List
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::MicroRNAAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::MolecularActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Pathology
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::PeptidaseActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::PhosphataseActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Products
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::ProteinAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::ProteinModification
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Reactants
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::RibosylationActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::RNAAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Substitution
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::TranscriptionalActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::TransportActivity
-
::to_sym
—
BELParser::Language::Version1_0::ReturnTypes::Truncation
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::Abundance
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::BiologicalProcess
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::ComplexAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::GeneAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::MicroRNAAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::Pathology
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::ProteinAbundance
-
::to_sym
—
BELParser::Language::Version1_0::ValueEncodings::RNAAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Abundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Activity
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::BiologicalProcess
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::ComplexAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Fragment
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::FromLocation
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Fusion
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::GeneAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::List
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Location
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::MicroRNAAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::MolecularActivity
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Pathology
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Products
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::ProteinAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::ProteinModification
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Reactants
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::RNAAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::ToLocation
-
::to_sym
—
BELParser::Language::Version2_0::ReturnTypes::Variant
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::Abundance
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::Activity
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::BiologicalProcess
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::ComplexAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::GeneAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::Location
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::MicroRNAAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::Pathology
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::ProteinAbundance
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::ProteinModification
-
::to_sym
—
BELParser::Language::Version2_0::ValueEncodings::RNAAbundance
-
::transitive_subtypes
—
BELParser::Language::Version1_0::ReturnTypes::Any
-
::transitive_subtypes
—
BELParser::Language::Version1_0::ValueEncodings::Any
-
::transitive_subtypes
—
BELParser::Language::Version2_0::ReturnTypes::Any
-
::transitive_subtypes
—
BELParser::Language::Version2_0::ValueEncodings::Any
-
::values
—
BELParser::Language::AminoAcid
-
::values
—
BELParser::Language::CovalentProteinModification
-
::versions
—
BELParser::Language
-
#+
—
BELParser::Parsers::AST::Node
-
#+
—
AST::Node
-
#<<
—
BELParser::Expression::Model::Term
-
#<<
—
BELParser::Parsers::AST::Node
-
#<<
—
AST::Node
-
#<=>
—
BELParser::Expression::Model::Parameter
-
#<=>
—
BELParser::Language::Signature
-
#<=>
—
BELParser::Resource::Dataset
-
#<=>
—
BELParser::Resource::Value
-
#==
—
BELParser::Expression::Model::Annotation
-
#==
—
BELParser::Expression::Model::Namespace
-
#==
—
BELParser::Expression::Model::Parameter
-
#==
—
BELParser::Expression::Model::Statement
-
#==
—
BELParser::Expression::Model::Term
-
#==
—
AST::Node
-
#==
—
BELParser::Language::Relationship
-
#==
—
BELParser::Resource::Dataset
-
#==
—
BELParser::Resource::Value
-
#===
—
BELParser::Language::Function
-
#=~
—
BELParser::Language::Function
-
#=~
—
BELParser::Language::Relationship
-
#[]
—
BELParser::Expression::Model::Annotation
-
#[]
—
BELParser::Expression::Model::Namespace
-
#[]
—
BELParser::Resource::LRUCache
-
#[]=
—
BELParser::Resource::LRUCache
-
#_form_value
—
BELParser::Language::Function
-
#_form_value
—
BELParser::Language::Relationship
-
#_get
—
BELParser::Resource::ResourceURLReader
-
#_metadata
—
AST::Node
-
#add_loc_func
—
BELParser::Language::Version1_0::Upgrades::TranslocationTransformation
-
#add_molecular_activity
—
BELParser::Language::Version1_0::Upgrades::ActivityTransformation
-
#add_relationship_to_category
—
BELParser::Language::Specification
-
#add_syntax_error
—
BELParser::Parsers::AST::Node
-
#amino_acid_of
—
BELParser::Language::Semantics::Builder
-
#amino_acids
—
BELParser::Language::Semantics::SemanticAminoAcidOf
-
#annotation_definition
—
BELParser::Parsers::AST::Sexp
-
#annotation_resource?
—
BELParser::Resource::Dataset
-
#annotation_values
—
BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#annotations
—
BEL::Translator::Plugins::BelScript::Writer
-
#any
—
BELParser::Language::Semantics::Builder
-
#append
—
BELParser::Parsers::AST::Node
-
#append
—
AST::Node
-
#argument
—
BELParser::Language::Semantics::Builder
-
#argument
—
BELParser::Parsers::AST::Sexp
-
#argument_length_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#arguments
—
BELParser::Language::Semantics::SemanticTerm
-
#arguments
—
BELParser::Parsers::AST::Term
-
#arguments=
—
BELParser::Expression::Model::Term
-
#assert_namespace_type
—
BELParser::Expression::Model::Parameter
-
#assert_value_type
—
BELParser::Expression::Model::Parameter
-
#assign_properties
—
AST::Node
-
#assign_relationship_categories
—
BELParser::Language::Specification
-
#ast_to_namespace
—
BELParser::Expression::Model::Converters
-
#ast_to_parameter
—
BELParser::Expression::Model::Converters
-
#ast_to_statement
—
BELParser::Expression::Model::Converters
-
#ast_to_term
—
BELParser::Expression::Model::Converters
-
#blank_line
—
BELParser::Parsers::AST::Sexp
-
#causal?
—
BELParser::Language::Relationship
-
#child
—
BELParser::Parsers::AST::Node
-
#child
—
BELParser::Parsers::AST::Domain
-
#child
—
BELParser::Parsers::AST::Argument
-
#child
—
BELParser::Parsers::AST::Object
-
#children?
—
BELParser::Parsers::AST::Node
-
#citation
—
BELParser::Script::NanopubMapper
-
#citation_value
—
BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#clear
—
BELParser::Resource::LRUCache
-
#clone
—
AST::Node
-
#collapse
—
BELParser::Language::TermTransformation
-
#comment
—
BELParser::Parsers::AST::Statement
-
#comment
—
BELParser::Parsers::AST::Sexp
-
#comment?
—
BELParser::Parsers::AST::Statement
-
#comment_line
—
BELParser::Parsers::AST::Sexp
-
#complete
—
BELParser::Completion::BaseCompleter
-
#complete
—
BELParser::Completion::FunctionCompleter
-
#complete
—
BELParser::Completion::AllFunctionCompleter
-
#complete
—
BELParser::Completion::NamespacePrefixCompleter
-
#complete
—
BELParser::Completion::AllNamespacePrefixCompleter
-
#complete
—
BELParser::Completion::AllNamespacePrefixArgumentCompleter
-
#complete
—
BELParser::Completion::WildcardMatchParameterCompleter
-
#complete
—
BELParser::Completion::ExactMatchParameterCompleter
-
#complete
—
BELParser::Completion::RelationshipCompleter
-
#complete
—
BELParser::Completion::AllRelationshipCompleter
-
#complete?
—
BELParser::Parsers::AST::Node
-
#concat
—
BELParser::Parsers::AST::Node
-
#concat
—
AST::Node
-
#consume
—
BELParser::Script::StateFunction
-
#convert_argument
—
BELParser::Expression::Model::Converters
-
#convert_ast
—
BELParser::Expression::Parser
-
#convert_encoding_types
—
BELParser::Resource::Concept
-
#convert_encoding_types
—
BELParser::Resource::JenaTDBReader::Concept
-
#convert_function
—
BELParser::Expression::Model::Converters
-
#convert_multiple
—
BELParser::Expression::Parser
-
#convert_object
—
BELParser::Expression::Model::Converters
-
#convert_relationship
—
BELParser::Expression::Model::Converters
-
#convert_stream
—
BELParser::Expression::Parser
-
#convert_types
—
BELParser::Resource::ConceptScheme
-
#convert_types
—
BELParser::Resource::JenaTDBReader::ConceptScheme
-
#correlative?
—
BELParser::Language::Relationship
-
#count
—
BELParser::Resource::LRUCache
-
#covalent_protein_modification_of
—
BELParser::Language::Semantics::Builder
-
#covalent_protein_modification_types
—
BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
-
#create_resource
—
BELParser::Resource::ResourceURLReader
-
#cumulative_annotations
—
BEL::Translator::Plugins::BelScript::BelCitationSerialization
-
#cumulative_annotations
—
BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
-
#cumulative_annotations
—
BEL::Translator::Plugins::BelScript::BelTopDownSerialization
-
#dataset
—
BELParser::Resource::Value
-
#decreasing?
—
BELParser::Language::Relationship
-
#delete
—
BELParser::Resource::LRUCache
-
#deprecated?
—
BELParser::Language::Function
-
#deprecated?
—
BELParser::Language::Relationship
-
#description
—
BELParser::Language::Function
-
#description
—
BELParser::Language::Relationship
-
#detail
—
BELParser::Language::ExpressionValidator::TermResult
-
#detail
—
BELParser::Language::ExpressionValidator::ObservedTermResult
-
#detail
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#detail
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#detail
—
BELParser::Language::ExpressionValidator::Result
-
#direct?
—
BELParser::Language::Relationship
-
#directed?
—
BELParser::Language::Relationship
-
#dna_sub_conversion
—
BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#dna_trunc_conversion
—
BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#document_header
—
BEL::Translator::Plugins::BelScript::Writer
-
#document_property
—
BELParser::Parsers::AST::Sexp
-
#domain
—
BELParser::Expression::Model::Namespace
-
#domain
—
BELParser::Parsers::AST::AnnotationDefinition
-
#domain
—
BELParser::Parsers::AST::TARGET_NODE
-
#domain
—
BELParser::Parsers::AST::AnnotationDefinition
-
#domain
—
BELParser::Parsers::AST::TARGET_NODE
-
#domain
—
BELParser::Parsers::AST::TARGET_NODE
-
#domain
—
BELParser::Parsers::AST::Sexp
-
#domain
—
BELParser::Resource::Dataset
-
#domain_equal?
—
BELParser::Expression::Model::Annotation
-
#domain_equal?
—
BELParser::Expression::Model::Namespace
-
#domain_value
—
BELParser::Script::NanopubMapper
-
#dup
—
AST::Node
-
#each
—
BEL::Translator::Plugins::BelScript::Reader
-
#each
—
BEL::Translator::Plugins::BelScript::Writer
-
#each
—
BELParser::ASTFilter
-
#each
—
BELParser::ASTGenerator
-
#each
—
BELParser::Expression::Filter
-
#each
—
BELParser::Expression::Model::Annotation
-
#each
—
BELParser::Expression::Model::Namespace
-
#each
—
BELParser::Expression::Validator
-
#each
—
BELParser::Parsers::BELScript::DefineAnnotation::Parser
-
#each
—
BELParser::Parsers::BELScript::DefineNamespace::Parser
-
#each
—
BELParser::Parsers::BELScript::Set::Parser
-
#each
—
BELParser::Parsers::BELScript::SetDocument::Parser
-
#each
—
BELParser::Parsers::BELScript::Unset::Parser
-
#each
—
BELParser::Parsers::Common::BlankLine::Parser
-
#each
—
BELParser::Parsers::Common::CommentLine::Parser
-
#each
—
BELParser::Parsers::Common::Function::Parser
-
#each
—
BELParser::Parsers::Common::Identifier::Parser
-
#each
—
BELParser::Parsers::Common::List::Parser
-
#each
—
BELParser::Parsers::Common::MultiIdentifier::Parser
-
#each
—
BELParser::Parsers::Common::String::Parser
-
#each
—
BELParser::Parsers::Expression::Comment::Parser
-
#each
—
BELParser::Parsers::Expression::NestedStatement::Parser
-
#each
—
BELParser::Parsers::Expression::ObservedTerm::Parser
-
#each
—
BELParser::Parsers::Expression::Parameter::Parser
-
#each
—
BELParser::Parsers::Expression::Relationship::Parser
-
#each
—
BELParser::Parsers::Expression::SimpleStatement::Parser
-
#each
—
BELParser::Parsers::Expression::StatementAutocomplete::Parser
-
#each
—
BELParser::Parsers::Expression::Term::Parser
-
#each
—
NonblockingIOWrapper
-
#each
—
BELParser::Resource::LRUCache
-
#each
—
BELParser::Script::Filter
-
#each
—
BELParser::Script::FirstNode
-
#each
—
BELParser::Script::NanopubMapper
-
#each
—
BELParser::Script::Parser
-
#each
—
BELParser::Script::StateAggregator
-
#each
—
BELParser::Script::Validator
-
#each_unsafe
—
BELParser::Resource::LRUCache
-
#empty_resource
—
BELParser::Resource::ResourceURLReader
-
#encoding_of
—
BELParser::Language::Semantics::Builder
-
#encodings
—
BELParser::Resource::Value
-
#epilogue
—
BEL::Translator::Plugins::BelScript::BelCitationSerialization
-
#epilogue
—
BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
-
#epilogue
—
BEL::Translator::Plugins::BelScript::BelTopDownSerialization
-
#epilogue
—
BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#eql?
—
AST::Node
-
#errors
—
BELParser::Script::NanopubMapper
-
#evict
—
BELParser::Resource::LRUCache
-
#execute_select
—
BELParser::Resource::SPARQLReader
-
#experiment_context
—
BELParser::Script::NanopubMapper
-
#failure?
—
BELParser::Language::Semantics::SemanticMatch
-
#failure?
—
BELParser::Language::Semantics::SemanticsResult
-
#failure?
—
BELParser::Language::Semantics::SemanticsWarning
-
#failure?
—
BELParser::Language::Syntax::SyntaxError
-
#failure?
—
BELParser::Language::Syntax::SyntaxResult
-
#failure?
—
BELParser::Language::Syntax::SyntaxWarning
-
#fancy_type
—
AST::Node
-
#fetch
—
BELParser::Resource::LRUCache
-
#filter
—
BELParser::ASTFilter
-
#find_value_uris
—
BELParser::Resource::JenaTDBReader
-
#first_child
—
BELParser::Parsers::AST::Node
-
#fourth_child
—
BELParser::Parsers::AST::Node
-
#freeze
—
BELParser::Parsers::AST::Node
-
#freeze_categories
—
BELParser::Language::Specification
-
#function
—
BELParser::Language::Semantics::SemanticTerm
-
#function
—
BELParser::Parsers::AST::Term
-
#function
—
BELParser::Language::Semantics::Builder
-
#function
—
BELParser::Language::Specification
-
#function
—
BELParser::Parsers::AST::Sexp
-
#function=
—
BELParser::Expression::Model::Term
-
#function_of
—
BELParser::Language::Semantics::Builder
-
#function_semantics=
—
BELParser::Parsers::AST::Term
-
#functions
—
BELParser::Language::Semantics::SemanticFunctionOf
-
#functions
—
BELParser::Language::Specification
-
#fusion_node?
—
BELParser::Language::Version1_0::Upgrades::FusionTransformation
-
#genomic?
—
BELParser::Language::Relationship
-
#getset
—
BELParser::Resource::LRUCache
-
#handler_missing
—
BELParser::Completion::MergeCompletion
-
#handler_missing
—
AST::Processor::Mixin
-
#has_encoding
—
BELParser::Language::Semantics::Builder
-
#has_key?
—
BELParser::Resource::LRUCache
-
#has_namespace
—
BELParser::Language::Semantics::Builder
-
#hash
—
BELParser::Expression::Model::Annotation
-
#hash
—
BELParser::Expression::Model::Namespace
-
#hash
—
BELParser::Expression::Model::Parameter
-
#hash
—
BELParser::Expression::Model::Statement
-
#hash
—
BELParser::Expression::Model::Term
-
#hash
—
BELParser::Resource::Dataset
-
#hash
—
BELParser::Resource::Value
-
#hash_to_concept
—
BELParser::Resource::JenaTDBReader
-
#hash_to_concept
—
BELParser::Resource::SPARQLReader
-
#hash_to_concept_scheme
—
BELParser::Resource::SPARQLReader
-
#http_get
—
BELParser::Resource::ResourceURLReader
-
#identifier
—
BELParser::Parsers::AST::Function
-
#identifier
—
BELParser::Parsers::AST::Keyword
-
#identifier
—
BELParser::Parsers::AST::Prefix
-
#identifier
—
BELParser::Parsers::AST::Name
-
#identifier
—
BELParser::Language::Semantics::Builder
-
#identifier
—
BELParser::Parsers::AST::Sexp
-
#identifier
—
BELParser::Resource::Dataset
-
#identifier
—
BELParser::Resource::Value
-
#identifier_value?
—
BELParser::Quoting
-
#include?
—
BELParser::Expression::Model::Namespace
-
#incomplete?
—
BELParser::Parsers::AST::Node
-
#increasing?
—
BELParser::Language::Relationship
-
#index_long_short
—
BELParser::Language::Specification
-
#index_sym
—
BELParser::Language::Specification
-
#indirect?
—
BELParser::Language::Relationship
-
#initialize_copy
—
BELParser::Expression::Model::Annotation
-
#initialize_copy
—
BELParser::Expression::Model::Namespace
-
#injected?
—
BELParser::Language::Relationship
-
#inspect
—
AST::Node
-
#inspect
—
BELParser::Language::Specification
-
#invalid?
—
BELParser::Expression::Model::Parameter
-
#invalid?
—
BELParser::Expression::Model::Term
-
#invalid_amino_acid_range_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_amino_acid_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_argument?
—
BELParser::Expression::Model::Term
-
#invalid_encoding_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_function_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_namespace
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_object_signatures
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#invalid_object_signatures
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#invalid_protein_modification_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_return_type_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_sequence_position_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#invalid_signature_mappings
—
BELParser::Language::ExpressionValidator::ParameterResult
-
#invalid_signature_mappings
—
BELParser::Language::ExpressionValidator::Result
-
#invalid_subject_signatures
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#invalid_subject_signatures
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#is_amino_acid_range_pattern
—
BELParser::Language::Semantics::Builder
-
#is_bel_version?
—
BELParser::Script::Keyword
-
#is_citation?
—
BELParser::Script::Keyword
-
#is_implicit_annotation?
—
BELParser::Script::Keyword
-
#is_nil
—
BELParser::Language::Semantics::Builder
-
#is_sequence_position
—
BELParser::Language::Semantics::Builder
-
#is_support?
—
BELParser::Script::Keyword
-
#key?
—
BELParser::Resource::LRUCache
-
#keyword
—
BELParser::Parsers::AST::AnnotationDefinition
-
#keyword
—
BELParser::Parsers::AST::TARGET_NODE
-
#keyword
—
BELParser::Parsers::AST::AnnotationDefinition
-
#keyword
—
BELParser::Parsers::AST::TARGET_NODE
-
#keyword
—
BELParser::Parsers::AST::TARGET_NODE
-
#keyword
—
BELParser::Parsers::AST::Sexp
-
#keyword
—
BELParser::Resource::Dataset
-
#list
—
BELParser::Parsers::AST::Sexp
-
#list?
—
BELParser::Parsers::AST::Domain
-
#list_item
—
BELParser::Parsers::AST::Sexp
-
#list_items
—
BELParser::Parsers::AST::LIST_NODE
-
#list_items
—
BELParser::Parsers::AST::LIST_NODE
-
#list_items
—
BELParser::Parsers::AST::LIST_NODE
-
#list_items
—
BELParser::Parsers::AST::LIST_NODE
-
#listable?
—
BELParser::Language::Relationship
-
#load_functions
—
BELParser::Language::BaseSpecification
-
#load_language_constants
—
BELParser::Language::BaseSpecification
-
#load_relationships
—
BELParser::Language::BaseSpecification
-
#load_return_types
—
BELParser::Language::BaseSpecification
-
#load_threads
—
BELParser::Resource::EagerReader
-
#load_upgrades
—
BELParser::Language::BaseSpecification
-
#load_value_encodings
—
BELParser::Language::BaseSpecification
-
#load_values
—
BELParser::Resource::EagerReader
-
#locks
—
BELParser::Resource::EagerReader
-
#long
—
BELParser::Language::Function
-
#long
—
BELParser::Language::Relationship
-
#make_completion
—
BELParser::Completion::FunctionCompleter
-
#make_completion
—
BELParser::Completion::FunctionTermCompleter
-
#make_completion
—
BELParser::Completion::FunctionArgumentCompleter
-
#make_completion
—
BELParser::Completion::AllFunctionCompleter
-
#make_completion
—
BELParser::Completion::AllFunctionTermCompleter
-
#make_completion
—
BELParser::Completion::AllFunctionArgumentCompleter
-
#make_completion
—
BELParser::Completion::NamespacePrefixCompleter
-
#make_completion
—
BELParser::Completion::NamespacePrefixArgumentCompleter
-
#make_completion
—
BELParser::Completion::RelationshipCompleter
-
#map_lines
—
BELParser::LineMapping
-
#map_value
—
BELParser::Completion::QuotedValue
-
#match
—
BELParser::Language::Semantics::SemanticTerm
-
#match
—
BELParser::Language::Semantics::SemanticStatement
-
#match
—
BELParser::Language::Semantics::SemanticParameter
-
#match
—
BELParser::Language::Semantics::SemanticFunction
-
#match
—
BELParser::Language::Semantics::SemanticArgument
-
#match
—
BELParser::Language::Semantics::SemanticVariadicArguments
-
#match
—
BELParser::Language::Semantics::SemanticPrefix
-
#match
—
BELParser::Language::Semantics::SemanticValue
-
#match
—
BELParser::Language::Semantics::SemanticIsNil
-
#match
—
BELParser::Language::Semantics::SemanticIdentifier
-
#match
—
BELParser::Language::Semantics::SemanticAny
-
#match
—
BELParser::Language::Semantics::SemanticHasNamespace
-
#match
—
BELParser::Language::Semantics::SemanticNamespaceOf
-
#match
—
BELParser::Language::Semantics::SemanticHasEncoding
-
#match
—
BELParser::Language::Semantics::SemanticEncodingOf
-
#match
—
BELParser::Language::Semantics::SemanticFunctionOf
-
#match
—
BELParser::Language::Semantics::SemanticReturnTypeOf
-
#match
—
BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
-
#match
—
BELParser::Language::Semantics::SemanticAminoAcidOf
-
#match
—
BELParser::Language::Semantics::SemanticIsAminoAcidRange
-
#match
—
BELParser::Language::Semantics::SemanticIsSequencePosition
-
#match_encoding
—
BELParser::Language::Semantics::SemanticEncodingOf
-
#max_size=
—
BELParser::Resource::LRUCache
-
#missing_encoding_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#missing_namespace_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#msg
—
BELParser::Language::Semantics::Valid
-
#msg
—
BELParser::Language::Semantics::SemanticsResult
-
#msg
—
BELParser::Language::Syntax::Valid
-
#msg
—
BELParser::Language::Syntax::InvalidFunctionSyntaxError
-
#msg
—
BELParser::Language::Syntax::InvalidRelationshipSyntaxError
-
#msg
—
BELParser::Language::Syntax::UndefinedNamespaceError
-
#msg
—
BELParser::Language::Syntax::UndefinedNamespaceValueWarning
-
#msg
—
BELParser::Language::Syntax::SyntaxError
-
#msg
—
BELParser::Language::Syntax::SyntaxResult
-
#msg
—
BELParser::Script::Syntax::InvalidRegexPatternError
-
#msg
—
BELParser::Script::Syntax::UndefinedAnnotationError
-
#msg
—
BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
#msg
—
BELParser::Script::Syntax::UnresolvableNamespaceError
-
#msg
—
BELParser::Script::Syntax::UnsupportedBELVersionWarning
-
#multi_identifier
—
BELParser::Parsers::AST::Sexp
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::TARGET_NODE
-
#name
—
BELParser::Parsers::AST::Sexp
-
#name
—
BELParser::Resource::Value
-
#namespace=
—
BELParser::Expression::Model::Parameter
-
#namespace_definition
—
BELParser::Parsers::AST::Sexp
-
#namespace_of
—
BELParser::Language::Semantics::Builder
-
#namespace_resource?
—
BELParser::Resource::Dataset
-
#namespaces
—
BEL::Translator::Plugins::BelScript::Writer
-
#namespaces
—
BELParser::Expression::Model::Statement
-
#namespaces
—
BELParser::Expression::Model::Term
-
#namespaces
—
BELParser::Language::Semantics::SemanticNamespaceOf
-
#nanopub
—
BELParser::Script::NanopubMapper
-
#nested?
—
BELParser::Expression::Model::Statement
-
#nested_statement
—
BELParser::Parsers::AST::Sexp
-
#nil_node_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#nonblocking_read
—
NonblockingIOWrapper
-
#normalize_line_terminator
—
BELParser::LineMapping
-
#not_nil_node_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#num_children
—
BELParser::Parsers::AST::Node
-
#object
—
BELParser::Parsers::AST::Statement
-
#object
—
BELParser::Parsers::AST::Sexp
-
#object?
—
BELParser::Parsers::AST::Statement
-
#object_valid?
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#object_valid?
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#observed_term
—
BELParser::Parsers::AST::Sexp
-
#on_annotation_definition
—
BELParser::Parsers::Serializer
-
#on_annotation_definition
—
BELParser::Script::ApplyResourceURI
-
#on_argument
—
BELParser::Language::ApplyDefaultNamespace
-
#on_argument
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_argument
—
BELParser::Parsers::Serializer
-
#on_argument
—
BELParser::Language::TermTransformation
-
#on_blank_line
—
BELParser::Parsers::Serializer
-
#on_comment_line
—
BELParser::Parsers::Serializer
-
#on_document_property
—
BELParser::Parsers::Serializer
-
#on_domain
—
BELParser::Parsers::Serializer
-
#on_function
—
BELParser::Language::Version1_0::Upgrades::ActivityTransformation
-
#on_function
—
BELParser::Parsers::Serializer
-
#on_function
—
BELParser::Language::TermTransformation
-
#on_identifier
—
BELParser::Parsers::Serializer
-
#on_keyword
—
BELParser::Parsers::Serializer
-
#on_list
—
BELParser::Parsers::Serializer
-
#on_list_item
—
BELParser::Parsers::Serializer
-
#on_name
—
BELParser::Parsers::Serializer
-
#on_namespace_definition
—
BELParser::Parsers::Serializer
-
#on_namespace_definition
—
BELParser::Script::ApplyResourceURI
-
#on_nested_statement
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_nested_statement
—
BELParser::Parsers::Serializer
-
#on_nested_statement
—
BELParser::Language::TermTransformation
-
#on_object
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_object
—
BELParser::Parsers::Serializer
-
#on_object
—
BELParser::Language::TermTransformation
-
#on_observed_term
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_observed_term
—
BELParser::Parsers::Serializer
-
#on_observed_term
—
BELParser::Language::TermTransformation
-
#on_parameter
—
BELParser::Language::ApplyDefaultNamespace
-
#on_parameter
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_parameter
—
BELParser::Parsers::Serializer
-
#on_pattern
—
BELParser::Parsers::Serializer
-
#on_prefix
—
BELParser::Language::ApplyDefaultNamespace
-
#on_prefix
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_prefix
—
BELParser::Parsers::Serializer
-
#on_relationship
—
BELParser::Parsers::Serializer
-
#on_set
—
BELParser::Parsers::Serializer
-
#on_simple_statement
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_simple_statement
—
BELParser::Parsers::Serializer
-
#on_simple_statement
—
BELParser::Language::TermTransformation
-
#on_statement
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_statement
—
BELParser::Parsers::Serializer
-
#on_statement
—
BELParser::Language::TermTransformation
-
#on_string
—
BELParser::Parsers::Serializer
-
#on_subject
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_subject
—
BELParser::Parsers::Serializer
-
#on_subject
—
BELParser::Language::TermTransformation
-
#on_term
—
BELParser::Language::ApplyDefaultNamespace
-
#on_term
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_term
—
BELParser::Language::Version1_0::Upgrades::ActivityTransformation
-
#on_term
—
BELParser::Language::Version1_0::Upgrades::FusionTransformation
-
#on_term
—
BELParser::Language::Version1_0::Upgrades::ProteinModificationTransformation
-
#on_term
—
BELParser::Language::Version1_0::Upgrades::TranslocationTransformation
-
#on_term
—
BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#on_term
—
BELParser::Parsers::Serializer
-
#on_term
—
BELParser::Language::TermTransformation
-
#on_unset
—
BELParser::Parsers::Serializer
-
#on_url
—
BELParser::Parsers::Serializer
-
#on_value
—
BELParser::Language::ApplyNamespaceEncoding
-
#on_value
—
BELParser::Parsers::Serializer
-
#ord_to_str
—
BELParser::Parsers::Buffer
-
#original_dup
—
AST::Node
-
#parameter
—
BELParser::Language::Semantics::Builder
-
#parameter
—
BELParser::Parsers::AST::Sexp
-
#parameter?
—
BELParser::Parsers::AST::Argument
-
#parse
—
BELParser::Expression::Parser
-
#parse_array
—
BELParser::Expression::Parser
-
#parse_io
—
BELParser::Expression::Parser
-
#parse_string
—
BELParser::Expression::Parser
-
#pattern
—
BELParser::Parsers::AST::Sexp
-
#pattern?
—
BELParser::Parsers::AST::Domain
-
#prefix
—
BELParser::Parsers::AST::Parameter
-
#prefix
—
BELParser::Language::Semantics::Builder
-
#prefix
—
BELParser::Parsers::AST::Sexp
-
#prefix_patterns
—
BELParser::Language::Semantics::SemanticPrefix
-
#process
—
AST::Processor::Mixin
-
#process_all
—
AST::Processor::Mixin
-
#protein_sub_conversion
—
BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#protein_trunc_conversion
—
BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#quote
—
BELParser::Quoting
-
#quote_if_needed
—
BELParser::Quoting
-
#quoted?
—
BELParser::Quoting
-
#range_a
—
BELParser::Parsers::AST::Node
-
#range_b
—
BELParser::Parsers::AST::Node
-
#range_end
—
BELParser::Parsers::AST::Node
-
#range_start
—
BELParser::Parsers::AST::Node
-
#read
—
BEL::Translator::Plugins::BelScript::BelScriptTranslator
-
#read_resource
—
BELParser::Resource::ResourceURLReader
-
#references
—
BELParser::Script::NanopubMapper
-
#relationship
—
BELParser::Parsers::AST::Statement
-
#relationship
—
BELParser::Language::Specification
-
#relationship
—
BELParser::Parsers::AST::Sexp
-
#relationship?
—
BELParser::Parsers::AST::Statement
-
#relationships
—
BELParser::Language::Specification
-
#report
—
BELParser::Script::NanopubMapper
-
#resources
—
BELParser::Resource::EagerReader
-
#retrieve_resource
—
BELParser::Resource::EagerSPARQLReader
-
#retrieve_resource
—
BELParser::Resource::JenaTDBReader
-
#retrieve_resource
—
BELParser::Resource::ResourceURLReader
-
#retrieve_resource
—
BELParser::Resource::SPARQLReader
-
#retrieve_resource
—
BELParser::Resource::EagerReader
-
#retrieve_resource
—
BELParser::Resource::LRUReader
-
#retrieve_resource
—
BELParser::Resource::Reader
-
#retrieve_value_from_resource
—
BELParser::Resource::EagerSPARQLReader
-
#retrieve_value_from_resource
—
BELParser::Resource::JenaTDBReader
-
#retrieve_value_from_resource
—
BELParser::Resource::ResourceURLReader
-
#retrieve_value_from_resource
—
BELParser::Resource::SPARQLReader
-
#retrieve_value_from_resource
—
BELParser::Resource::EagerReader
-
#retrieve_value_from_resource
—
BELParser::Resource::LRUReader
-
#retrieve_value_from_resource
—
BELParser::Resource::Reader
-
#retrieve_values_from_resource
—
BELParser::Resource::EagerSPARQLReader
-
#retrieve_values_from_resource
—
BELParser::Resource::JenaTDBReader
-
#retrieve_values_from_resource
—
BELParser::Resource::ResourceURLReader
-
#retrieve_values_from_resource
—
BELParser::Resource::SPARQLReader
-
#retrieve_values_from_resource
—
BELParser::Resource::EagerReader
-
#retrieve_values_from_resource
—
BELParser::Resource::LRUReader
-
#retrieve_values_from_resource
—
BELParser::Resource::Reader
-
#return_type
—
BELParser::Language::Function
-
#return_type
—
BELParser::Language::Specification
-
#return_type_of
—
BELParser::Language::Semantics::Builder
-
#return_types
—
BELParser::Language::Semantics::SemanticReturnTypeOf
-
#return_types
—
BELParser::Language::Specification
-
#s
—
AST::Sexp
-
#scheme_class?
—
BELParser::Resource::JenaTDBReader
-
#second_child
—
BELParser::Parsers::AST::Node
-
#self?
—
BELParser::Language::Relationship
-
#semantic_ast
—
BELParser::Language::Signature
-
#semantics
—
BELParser::Language::ExpressionValidator
-
#semantics
—
BELParser::Language::ExpressionValidator
-
#semantics_errors_s
—
BELParser::Language::ExpressionValidator::Result
-
#serialize
—
BELParser::Parsers
-
#set
—
BELParser::Parsers::AST::Sexp
-
#short
—
BELParser::Language::Function
-
#short
—
BELParser::Language::Relationship
-
#signatures
—
BELParser::Language::Function
-
#simple?
—
BELParser::Expression::Model::Statement
-
#simple_statement
—
BELParser::Parsers::AST::Sexp
-
#size
—
BELParser::Language::Signature
-
#statement
—
BELParser::Parsers::AST::NestedStatement
-
#statement
—
BELParser::Parsers::AST::ObservedTerm
-
#statement
—
BELParser::Parsers::AST::SimpleStatement
-
#statement
—
BELParser::Parsers::AST::Sexp
-
#statement?
—
BELParser::Parsers::AST::Object
-
#string
—
BELParser::Parsers::AST::Url
-
#string
—
BELParser::Parsers::AST::Uri
-
#string
—
BELParser::Parsers::AST::TARGET_NODE
-
#string
—
BELParser::Parsers::AST::TARGET_NODE
-
#string
—
BELParser::Parsers::AST::Sexp
-
#string_form
—
BELParser::Language::Signature
-
#string_literal
—
BELParser::Parsers::AST::Identifier
-
#string_literal
—
BELParser::Parsers::AST::MultiIdentifier
-
#string_literal
—
BELParser::Parsers::AST::Relationship
-
#string_literal
—
BELParser::Parsers::AST::String
-
#string_value
—
BELParser::Parsers::AST::String
-
#string_value?
—
BELParser::Quoting
-
#subject
—
BELParser::Parsers::AST::Statement
-
#subject
—
BELParser::Parsers::AST::Sexp
-
#subject_only?
—
BELParser::Expression::Model::Statement
-
#subject_valid?
—
BELParser::Language::ExpressionValidator::ObservedTermResult
-
#subject_valid?
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#subject_valid?
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#success
—
BELParser::Language::Semantics::SemanticASTNode
-
#success?
—
BELParser::Language::Semantics::SemanticMatch
-
#success?
—
BELParser::Language::Semantics::SemanticsResult
-
#success?
—
BELParser::Language::Semantics::SemanticsWarning
-
#success?
—
BELParser::Language::Syntax::SyntaxError
-
#success?
—
BELParser::Language::Syntax::SyntaxResult
-
#success?
—
BELParser::Language::Syntax::SyntaxWarning
-
#support
—
BELParser::Script::NanopubMapper
-
#support_value
—
BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#synonyms
—
BELParser::Resource::Value
-
#syntax
—
BELParser::Language::ExpressionValidator
-
#syntax
—
BELParser::Language::ExpressionValidator
-
#syntax_errors
—
BELParser::Parsers::AST::Node
-
#syntax_errors_s
—
BELParser::Language::ExpressionValidator::Result
-
#term
—
BELParser::Parsers::AST::Subject
-
#term
—
BELParser::Language::Semantics::Builder
-
#term
—
BELParser::Parsers::AST::Sexp
-
#term?
—
BELParser::Parsers::AST::Argument
-
#term?
—
BELParser::Parsers::AST::Object
-
#terminal?
—
BELParser::Language::Semantics::SemanticASTNode
-
#terminal?
—
BELParser::Language::Semantics::SemanticPrefix
-
#terminal?
—
BELParser::Language::Semantics::SemanticValue
-
#terminal?
—
BELParser::Language::Semantics::SemanticIsNil
-
#terminal?
—
BELParser::Language::Semantics::SemanticIdentifier
-
#third_child
—
BELParser::Parsers::AST::Node
-
#title
—
BELParser::Resource::Value
-
#to_a
—
AST::Node
-
#to_a
—
BELParser::Resource::LRUCache
-
#to_ast
—
AST::Node
-
#to_bel
—
AST::Node
-
#to_bel
—
BEL::Translator::Plugins::BelScript::BelCitationSerialization
-
#to_bel
—
BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
-
#to_bel
—
BEL::Translator::Plugins::BelScript::BelTopDownSerialization
-
#to_bel
—
BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#to_h
—
BELParser::Language::Function
-
#to_h
—
BELParser::Language::Relationship
-
#to_s
—
BELParser::Expression::Model::Annotation
-
#to_s
—
BELParser::Expression::Model::Namespace
-
#to_s
—
BELParser::Expression::Model::Parameter
-
#to_s
—
BELParser::Expression::Model::Statement
-
#to_s
—
BELParser::Expression::Model::Term
-
#to_s
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#to_s
—
BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
#to_s
—
BELParser::Language::Semantics::FunctionDeprecationWarning
-
#to_s
—
BELParser::Language::Semantics::ListFunctionSubjectWarning
-
#to_s
—
BELParser::Language::Semantics::MultipleSubjectObjectWarning
-
#to_s
—
BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
-
#to_s
—
BELParser::Language::Semantics::NonCausalNestedStatementWarning
-
#to_s
—
BELParser::Language::Semantics::NonObjectListWarning
-
#to_s
—
BELParser::Language::Semantics::RelationshipDeprecationWarning
-
#to_s
—
BELParser::Language::Semantics::RelationshipNotMultipleWarning
-
#to_s
—
BELParser::Language::Semantics::SignatureMappingSuccess
-
#to_s
—
BELParser::Language::Semantics::SignatureMappingWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsNilNodeWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsNotNilNodeWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsTypeWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsArgumentLengthWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsMissingNamespaceWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidNamespaceWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsMissingEncodingWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidEncodingWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidFunctionWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidReturnTypeWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidProteinModificationWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidAminoAcidRangeWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticsInvalidSequencePositionWarning
-
#to_s
—
BELParser::Language::Semantics::SemanticMatch
-
#to_s
—
BELParser::Language::Semantics::SemanticsResult
-
#to_s
—
BELParser::Language::Semantics::SemanticsWarning
-
#to_s
—
BELParser::Language::Syntax::SyntaxError
-
#to_s
—
BELParser::Language::Syntax::SyntaxResult
-
#to_s
—
BELParser::Language::Syntax::SyntaxWarning
-
#to_s
—
AST::Node
-
#to_s
—
BELParser::Language::ExpressionValidator::Result
-
#to_s
—
BELParser::Language::Function
-
#to_s
—
BELParser::Language::Relationship
-
#to_s
—
BELParser::Language::Signature
-
#to_s
—
BELParser::Resource::Value
-
#to_sexp
—
AST::Node
-
#to_sym
—
BELParser::Language::Function
-
#to_sym
—
BELParser::Language::Relationship
-
#trace
—
BELParser::Parsers::Tracer
-
#traverse
—
BELParser::Parsers::AST::Node
-
#type
—
BELParser::Expression::Model::Namespace
-
#type_warning
—
BELParser::Language::Semantics::SemanticASTNode
-
#types
—
BELParser::Resource::Dataset
-
#unquote
—
BELParser::Quoting
-
#unquoted?
—
BELParser::Quoting
-
#unset
—
BELParser::Parsers::AST::Sexp
-
#update_pmod
—
BELParser::Language::Version1_0::Upgrades::ProteinModificationTransformation
-
#update_uri_property
—
BELParser::Script::ApplyResourceURI
-
#updated
—
BELParser::Language::Semantics::SemanticASTNode
-
#updated
—
BELParser::Parsers::AST::Node
-
#updated
—
AST::Node
-
#upgrades
—
BELParser::Language::Specification
-
#uri
—
BELParser::Language::Specification
-
#uri
—
BELParser::Parsers::AST::Sexp
-
#uri?
—
BELParser::Expression::Model::Annotation
-
#uri?
—
BELParser::Expression::Model::Namespace
-
#uri?
—
BELParser::Parsers::AST::Domain
-
#uri?
—
BELParser::Resource::ConceptScheme
-
#uri?
—
BELParser::Resource::FileResource
-
#uri?
—
BELParser::Resource::Dataset
-
#uri_reader=
—
BELParser::Expression::Model::Annotation
-
#url
—
BELParser::Parsers::AST::Sexp
-
#url?
—
BELParser::Expression::Model::Annotation
-
#url?
—
BELParser::Expression::Model::Namespace
-
#url?
—
BELParser::Parsers::AST::Domain
-
#url?
—
BELParser::Resource::ConceptScheme
-
#url?
—
BELParser::Resource::FileResource
-
#url?
—
BELParser::Resource::Dataset
-
#url_reader=
—
BELParser::Expression::Model::Annotation
-
#utf8_string
—
BELParser::Parsers::Buffer
-
#valid?
—
BELParser::Expression::Model::Parameter
-
#valid?
—
BELParser::Expression::Model::Statement
-
#valid?
—
BELParser::Expression::Model::Term
-
#valid?
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid?
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid?
—
BELParser::Resource::LRUCache
-
#valid?
—
BELParser::Language::ExpressionValidator::Result
-
#valid_object_signatures
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_object_signatures
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_semantics?
—
BELParser::Language::ExpressionValidator::TermResult
-
#valid_semantics?
—
BELParser::Language::ExpressionValidator::ObservedTermResult
-
#valid_semantics?
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_semantics?
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_semantics?
—
BELParser::Language::ExpressionValidator::Result
-
#valid_signature_mappings
—
BELParser::Language::ExpressionValidator::ParameterResult
-
#valid_signature_mappings
—
BELParser::Language::ExpressionValidator::Result
-
#valid_subject_signatures
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_subject_signatures
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_syntax?
—
BELParser::Language::ExpressionValidator::ObservedTermResult
-
#valid_syntax?
—
BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_syntax?
—
BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_syntax?
—
BELParser::Language::ExpressionValidator::Result
-
#validate
—
BELParser::Language::ExpressionValidator
-
#validate
—
BELParser::Language::ExpressionValidator
-
#validate_200
—
BELParser::Resource::SPARQLReader
-
#validate_allowed_methods
—
BELParser::Resource::SPARQLReader
-
#validate_sparql_endpoint_url
—
BELParser::Resource::SPARQLReader
-
#validate_uri_scheme
—
BELParser::Resource::SPARQLReader
-
#validation
—
BELParser::Expression::Model::Statement
-
#validation
—
BELParser::Expression::Model::Term
-
#value
—
BELParser::Parsers::AST::Parameter
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Parsers::AST::TARGET_NODE
-
#value
—
BELParser::Language::Semantics::Builder
-
#value
—
BELParser::Parsers::AST::Sexp
-
#value=
—
BELParser::Expression::Model::Parameter
-
#value_encoding
—
BELParser::Language::Specification
-
#value_literal
—
BELParser::Language::ApplyNamespaceEncoding
-
#value_patterns
—
BELParser::Language::Semantics::SemanticValue
-
#value_patterns
—
BELParser::Language::Semantics::SemanticIdentifier
-
#variadic_arguments
—
BELParser::Language::Semantics::Builder
-
#variadic_arguments?
—
BELParser::Language::Semantics::SemanticTerm
-
#version
—
BELParser::Language::Specification
-
#warnings
—
BELParser::Script::NanopubMapper
-
#write
—
BEL::Translator::Plugins::BelScript::BelScriptTranslator