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Class and Module Index
AST
AST::Node
AST::Processor
AST::Processor::Mixin
AST::Sexp
BEL
BEL::Translator
BEL::Translator::Plugins
BEL::Translator::Plugins::BelScript
BEL::Translator::Plugins::BelScript::BelCitationSerialization
BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
BEL::Translator::Plugins::BelScript::BelScriptTranslator
BEL::Translator::Plugins::BelScript::BelTopDownSerialization
BEL::Translator::Plugins::BelScript::NanopubSerialization
BEL::Translator::Plugins::BelScript::Reader
BEL::Translator::Plugins::BelScript::Writer
BELParser
BELParser::ASTFilter
BELParser::ASTGenerator
BELParser::Completion
BELParser::Completion::AllFunctionArgumentCompleter
BELParser::Completion::AllFunctionCompleter
BELParser::Completion::AllFunctionTermCompleter
BELParser::Completion::AllNamespacePrefixArgumentCompleter
BELParser::Completion::AllNamespacePrefixCompleter
BELParser::Completion::AllRelationshipCompleter
BELParser::Completion::BaseCompleter
BELParser::Completion::ExactMatchParameterCompleter
BELParser::Completion::FunctionArgumentCompleter
BELParser::Completion::FunctionCompleter
BELParser::Completion::FunctionTermCompleter
BELParser::Completion::MergeCompletion
BELParser::Completion::NamespacePrefixArgumentCompleter
BELParser::Completion::NamespacePrefixCompleter
BELParser::Completion::QuotedValue
BELParser::Completion::RelationshipCompleter
BELParser::Completion::WildcardMatchParameterCompleter
BELParser::Expression
BELParser::Expression::Filter
BELParser::Expression::Model
BELParser::Expression::Model::Annotation
BELParser::Expression::Model::Converters
BELParser::Expression::Model::Namespace
BELParser::Expression::Model::Parameter
BELParser::Expression::Model::Statement
BELParser::Expression::Model::Term
BELParser::Expression::Parser
BELParser::Expression::Validator
BELParser::Language
BELParser::Language::AminoAcid
BELParser::Language::ApplyDefaultNamespace
BELParser::Language::ApplyNamespaceEncoding
BELParser::Language::BaseSpecification
BELParser::Language::CovalentProteinModification
BELParser::Language::EXP_VALIDATOR
BELParser::Language::ExpressionValidator
BELParser::Language::ExpressionValidator::NestedStatementResult
BELParser::Language::ExpressionValidator::ObservedTermResult
BELParser::Language::ExpressionValidator::ParameterResult
BELParser::Language::ExpressionValidator::Result
BELParser::Language::ExpressionValidator::SimpleStatementResult
BELParser::Language::ExpressionValidator::TermResult
BELParser::Language::Function
BELParser::Language::Relationship
BELParser::Language::Semantics
BELParser::Language::Semantics::Builder
BELParser::Language::Semantics::DeeplyNestedStatement
BELParser::Language::Semantics::DeeplyNestedStatementWarning
BELParser::Language::Semantics::FunctionDeprecation
BELParser::Language::Semantics::FunctionDeprecationWarning
BELParser::Language::Semantics::ListFunctionSubject
BELParser::Language::Semantics::ListFunctionSubjectWarning
BELParser::Language::Semantics::MultipleSubjectObject
BELParser::Language::Semantics::MultipleSubjectObjectWarning
BELParser::Language::Semantics::NestedStatementWithoutObject
BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
BELParser::Language::Semantics::NonCausalNestedStatement
BELParser::Language::Semantics::NonCausalNestedStatementWarning
BELParser::Language::Semantics::NonObjectList
BELParser::Language::Semantics::NonObjectListWarning
BELParser::Language::Semantics::RelationshipDeprecation
BELParser::Language::Semantics::RelationshipDeprecationWarning
BELParser::Language::Semantics::RelationshipNotListable
BELParser::Language::Semantics::RelationshipNotMultipleWarning
BELParser::Language::Semantics::SemanticASTNode
BELParser::Language::Semantics::SemanticAminoAcidOf
BELParser::Language::Semantics::SemanticAny
BELParser::Language::Semantics::SemanticArgument
BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
BELParser::Language::Semantics::SemanticEncodingOf
BELParser::Language::Semantics::SemanticFunction
BELParser::Language::Semantics::SemanticFunctionOf
BELParser::Language::Semantics::SemanticHasEncoding
BELParser::Language::Semantics::SemanticHasNamespace
BELParser::Language::Semantics::SemanticIdentifier
BELParser::Language::Semantics::SemanticIsAminoAcidRange
BELParser::Language::Semantics::SemanticIsNil
BELParser::Language::Semantics::SemanticIsSequencePosition
BELParser::Language::Semantics::SemanticMatch
BELParser::Language::Semantics::SemanticNamespaceOf
BELParser::Language::Semantics::SemanticParameter
BELParser::Language::Semantics::SemanticPrefix
BELParser::Language::Semantics::SemanticReturnTypeOf
BELParser::Language::Semantics::SemanticStatement
BELParser::Language::Semantics::SemanticTerm
BELParser::Language::Semantics::SemanticValue
BELParser::Language::Semantics::SemanticVariadicArguments
BELParser::Language::Semantics::SemanticsArgumentLengthWarning
BELParser::Language::Semantics::SemanticsFunction
BELParser::Language::Semantics::SemanticsInvalidAminoAcidRangeWarning
BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning
BELParser::Language::Semantics::SemanticsInvalidEncodingWarning
BELParser::Language::Semantics::SemanticsInvalidFunctionWarning
BELParser::Language::Semantics::SemanticsInvalidNamespaceWarning
BELParser::Language::Semantics::SemanticsInvalidProteinModificationWarning
BELParser::Language::Semantics::SemanticsInvalidReturnTypeWarning
BELParser::Language::Semantics::SemanticsInvalidSequencePositionWarning
BELParser::Language::Semantics::SemanticsMissingEncodingWarning
BELParser::Language::Semantics::SemanticsMissingNamespaceWarning
BELParser::Language::Semantics::SemanticsNilNodeWarning
BELParser::Language::Semantics::SemanticsNotNilNodeWarning
BELParser::Language::Semantics::SemanticsResult
BELParser::Language::Semantics::SemanticsTypeWarning
BELParser::Language::Semantics::SemanticsWarning
BELParser::Language::Semantics::SignatureMapping
BELParser::Language::Semantics::SignatureMappingSuccess
BELParser::Language::Semantics::SignatureMappingWarning
BELParser::Language::Semantics::Valid
BELParser::Language::Signature
BELParser::Language::Specification
BELParser::Language::Syntax
BELParser::Language::Syntax::InvalidFunction
BELParser::Language::Syntax::InvalidFunctionSyntaxError
BELParser::Language::Syntax::InvalidRelationship
BELParser::Language::Syntax::InvalidRelationshipSyntaxError
BELParser::Language::Syntax::SyntaxError
BELParser::Language::Syntax::SyntaxFunction
BELParser::Language::Syntax::SyntaxResult
BELParser::Language::Syntax::SyntaxWarning
BELParser::Language::Syntax::UndefinedNamespace
BELParser::Language::Syntax::UndefinedNamespaceError
BELParser::Language::Syntax::UndefinedNamespaceValue
BELParser::Language::Syntax::UndefinedNamespaceValueWarning
BELParser::Language::Syntax::Valid
BELParser::Language::TermTransformation
BELParser::Language::Version1_0
BELParser::Language::Version1_0::Functions
BELParser::Language::Version1_0::Functions::Abundance
BELParser::Language::Version1_0::Functions::Abundance::Signatures
BELParser::Language::Version1_0::Functions::Abundance::Signatures::AbundanceSignature
BELParser::Language::Version1_0::Functions::BiologicalProcess
BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures
BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
BELParser::Language::Version1_0::Functions::CatalyticActivity
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::CellSecretion
BELParser::Language::Version1_0::Functions::CellSecretion::Signatures
BELParser::Language::Version1_0::Functions::CellSecretion::Signatures::CellSecretionSignature
BELParser::Language::Version1_0::Functions::CellSurfaceExpression
BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures
BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
BELParser::Language::Version1_0::Functions::ChaperoneActivity
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::ComplexAbundance
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::CompositeAbundance
BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures
BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
BELParser::Language::Version1_0::Functions::Degradation
BELParser::Language::Version1_0::Functions::Degradation::Signatures
BELParser::Language::Version1_0::Functions::Degradation::Signatures::DegradationSignature
BELParser::Language::Version1_0::Functions::Fusion
BELParser::Language::Version1_0::Functions::Fusion::Signatures
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceSignature
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceWithBreakpointsSignature
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceWithBreakpointsSignature
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceSignature
BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceWithBreakpointsSignature
BELParser::Language::Version1_0::Functions::GTPBoundActivity
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::GeneAbundance
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
BELParser::Language::Version1_0::Functions::KinaseActivity
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::List
BELParser::Language::Version1_0::Functions::List::Signatures
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceSignature
BELParser::Language::Version1_0::Functions::MicroRNAAbundance
BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures
BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
BELParser::Language::Version1_0::Functions::MolecularActivity
BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures
BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures::MolecularActivityOfAbundanceSignature
BELParser::Language::Version1_0::Functions::Pathology
BELParser::Language::Version1_0::Functions::Pathology::Signatures
BELParser::Language::Version1_0::Functions::Pathology::Signatures::PathologySignature
BELParser::Language::Version1_0::Functions::PeptidaseActivity
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::PhosphataseActivity
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::Products
BELParser::Language::Version1_0::Functions::Products::Signatures
BELParser::Language::Version1_0::Functions::Products::Signatures::ProductsSignature
BELParser::Language::Version1_0::Functions::ProteinAbundance
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithSubstitutionSignature
BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithTruncationSignature
BELParser::Language::Version1_0::Functions::ProteinModification
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoPositionSignature
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoSignature
BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentSignature
BELParser::Language::Version1_0::Functions::RNAAbundance
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
BELParser::Language::Version1_0::Functions::Reactants
BELParser::Language::Version1_0::Functions::Reactants::Signatures
BELParser::Language::Version1_0::Functions::Reactants::Signatures::ReactantsSignature
BELParser::Language::Version1_0::Functions::Reaction
BELParser::Language::Version1_0::Functions::Reaction::Signatures
BELParser::Language::Version1_0::Functions::Reaction::Signatures::ReactionSignature
BELParser::Language::Version1_0::Functions::RibosylationActivity
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::Substitution
BELParser::Language::Version1_0::Functions::Substitution::Signatures
BELParser::Language::Version1_0::Functions::Substitution::Signatures::SubstitutionWithReferencePositionVariantSignature
BELParser::Language::Version1_0::Functions::TranscriptionalActivity
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::Translocation
BELParser::Language::Version1_0::Functions::Translocation::Signatures
BELParser::Language::Version1_0::Functions::Translocation::Signatures::TranslocationSignature
BELParser::Language::Version1_0::Functions::TransportActivity
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfComplexAbundanceSignature
BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfProteinAbundanceSignature
BELParser::Language::Version1_0::Functions::Truncation
BELParser::Language::Version1_0::Functions::Truncation::Signatures
BELParser::Language::Version1_0::Functions::Truncation::Signatures::TruncationWithPositionSignature
BELParser::Language::Version1_0::Relationships
BELParser::Language::Version1_0::Relationships::ActsIn
BELParser::Language::Version1_0::Relationships::Analogous
BELParser::Language::Version1_0::Relationships::Association
BELParser::Language::Version1_0::Relationships::BiomarkerFor
BELParser::Language::Version1_0::Relationships::CausesNoChange
BELParser::Language::Version1_0::Relationships::Decreases
BELParser::Language::Version1_0::Relationships::DirectlyDecreases
BELParser::Language::Version1_0::Relationships::DirectlyIncreases
BELParser::Language::Version1_0::Relationships::HasComponent
BELParser::Language::Version1_0::Relationships::HasComponents
BELParser::Language::Version1_0::Relationships::HasMember
BELParser::Language::Version1_0::Relationships::HasMembers
BELParser::Language::Version1_0::Relationships::HasModification
BELParser::Language::Version1_0::Relationships::HasProduct
BELParser::Language::Version1_0::Relationships::HasVariant
BELParser::Language::Version1_0::Relationships::Includes
BELParser::Language::Version1_0::Relationships::Increases
BELParser::Language::Version1_0::Relationships::IsA
BELParser::Language::Version1_0::Relationships::NegativeCorrelation
BELParser::Language::Version1_0::Relationships::Orthologous
BELParser::Language::Version1_0::Relationships::PositiveCorrelation
BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
BELParser::Language::Version1_0::Relationships::ReactantIn
BELParser::Language::Version1_0::Relationships::SubProcessOf
BELParser::Language::Version1_0::Relationships::TranscribedTo
BELParser::Language::Version1_0::Relationships::TranslatedTo
BELParser::Language::Version1_0::Relationships::Translocates
BELParser::Language::Version1_0::ReturnTypes
BELParser::Language::Version1_0::ReturnTypes::Abundance
BELParser::Language::Version1_0::ReturnTypes::Any
BELParser::Language::Version1_0::ReturnTypes::BiologicalProcess
BELParser::Language::Version1_0::ReturnTypes::CatalyticActivity
BELParser::Language::Version1_0::ReturnTypes::ChaperoneActivity
BELParser::Language::Version1_0::ReturnTypes::ComplexAbundance
BELParser::Language::Version1_0::ReturnTypes::Fusion
BELParser::Language::Version1_0::ReturnTypes::GTPBoundActivity
BELParser::Language::Version1_0::ReturnTypes::GeneAbundance
BELParser::Language::Version1_0::ReturnTypes::KinaseActivity
BELParser::Language::Version1_0::ReturnTypes::List
BELParser::Language::Version1_0::ReturnTypes::MicroRNAAbundance
BELParser::Language::Version1_0::ReturnTypes::MolecularActivity
BELParser::Language::Version1_0::ReturnTypes::Pathology
BELParser::Language::Version1_0::ReturnTypes::PeptidaseActivity
BELParser::Language::Version1_0::ReturnTypes::PhosphataseActivity
BELParser::Language::Version1_0::ReturnTypes::Products
BELParser::Language::Version1_0::ReturnTypes::ProteinAbundance
BELParser::Language::Version1_0::ReturnTypes::ProteinModification
BELParser::Language::Version1_0::ReturnTypes::RNAAbundance
BELParser::Language::Version1_0::ReturnTypes::Reactants
BELParser::Language::Version1_0::ReturnTypes::RibosylationActivity
BELParser::Language::Version1_0::ReturnTypes::Substitution
BELParser::Language::Version1_0::ReturnTypes::TranscriptionalActivity
BELParser::Language::Version1_0::ReturnTypes::TransportActivity
BELParser::Language::Version1_0::ReturnTypes::Truncation
BELParser::Language::Version1_0::Specification
BELParser::Language::Version1_0::Upgrades
BELParser::Language::Version1_0::Upgrades::ActivityTransformation
BELParser::Language::Version1_0::Upgrades::FusionTransformation
BELParser::Language::Version1_0::Upgrades::ProteinModificationTransformation
BELParser::Language::Version1_0::Upgrades::TranslocationTransformation
BELParser::Language::Version1_0::Upgrades::VariationTransformation
BELParser::Language::Version1_0::ValueEncodings
BELParser::Language::Version1_0::ValueEncodings::Abundance
BELParser::Language::Version1_0::ValueEncodings::Any
BELParser::Language::Version1_0::ValueEncodings::BiologicalProcess
BELParser::Language::Version1_0::ValueEncodings::ComplexAbundance
BELParser::Language::Version1_0::ValueEncodings::GeneAbundance
BELParser::Language::Version1_0::ValueEncodings::MicroRNAAbundance
BELParser::Language::Version1_0::ValueEncodings::Pathology
BELParser::Language::Version1_0::ValueEncodings::ProteinAbundance
BELParser::Language::Version1_0::ValueEncodings::RNAAbundance
BELParser::Language::Version2_0
BELParser::Language::Version2_0::Functions
BELParser::Language::Version2_0::Functions::Abundance
BELParser::Language::Version2_0::Functions::Abundance::Signatures
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceSignature
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithMolecularActivitySignature
BELParser::Language::Version2_0::Functions::Activity
BELParser::Language::Version2_0::Functions::Activity::Signatures
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivitySignature
BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivityWithSpecificActivityTypeSignature
BELParser::Language::Version2_0::Functions::BiologicalProcess
BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures
BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
BELParser::Language::Version2_0::Functions::CellSecretion
BELParser::Language::Version2_0::Functions::CellSecretion::Signatures
BELParser::Language::Version2_0::Functions::CellSecretion::Signatures::CellSecretionSignature
BELParser::Language::Version2_0::Functions::CellSurfaceExpression
BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures
BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
BELParser::Language::Version2_0::Functions::ComplexAbundance
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::CompositeAbundance
BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures
BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
BELParser::Language::Version2_0::Functions::Degradation
BELParser::Language::Version2_0::Functions::Degradation::Signatures
BELParser::Language::Version2_0::Functions::Degradation::Signatures::DegradationSignature
BELParser::Language::Version2_0::Functions::Fragment
BELParser::Language::Version2_0::Functions::Fragment::Signatures
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnyDescriptorSignature
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnySignature
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeDescriptorSignature
BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeSignature
BELParser::Language::Version2_0::Functions::FromLocation
BELParser::Language::Version2_0::Functions::FromLocation::Signatures
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationAnySignature
BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationSignature
BELParser::Language::Version2_0::Functions::Fusion
BELParser::Language::Version2_0::Functions::Fusion::Signatures
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithGeneEncodingSignature
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithProteinEncodingSignature
BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithRNAEncodingSignature
BELParser::Language::Version2_0::Functions::GeneAbundance
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithVariantSignature
BELParser::Language::Version2_0::Functions::List
BELParser::Language::Version2_0::Functions::List::Signatures
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceSignature
BELParser::Language::Version2_0::Functions::Location
BELParser::Language::Version2_0::Functions::Location::Signatures
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationAnySignature
BELParser::Language::Version2_0::Functions::Location::Signatures::LocationSignature
BELParser::Language::Version2_0::Functions::MicroRNAAbundance
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithVariantSignature
BELParser::Language::Version2_0::Functions::MolecularActivity
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivityAnySignature
BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivitySignature
BELParser::Language::Version2_0::Functions::Pathology
BELParser::Language::Version2_0::Functions::Pathology::Signatures
BELParser::Language::Version2_0::Functions::Pathology::Signatures::PathologySignature
BELParser::Language::Version2_0::Functions::Products
BELParser::Language::Version2_0::Functions::Products::Signatures
BELParser::Language::Version2_0::Functions::Products::Signatures::ProductsSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFragmentSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithVariantSignature
BELParser::Language::Version2_0::Functions::ProteinModification
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoPositionSignature
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoSignature
BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeSignature
BELParser::Language::Version2_0::Functions::RNAAbundance
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithLocationSignature
BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithVariantSignature
BELParser::Language::Version2_0::Functions::Reactants
BELParser::Language::Version2_0::Functions::Reactants::Signatures
BELParser::Language::Version2_0::Functions::Reactants::Signatures::ReactantsSignature
BELParser::Language::Version2_0::Functions::Reaction
BELParser::Language::Version2_0::Functions::Reaction::Signatures
BELParser::Language::Version2_0::Functions::Reaction::Signatures::ReactionSignature
BELParser::Language::Version2_0::Functions::ToLocation
BELParser::Language::Version2_0::Functions::ToLocation::Signatures
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationAnySignature
BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationSignature
BELParser::Language::Version2_0::Functions::Translocation
BELParser::Language::Version2_0::Functions::Translocation::Signatures
BELParser::Language::Version2_0::Functions::Translocation::Signatures::TranslocationSignature
BELParser::Language::Version2_0::Functions::Variant
BELParser::Language::Version2_0::Functions::Variant::Signatures
BELParser::Language::Version2_0::Functions::Variant::Signatures::VariantSignature
BELParser::Language::Version2_0::Relationships
BELParser::Language::Version2_0::Relationships::ActsIn
BELParser::Language::Version2_0::Relationships::Analogous
BELParser::Language::Version2_0::Relationships::Association
BELParser::Language::Version2_0::Relationships::BiomarkerFor
BELParser::Language::Version2_0::Relationships::CausesNoChange
BELParser::Language::Version2_0::Relationships::Decreases
BELParser::Language::Version2_0::Relationships::DirectlyDecreases
BELParser::Language::Version2_0::Relationships::DirectlyIncreases
BELParser::Language::Version2_0::Relationships::HasComponent
BELParser::Language::Version2_0::Relationships::HasComponents
BELParser::Language::Version2_0::Relationships::HasMember
BELParser::Language::Version2_0::Relationships::HasMembers
BELParser::Language::Version2_0::Relationships::HasModification
BELParser::Language::Version2_0::Relationships::HasProduct
BELParser::Language::Version2_0::Relationships::HasVariant
BELParser::Language::Version2_0::Relationships::Includes
BELParser::Language::Version2_0::Relationships::Increases
BELParser::Language::Version2_0::Relationships::IsA
BELParser::Language::Version2_0::Relationships::NegativeCorrelation
BELParser::Language::Version2_0::Relationships::Orthologous
BELParser::Language::Version2_0::Relationships::PositiveCorrelation
BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
BELParser::Language::Version2_0::Relationships::ReactantIn
BELParser::Language::Version2_0::Relationships::Regulates
BELParser::Language::Version2_0::Relationships::SubProcessOf
BELParser::Language::Version2_0::Relationships::TranscribedTo
BELParser::Language::Version2_0::Relationships::TranslatedTo
BELParser::Language::Version2_0::Relationships::Translocates
BELParser::Language::Version2_0::ReturnTypes
BELParser::Language::Version2_0::ReturnTypes::Abundance
BELParser::Language::Version2_0::ReturnTypes::Activity
BELParser::Language::Version2_0::ReturnTypes::Any
BELParser::Language::Version2_0::ReturnTypes::BiologicalProcess
BELParser::Language::Version2_0::ReturnTypes::ComplexAbundance
BELParser::Language::Version2_0::ReturnTypes::Fragment
BELParser::Language::Version2_0::ReturnTypes::FromLocation
BELParser::Language::Version2_0::ReturnTypes::Fusion
BELParser::Language::Version2_0::ReturnTypes::GeneAbundance
BELParser::Language::Version2_0::ReturnTypes::List
BELParser::Language::Version2_0::ReturnTypes::Location
BELParser::Language::Version2_0::ReturnTypes::MicroRNAAbundance
BELParser::Language::Version2_0::ReturnTypes::MolecularActivity
BELParser::Language::Version2_0::ReturnTypes::Pathology
BELParser::Language::Version2_0::ReturnTypes::Products
BELParser::Language::Version2_0::ReturnTypes::ProteinAbundance
BELParser::Language::Version2_0::ReturnTypes::ProteinModification
BELParser::Language::Version2_0::ReturnTypes::RNAAbundance
BELParser::Language::Version2_0::ReturnTypes::Reactants
BELParser::Language::Version2_0::ReturnTypes::ToLocation
BELParser::Language::Version2_0::ReturnTypes::Variant
BELParser::Language::Version2_0::Specification
BELParser::Language::Version2_0::Upgrades
BELParser::Language::Version2_0::Upgrades::Transformation
BELParser::Language::Version2_0::ValueEncodings
BELParser::Language::Version2_0::ValueEncodings::Abundance
BELParser::Language::Version2_0::ValueEncodings::Activity
BELParser::Language::Version2_0::ValueEncodings::Any
BELParser::Language::Version2_0::ValueEncodings::BiologicalProcess
BELParser::Language::Version2_0::ValueEncodings::ComplexAbundance
BELParser::Language::Version2_0::ValueEncodings::GeneAbundance
BELParser::Language::Version2_0::ValueEncodings::Location
BELParser::Language::Version2_0::ValueEncodings::MicroRNAAbundance
BELParser::Language::Version2_0::ValueEncodings::Pathology
BELParser::Language::Version2_0::ValueEncodings::ProteinAbundance
BELParser::Language::Version2_0::ValueEncodings::ProteinModification
BELParser::Language::Version2_0::ValueEncodings::RNAAbundance
BELParser::Levenshtein
BELParser::LineMapping
BELParser::Parsers
BELParser::Parsers::AST
BELParser::Parsers::AST::AnnotationDefinition
BELParser::Parsers::AST::Argument
BELParser::Parsers::AST::BlankLine
BELParser::Parsers::AST::Comment
BELParser::Parsers::AST::CommentLine
BELParser::Parsers::AST::DocumentProperty
BELParser::Parsers::AST::Domain
BELParser::Parsers::AST::Function
BELParser::Parsers::AST::Identifier
BELParser::Parsers::AST::Keyword
BELParser::Parsers::AST::LIST_NODE
BELParser::Parsers::AST::LIST_NODE
BELParser::Parsers::AST::LIST_NODE
BELParser::Parsers::AST::List
BELParser::Parsers::AST::ListItem
BELParser::Parsers::AST::MultiIdentifier
BELParser::Parsers::AST::Name
BELParser::Parsers::AST::NamespaceDefinition
BELParser::Parsers::AST::NestedStatement
BELParser::Parsers::AST::Node
BELParser::Parsers::AST::Object
BELParser::Parsers::AST::ObservedTerm
BELParser::Parsers::AST::Parameter
BELParser::Parsers::AST::Pattern
BELParser::Parsers::AST::Prefix
BELParser::Parsers::AST::Relationship
BELParser::Parsers::AST::Set
BELParser::Parsers::AST::Sexp
BELParser::Parsers::AST::SimpleStatement
BELParser::Parsers::AST::Statement
BELParser::Parsers::AST::String
BELParser::Parsers::AST::Subject
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::TARGET_NODE
BELParser::Parsers::AST::Term
BELParser::Parsers::AST::Unset
BELParser::Parsers::AST::Uri
BELParser::Parsers::AST::Url
BELParser::Parsers::AST::Value
BELParser::Parsers::BELScript
BELParser::Parsers::BELScript::DefineAnnotation
BELParser::Parsers::BELScript::DefineAnnotation::Parser
BELParser::Parsers::BELScript::DefineNamespace
BELParser::Parsers::BELScript::DefineNamespace::Parser
BELParser::Parsers::BELScript::Set
BELParser::Parsers::BELScript::Set::Parser
BELParser::Parsers::BELScript::SetDocument
BELParser::Parsers::BELScript::SetDocument::Parser
BELParser::Parsers::BELScript::Unset
BELParser::Parsers::BELScript::Unset::Parser
BELParser::Parsers::Buffer
BELParser::Parsers::Common
BELParser::Parsers::Common::BlankLine
BELParser::Parsers::Common::BlankLine::Parser
BELParser::Parsers::Common::CommentLine
BELParser::Parsers::Common::CommentLine::Parser
BELParser::Parsers::Common::Function
BELParser::Parsers::Common::Function::Parser
BELParser::Parsers::Common::Identifier
BELParser::Parsers::Common::Identifier::Parser
BELParser::Parsers::Common::List
BELParser::Parsers::Common::List::Parser
BELParser::Parsers::Common::MultiIdentifier
BELParser::Parsers::Common::MultiIdentifier::Parser
BELParser::Parsers::Common::String
BELParser::Parsers::Common::String::Parser
BELParser::Parsers::Expression
BELParser::Parsers::Expression::Comment
BELParser::Parsers::Expression::Comment::Parser
BELParser::Parsers::Expression::NestedStatement
BELParser::Parsers::Expression::NestedStatement::Parser
BELParser::Parsers::Expression::ObservedTerm
BELParser::Parsers::Expression::ObservedTerm::Parser
BELParser::Parsers::Expression::Parameter
BELParser::Parsers::Expression::Parameter::Parser
BELParser::Parsers::Expression::Relationship
BELParser::Parsers::Expression::Relationship::Parser
BELParser::Parsers::Expression::SimpleStatement
BELParser::Parsers::Expression::SimpleStatement::Parser
BELParser::Parsers::Expression::StatementAutocomplete
BELParser::Parsers::Expression::StatementAutocomplete::Parser
BELParser::Parsers::Expression::Term
BELParser::Parsers::Expression::Term::Parser
BELParser::Parsers::Serializer
BELParser::Parsers::Tracer
BELParser::Quoting
BELParser::Resource
BELParser::Resource::Concept
BELParser::Resource::ConceptScheme
BELParser::Resource::Dataset
BELParser::Resource::EagerReader
BELParser::Resource::EagerSPARQLReader
BELParser::Resource::FileResource
BELParser::Resource::FileResourceValue
BELParser::Resource::JenaTDBReader
BELParser::Resource::JenaTDBReader::Concept
BELParser::Resource::JenaTDBReader::ConceptScheme
BELParser::Resource::LRUCache
BELParser::Resource::LRUReader
BELParser::Resource::Reader
BELParser::Resource::ResourceURLReader
BELParser::Resource::SPARQLReader
BELParser::Resource::Value
BELParser::Resources
BELParser::Script
BELParser::Script::ApplyResourceURI
BELParser::Script::Filter
BELParser::Script::FirstNode
BELParser::Script::Keyword
BELParser::Script::NanopubMapper
BELParser::Script::Parser
BELParser::Script::State
BELParser::Script::State::AnnotationDefinition
BELParser::Script::State::BELVersion
BELParser::Script::State::DocumentProperty
BELParser::Script::State::NamespaceDefinition
BELParser::Script::State::Set
BELParser::Script::State::Unset
BELParser::Script::StateAggregator
BELParser::Script::StateFunction
BELParser::Script::Syntax
BELParser::Script::Syntax::ExpressionValidation
BELParser::Script::Syntax::InvalidRegexPattern
BELParser::Script::Syntax::InvalidRegexPatternError
BELParser::Script::Syntax::UndefinedAnnotation
BELParser::Script::Syntax::UndefinedAnnotationError
BELParser::Script::Syntax::UndefinedAnnotationValue
BELParser::Script::Syntax::UndefinedAnnotationValueWarning
BELParser::Script::Syntax::UnresolvableNamespace
BELParser::Script::Syntax::UnresolvableNamespaceError
BELParser::Script::Syntax::UnsupportedBELVersion
BELParser::Script::Syntax::UnsupportedBELVersionWarning
BELParser::Script::Validator
BELParser::Version
LINE
NonblockingIOWrapper
Object
This is the API documentation for bel_parser-1.1.6 Documentation.