class Bio::SQL::Location
Public Instance Methods
sequence()
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# File lib/bio/io/biosql/ar-biosql.rb 117 def sequence 118 seq="" 119 unless self.seqfeature.bioentry.biosequence.seq.nil? 120 seq=Bio::Sequence::NA.new(self.seqfeature.bioentry.biosequence.seq[start_pos-1..end_pos-1]) 121 seq.reverse_complement! if strand==-1 122 end 123 return seq 124 end
to_s()
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# File lib/bio/io/biosql/ar-biosql.rb 108 def to_s 109 if strand==-1 110 str="complement("+start_pos.to_s+".."+end_pos.to_s+")" 111 else 112 str=start_pos.to_s+".."+end_pos.to_s 113 end 114 return str 115 end