{

"resourceType": "Sequence",
"id": "fda-vcf-comparison",
"text": {
  "status": "generated",
  "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: fda-vcf-comparison</p><p><b>coordinateSystem</b>: 1</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000001.11 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000001.11' = 'NC_000001.11)</span></td><td>1</td><td>10453</td><td>101770080</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>13116</td><td>13117</td><td>T</td><td>G</td></tr></table><h3>Qualities</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>StandardSequence</b></td><td><b>Start</b></td><td><b>End</b></td><td><b>Score</b></td><td><b>Method</b></td><td><b>TruthTP</b></td><td><b>TruthFN</b></td><td><b>QueryFP</b></td><td><b>GtFP</b></td><td><b>Precision</b></td><td><b>FScore</b></td></tr><tr><td>*</td><td>unknown</td><td>file-BkZxBZ00bpJVk2q6x43b1YBx <span>(Details : {https://precision.fda.gov/files/ code 'file-BkZxBZ00bpJVk2q6x43b1YBx' = 'file-BkZxBZ00bpJVk2q6x43b1YBx)</span></td><td>10453</td><td>101770080</td><td>5.000</td><td>VCF Comparison <span>(Details : {https://precision.fda.gov/apps/ code 'app-BqB9XZ8006ZZ2g5KzGXP3fpq' = 'app-BqB9XZ8006ZZ2g5KzGXP3fpq)</span></td><td>129481</td><td>3168</td><td>1507</td><td>2186</td><td>0.9885</td><td>0.9823</td></tr></table><h3>Repositories</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Url</b></td><td><b>Name</b></td></tr><tr><td>*</td><td>login</td><td><a>https://precision.fda.gov/comparisons/1850</a></td><td>FDA</td></tr></table></div>"
},
"coordinateSystem": 1,
"patient": {
  "reference": "Patient/example"
},
"referenceSeq": {
  "referenceSeqId": {
    "coding": [
      {
        "system": "http://www.ncbi.nlm.nih.gov/nuccore",
        "code": "NC_000001.11"
      }
    ]
  },
  "strand": 1,
  "windowStart": 10453,
  "windowEnd": 101770080
},
"variant": [
  {
    "start": 13116,
    "end": 13117,
    "observedAllele": "T",
    "referenceAllele": "G"
  }
],
"quality": [
  {
    "type": "unknown",
    "standardSequence": {
      "coding": [
        {
          "system": "https://precision.fda.gov/files/",
          "code": "file-BkZxBZ00bpJVk2q6x43b1YBx"
        }
      ]
    },
    "start": 10453,
    "end": 101770080,
    "score": {
      "value": 5.000
    },
    "method": {
      "coding": [
        {
          "system": "https://precision.fda.gov/apps/",
          "code": "app-BqB9XZ8006ZZ2g5KzGXP3fpq"
        }
      ],
      "text": "VCF Comparison"
    },
    "truthTP": 129481,
    "truthFN": 3168,
    "queryFP": 1507,
    "gtFP": 2186,
    "precision": 0.9885,
    "fScore": 0.9823
  }
],
"repository": [
  {
    "type": "login",
    "url": "https://precision.fda.gov/comparisons/1850",
    "name": "FDA"
  }
]

}