bio-fastqc¶ ↑
A ruby parser for FastQC data.
Reqruirements¶ ↑
Ruby 2.0 or later
Installation¶ ↑
gem install bio-fastqc
Usage¶ ↑
require 'bio-fastqc' # extract data from zipfile zip_file = "/path/to/data_fastqc.zip" data = Bio::FastQC::Data.read(zip_file) parser = Bio::FastQC::Parser.new(data) parser.summary
Parse FastQC data as json format by command line tool:
$ fastqc-util parse /path/to/data_fastqc.zip
Project home page¶ ↑
Information on the source tree, documentation, examples, issues and how to contribute, see
github.com/inutano/bioruby-fastqc
The BioRuby community is on IRC server: irc.freenode.org, channel: bioruby.
Cite¶ ↑
If you use this software, please cite one of
Biogems.info¶ ↑
This Biogem is published at (biogems.info/index.html#bio-fastqc)
Copyright¶ ↑
Copyright © 2015 Tazro Inutano Ohta. See LICENSE.txt for further details.