<!– ============================================================= –> <!– MODULE: Journal Archiving and Interchange DTD - OASIS MOD –> <!– VERSION: 2.3 –> <!– DATE: April 2007 –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD Journal Archiving with OASIS Tables v2.3 20070813//EN”

Delivered as file "archive-OASIS.dtd"                         -->

<!– ============================================================= –>

<!– ============================================================= –> <!– MODULES OF MODULES INVOKED –> <!– ============================================================= –>

<!– MODULE TO NAME DTD-SPECIFIC MODULES –> <!– Names all DTD-specific external modules –> <!ENTITY % archive-OASIScustom-modules.ent PUBLIC

“-//NLM//DTD Journal Archiving DTD-OASIS Specific Modules v2.3 20070813//EN” “archive-OASIScustom-modules.ent” > %archive-OASIScustom-modules.ent;

<!– MODULE TO NAME THE MODULES –> <!– Declares all the external modules that are

part of the modular Journal Archiving and 
Interchange DTD Suite library. Thus it does
NOT declare itself; the DTD-specific 
module-of-modules; any DTD-specific class,
mix, or model over-ride modules; or any new
new content modules specific to this DTD.
Those are declared in the DTD-specific
module of modules.
   Since this module declares but does not
invoke modules, this DTD then invokes any
modules it uses by referencing the external 
Parameter Entities defined in the Module of
Modules. To include a set of elements (such 
as all the lists or the MathML elements) this 
module defines the external Parameter Entity
for the module(s) that contains the MathML
declarations and the DTD references that 
entity.                                    -->

<!ENTITY % modules.ent PUBLIC

“-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v2.3 20070202//EN” “modules.ent” > %modules.ent;

<!– ============================================================= –> <!– CUSTOMIZATION MODULES INVOKED –> <!– Note: These modules must be called after –> <!– all Module of Modules but before any other –> <!– modules. Unlike any other grouping, order –> <!– of these modules matters. –> <!– ============================================================= –>

<!– DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE –> <!– Names the module that holds the DTD-specific

class definitions for the Journal Archiving
and Interchange DTD that over-rides the Suite 
defaults.                
(Defined in %archive-OASIScustom-modules.ent;)   -->

%archive-OASIScustom-classes.ent;

<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Names the module that holds the standard

class definitions for the Journal Archiving
and Interchange DTD Suite.                 -->

%default-classes.ent;

<!– DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE –> <!– Set up the Parameter Entities and element

class definitions that will be used to
over-ride some element mixes in this DTD.
(Defined in %archive-OASIScustom-modules.ent;)   -->

%archivecustom-mixes.ent;

<!– DEFAULT MIX CUSTOMIZATIONS MODULE –> <!– Names the module that holds the standard

mix definitions for the Journal Archiving
and Interchange DTD Suite.                 -->

%default-mixes.ent;

<!– DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS

MODULE                                     -->

<!– Names the module that holds the over-rides

of content models, attribute lists, elements
lists to be used in content models, and
attribute values. These are DTD-specific.
(Defined in %archive-OASIScustom-modules.ent;)   -->

%archivecustom-models.ent;

<!– ============================================================= –> <!– COMMON (SHARED) ELEMENTS MODULE INVOKED –> <!– ============================================================= –>

<!– COMMON (SHARED) DECLARATIONS –> <!– Declarations for elements, attributes,

entities, and Notations that are shared by
more than one class module. Note: Must be 
called before any of the class modules.    -->

%common.ent;

<!– ============================================================= –> <!– JOURNAL ARTICLE CLASS ELEMENTS (alpha) –> <!– ============================================================= –>

<!– ARTICLE METADATA ELEMENTS –> %articlemeta.ent;

<!– BACK MATTER ELEMENTS –> %backmatter.ent;

<!– DISPLAY (GRAPHICAL) ELEMENTS –> %display.ent;

<!– FORMATTING ELEMENT CLASSES –> <!– Elements that change rendition/display. –> %format.ent;

<!– JOURNAL METADATA ELEMENTS –> %journalmeta.ent;

<!– LINK CLASS ELEMENTS –> %link.ent;

<!– LIST CLASS ELEMENTS –> %list.ent;

<!– MATH ELEMENTS –> %math.ent;

<!– NLM CITATION ELEMENT –> %nlmcitation.ent;

<!– PARAGRAPH-LEVEL ELEMENTS –> %para.ent;

<!– PHRASE-LEVEL ELEMENTS –> %phrase.ent;

<!– BIBLIOGRAPHIC REFERENCE (CITATION)

CLASS ELEMENTS                             -->

%references.ent;

<!– SECTION ELEMENTS –> %section.ent;

<!– ============================================================= –> <!– THE REST OF THE EXTERNAL MODULES INVOKED –> <!– ============================================================= –>

<!– MATHML SETUP MODULE –> <!– Invoke the MathML modules –> %mathmlsetup.ent;

<!– XHTML TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values

and then invoke XHTML (HTML 4.0) table 
module

%XHTMLtablesetup.ent;

-->

<!– OASIS TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values

and then invoke XHTML (HTML 4.0) table 
module                                     -->

%oasis-tablesetup.ent;

<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Standard XML special character entities

used in this DTD                           -->

%xmlspecchars.ent;

<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Custom special character entities created

specifically for use in this DTD Suite     -->

%chars.ent;

<!– NOTATION DECLARATIONS MODULE –> %notat.ent;

<!– ============================================================= –> <!– PARAMETER ENTITIES FOR ATTRIBUTE LISTS –> <!– ============================================================= –>

<!– DTD VERSION –> <!– What version of this DTD was used to make

the document instance under consideration.
Note that this is a fixed value that should
change every time the DTD changes versions or
revisions.                                 -->

<!ENTITY % dtd-version

"dtd-version        
            CDATA                         #IMPLIED "  >

<!– ARTICLE ATTRIBUTES –> <!– Attributes for the top-level element

<article>                                  -->

<!ENTITY % article-atts

"article-type   
            CDATA                              #IMPLIED
 %dtd-version;                              
 xml:lang   NMTOKEN                            'EN'     
 %XLINK.xmlns.attrib;
 %MATHML.xmlns.attrib;
 %Schema.xmlns.attrib;"                                  >

<!– SUB-ARTICLE ATTRIBUTES –> <!– Attributes for the <sub-article> element –> <!ENTITY % sub-article-atts

"article-type   
            CDATA                              #IMPLIED
 id         ID                                 #IMPLIED  
 xml:lang   NMTOKEN                            'EN'"     >

<!– RESPONSE ATTRIBUTES –> <!– Attributes for the <response> element –> <!ENTITY % response-atts

"response-type   
            CDATA                              #IMPLIED
 id         ID                                 #IMPLIED  
 xml:lang   NMTOKEN                            'EN'"     >

<!– ============================================================= –> <!– JOURNAL ARTICLE ELEMENTS –> <!– ============================================================= –>

<!– ARTICLE MODEL (LIMITED) –> <!– Article-like model used for, for example,

a short sub-article such as a news brief that
is contained in side a journal article.
Only the metadata (<front> for full metadata
or <front-stub> for article metadata, 
inheriting the rest from the parent article)
is required, although typical short articles
also have a body and may have references or
other back matter.          
The <floats-wrap> container element is just 
a wrapper to hold the floating objects
that occur anywhere in the article. Some 
publishers like to collect all the floating 
objects (figures, tables, text boxes, 
graphics, etc.) together at the end rather  
than interspersing them throughout the parts
of the article where they are referenced.  -->

<!ENTITY % article-short-model

"((front | front-stub), body?, back?,
  floats-wrap?)"                             >

<!– ARTICLE MODEL WITH SUBARTICLE OR RESPONSE –> <!– Typical journal article model, which may

contain extended components, such as
sub-articles or responses, but which usually
contains neither.  
The <floats-wrap> container element is just 
a wrapper to hold the floating objects
that occur anywhere in the article. Some 
publishers like to collect all the floating 
objects (figures, tables, text boxes, 
graphics, etc.) together at the end rather  
than interspersing them throughout the parts
of the article where they are referenced.  -->

<!ENTITY % article-full-model

"(front, body?, back?, floats-wrap?,
  (sub-article* | response*) )"              >

<!– ARTICLE –> <!– The complete content of a journal article.

An article is potentially divided into 
four (more typically three) parts: 1) the
Front Matter (article metadata or header),
the body of the article (main content), any
ancillary information such as a glossary or
appendix, and (the least common) a
response, that is a commentary on the
article itself.                            -->

<!ELEMENT article %article-full-model; > <!– article-type

           What kind of article is this?  
           Note: When the article is a commentary on 
           another article, for example a correction or
           addendum, this attribute is metadata for the 
           commentary itself, it does NOT define the 
           kind of article that is being corrected or
           amended.
             This is an optional CDATA attribute, but
           an article type should be identified if
           possible. Potential values include:
             abstract   The article itself is an 
                        abstract (of a paper or
                        presentation), usually that 
                        has been presented or published 
                        separately.
             addendum   A published item that adds
                        additional information or
                        clarification to another item
                        Similar value "correction"
                        corrects an error in previously
                        published material
             announcement
                        Material announced in the 
                        publication (may or may not be
                        directly related to the pub)
             article-commentary
                        An item whose subject or focus
                        is another article or articles; 
                        this article comments on the 
                        other article(s) (For example,
                        for a controversial article, the
                        editors of the publication 
                        might invite an author of the
                        opposing opinion to comment on
                        the first article, and publish
                        the two together.)
             book-review
                        Review or analysis of one or more
                        printed or online books (Note
                        that product reviews are a
                        separate type.)
             books-received
                        Notification of items such as
                        books that have been received
                        by the publication for review
                        or other consideration
             brief-report
                        A short and/or rapid announcement 
                        of research results
             calendar   A list of events
             case-report
                        Case study, case report, or other
                        description of a case
             collection This value should only be used
                        to describe articles whose
                        intellectual content appears
                        primarily in the <sub-article>
                        or <response> elements.
             correction A modification, or
                        correction of previously
                        published material (sometimes
                        called "errata") Similar value
                        "addendum" merely adds to 
                        previously published material
             dissertation
                        Thesis or dissertation written
                        as part of the completion of
                        a degree of study
             discussion Invited discussion related to a 
                        specific article or issue
             editorial  Opinion piece, policy statement,
                        or general commentary, typically
                        written by staff of the
                        publication. Note: similar value
                        "article-commentary" is reserved 
                        for a commentary on a specific
                        article or articles.
             in-brief   Summary of items in the current 
                        issue
             introduction
                        An introduction to the
                        publication, a series of articles
                        within the publication, etc.,
                        typically for a special section
                        or issue
             letter     Letter to the publication,
                        typically commenting upon a
                        published item
             meeting-report
                         Report of a conference, 
                         symposium, or meeting
             news        News item
             obituary    Announcement of a death or
                         appreciation of a colleague
                         who has recently died
             oration     Reprint of a speech or oral 
                         presentation
             other       Not any of the article types
                         explicitly named in this list
             partial-retraction  
                         Partial retraction of 
                         previously published material
             product-review
                         Description, analysis, or review
                         of a product or service, for
                         example a software package (note
                         that book review is a separate
                         type)
             rapid-communication
                         Fast-breaking research update
                         or other news item
             reply       Reply to a letter or commentary,
                         typically by the original
                         author commenting upon the
                         comments
             reprint     Reprint of a previously
                         published article
             research-article
                         Research article
             retraction  Retraction of previously
                         published material
             review-article
                         Review or state-of-the-art
                         summary article    
             translation Translation of an article
                         originally produced in a
                         different language
dtd-version 
           Which version of the DTD does this article
           use? The value is a #FIXED attribute, so
           the entire attribute definition is defined
           in a Parameter Entity, so the next version
           of the DTD can use a different #FIXED value.
xml:lang   The language in which the value of the
           element is expressed.  Recommended best 
           practice is to use values as defined in
           RFC 1766, typically 2-letter language
           codes such as "FR" (French), "EN" (English),
           and "DE" (German).  These values are NOT
           case sensitive, so "EN" = "en". The values
           may include hyphenated differentiations such 
           as "EN-AU" (Australian English) and "EN-US"
           (United States English).
           Processing and Conversion Note: All other
           xml:lang attributes within the article
           inherit the value set on <article> unless
           explicitly set themselves with their own
           "xml:lang" attribute.                      
xmlns      Set up the pseudo-attributes for the
           namespaces for any namespaces used in this
           DTD.  XLink and MathML are set up in the
           MathML modules. These xmlns are called
           here because certain older tools will not
           work properly with namespaces unless they
           are declared on the top level element.
           The PEs are defined in the MathML modules. -->

<!ATTLIST article

%article-atts;                                          >

<!– ============================================================= –> <!– FRONT MATTER ELEMENTS –> <!– ============================================================= –>

<!– FRONT MATTER MODEL –> <!– Model for the <front> matter (the header

metadata) of a journal article)            -->

<!ENTITY % front-model “(journal-meta?, article-meta,

(%list.class; | %front-back.class;)* )"    >

<!– FRONT MATTER –> <!– The metadata concerning an article, such as

the name and issue of the journal in which it
appears and the name and author(s) of the 
article.
In some journal DTDs this is called the
header information, and it includes metadata
concerning the journal <journal-meta> and 
metadata concerning the issue of the journal 
and the individual article <article-meta>. -->

<!ELEMENT front %front-model; >

<!– ============================================================= –> <!– BODY ELEMENTS –> <!– ============================================================= –>

<!– BODY MODEL –> <!– Content model for the Body (main textual

content) of a journal article.             -->

<!ENTITY % body-model “((%para-level;)*, (%sec-level;)*,

sig-block?)"                               >

<!– BODY OF THE ARTICLE –> <!– The main textual portion of the article that

conveys the content.                       -->

<!ELEMENT body %body-model; >

<!– ============================================================= –> <!– BACK MATTER ELEMENTS –> <!– ============================================================= –>

<!– BACK MATTER MODEL –> <!– Content model for the Back Matter (ancillary

material such as appendices) of a journal
article.                                   -->

<!ENTITY % back-model “(title*, (%doc-back-matter-mix;)* )” >

<!– BACK MATTER –> <!– Ancillary or supporting material not included

as part of the main textual content of a 
journal article, for example appendices and
acknowledgments.                           -->

<!ELEMENT back %back-model; >

<!– ============================================================= –> <!– SUBARTICLE –> <!– ============================================================= –>

<!– SUBARTICLE MODEL –> <!– Content model for the <sub-article> element

-->

<!ENTITY % sub-article-model

"( (front | front-stub), body?, back?,
   floats-wrap?, (sub-article* | response*) )"
                                             >

<!– SUBARTICLE –> <!– An article that is completely contained

inside another article. Both the article and
the subarticle have their own metadata. The
article has at very least journal and issue
information and start and end pages; it may
have a title, author, or other metadata.
The subarticle has its own, independent 
metadata, such as authors, that it 
may not share with the article that
encloses it.                                  
Conversion Note: "Superarticles" that contain
other articles rarely contain much content of
their own, perhaps just a title and 
introductory paragraph.                   
Authoring Note: This construction is NOT to 
be used for an article and its response, or
for a series of responses, even if the
original article to which the responses are
replying is elsewhere.                     -->

<!ELEMENT sub-article %sub-article-model; > <!– article-type

           What kind of article is this?  
           Note: When the article is a commentary on 
           another article, for example a correction or
           addendum, this attribute is metadata for the 
           commentary itself, it does NOT define the 
           kind of article that is being corrected or
           amended.
           Authoring Note: All articles
           should have types assigned if possible.
             abstract   The article itself is an 
                        abstract (of a paper or
                        presentation), usually that 
                        has been presented or published 
                        separately.
             addendum   A published item that adds
                        additional information or
                        clarification to another item
                        Similar value "correction"
                        corrects an error in previously
                        published material
             announcement
                        Material announced in the 
                        publication (may or may not be
                        directly related to the pub)
             article-commentary
                        An item whose subject or focus
                        is another article or articles; 
                        this article comments on the 
                        other article(s) (For example,
                        for a controversial article, the
                        editors of the publication 
                        might invite an author of the
                        opposing opinion to comment on
                        the first article, and publish
                        the two together.)
             book-review
                        Review or analysis of one or more
                        printed or online books (Note
                        that product reviews are a
                        separate type.)
             books-received
                        Notification of items such as
                        books that have been received
                        by the publication for review
                        or other consideration
             brief-report
                        A short and/or rapid announcement 
                        of research results
             calendar   A list of events
             case-report
                        Case study, case report, or other
                        description of a case
             collection This value should only be used
                        to describe articles whose
                        intellectual content appears
                        primarily in the <sub-article>
             correction A modification, or
                        correction of previously
                        published material (sometimes
                        called "errata") Similar value
                        "addendum" merely adds to 
                        previously published material
             discussion Invited discussion related to a 
                        specific article or issue
             dissertation
                        Thesis or dissertation written
                        as part of the completion of
                        a degree of study
             editorial  Opinion piece, policy statement,
                        or general commentary, typically
                        written by staff of the
                        publication. Note: similar value
                        "article-commentary" is reserved 
                        for a commentary on a specific
                        article or articles.
             in-brief   Summary of items in the current 
                        issue
             introduction
                        An introduction to the
                        publication, a series of articles
                        within the publication, etc.,
                        typically for a special section
                        or issue
             letter     Letter to the publication,
                        typically commenting upon a
                        published item
             meeting-report
                         Report of a conference, 
                         symposium, or meeting
             news        News item
             obituary    Announcement of a death or
                         appreciation of a colleague
                         who has recently died
             oration     Reprint of a speech or oral 
                         presentation
             other       Not any of the article types
                         explicitly named in this list
             partial-retraction  
                         Partial retraction of 
                         previously published material
             product-review
                         Description, analysis, or review
                         of a product or service, for
                         example a software package (note
                         that book review is a separate
                         type)
             rapid-communication
                         Fast-breaking research update
                         or other news item
             reply       Reply to a letter or commentary,
                         typically by the original
                         author commenting upon the
                         comments
             reprint     Reprint of a previously
                         published article
             research-article
                         Research article
             retraction  Retraction of previously
                         published material
             review-article
                         Review or state-of-the-art
                         summary article   
             translation Translation of an article
                         originally produced in a
                         different language
id         Unique identifier so the element may be
           referenced  
xml:lang   The language in which the value of the
           element is expressed.  Recommended best 
           practice is to use values as defined in
           RFC 1766, typically 2-letter language
           codes such as "FR" (French), "EN" (English),
           and "DE" (German).  These values are NOT
           case sensitive, so "EN" = "en". The values
           may include hyphenated differentiations such 
           as "EN-AU" (Australian English) and "EN-US"
           (United States English).
           Processing and Conversion Note: All other
           xml:lang attributes within the article
           inherit the value set on <article> unless
           explicitly set themselves with their own
           "xml:lang" attribute.                      -->

<!ATTLIST sub-article

%sub-article-atts;                                      >

<!– FRONT MODEL STUB –> <!– Content model for the <front-stub> element,

a reduced metadata set for use in 
sub-articles and responses, which will 
inherit metadata not defined in the stub
from the enclosing article                 -->

<!ENTITY % front-stub-model

"(article-id*, title-group?, 
 (contrib-group | aff | %x.class;)*, 
 author-notes?, 
 ( (fpage, lpage?, page-range?) | 
    elocation-id)?, 
 history?, permissions?, abstract*)"         >

<!– STUB FRONT METADATA –> <!– A reduced metadata set for use in

sub-articles and responses, which will 
inherit metadata not defined in the stub
from the enclosing article                 -->

<!ELEMENT front-stub %front-stub-model; >

<!– ============================================================= –> <!– RESPONSE ELEMENTS –> <!– ============================================================= –>

<!– RESPONSE –> <!– Reply, response, or commentary concerning the

journal article. In the typical case, the
response is included in the same XML package 
as the original article, and thus attached 
at the end of the article proper.
Authoring Note: Frequently a reply or
response is an article in its own right, not
included as part of the original article.
Such an article could use the 
<related-article> element in the article 
metadata to record the metadata for the 
original article.     
Conversion Note: This construction can also
be used for the pathological case, rarely
seen, in which several responses to an 
article are lumped together into a single
container which is not the original article,
merely a collection of responses. In one
example we examined, the first two responses
were to an original article which was else-
where and the third response was a response
to the first two responses.                -->

<!ELEMENT response %article-short-model; > <!– response-type

           What kind of response is this?
           Note: This does NOT define the kind of
           article on which the response is commenting,
           it is metadata for the response itself.
           Suggested values include: 
            addendum    Adds additional information or 
                        clarification to the parent 
                        article
            discussion  Discussion related to a specific
                        issue described in the parent
                        article
            reply       Reply to the parent article.
                        This is the most commonly used
                        value.
           Authoring Note: This attribute was added to 
           describe cases in which a series of articles
           is chained together: typically as an 
           introduction to the article, an article, then
           several responses to the article.      
id         Unique identifier so the element may be
           referenced  
xml:lang   The language in which the value of the
           element is expressed.  Recommended best 
           practice is to use values as defined in
           RFC 1766, typically 2-letter language
           codes such as "FR" (French), "EN" (English),
           and "DE" (German).  These values are NOT
           case sensitive, so "EN" = "en". The values
           may include hyphenated differentiations such 
           as "EN-AU" (Australian English) and "EN-US"
           (United States English).
           Processing and Conversion Note: All other
           xml:lang attributes within the article
           inherit the value set on <article> unless
           explicitly set themselves with their own
           "xml:lang" attribute.                      -->

<!ATTLIST response

%response-atts;                                         >

<!– ================== End Journal Archiving and Interchange DTD –>