class Bio::FastQC::Data
Public Class Methods
filenotfound(file)
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# File lib/bio/fastqc/data.rb, line 34 def filenotfound(file) raise "FastQC data file fastqc_data.txt not found, input file: #{file}" end
read(file)
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# File lib/bio/fastqc/data.rb, line 8 def read(file) read_zipfile(file) rescue Zip::Error read_flatfile(file) rescue Errno::EISDIR read_dir(file) end
read_dir(file)
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# File lib/bio/fastqc/data.rb, line 28 def read_dir(file) open(File.join(file, "fastqc_data.txt")).read rescue Errno::ENOENT filenotfound(file) end
read_flatfile(file)
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# File lib/bio/fastqc/data.rb, line 24 def read_flatfile(file) open(file).read end
read_zipfile(file)
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# File lib/bio/fastqc/data.rb, line 16 def read_zipfile(file) Zip::File.open(file) do |zipfile| d = zipfile.glob('*/fastqc_data.txt').first filenotfound(file) if !d d.get_input_stream.read end end