<!– ============================================================= –> <!– MODULE: Journal Article Module of Modules –> <!– VERSION: NISO 0.4 –> <!– DATE: January 2011 –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Module of Modules v0.4 20110131//EN”

Delivered as file "JATS-modules0.ent"                         -->

<!– ============================================================= –>

<!– ============================================================= –> <!– SYSTEM: Archiving and Interchange DTD Suite –> <!– –> <!– PURPOSE: For naming all the external modules (except –> <!– this module itself and the customization modules) –> <!– that are part of the Archiving and Interchange DTD–> <!– Suite modular DTD library. A specific DTD will –> <!– select from these modules by referencing the –> <!– external Parameter Entities defined below that –> <!– name the modules of the suite. To include a set –> <!– of elements (such as all the lists or the MathML –> <!– elements), reference the external Parameter Entity–> <!– of the module that contains these declarations, –> <!– then modify the classes or content models to use –> <!– the new elements. –> <!– –> <!– CONTAINS: 1) Entity declarations and public names for all –> <!– the external modules. Note: The modules –> <!– are NOT referenced (called/invoked) in this –> <!– module, they are merely defined. The DTD or –> <!– a setup module (such as for the XHTML tables) –> <!– will invoke the external parameter entity to –> <!– call the module. –> <!– –> <!– CREATED FOR: –> <!– Digital archives and publishers who wish to –> <!– create a custom XML DTD for original markup of –> <!– journal literature, books, and related material, –> <!– or for archiving and transferring such material –> <!– between archives. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the Archiving and –> <!– Interchange DTD Suite and intend to stay –> <!– compatible with the suite, then please include –> <!– the following statement as a comment in all of –> <!– your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the NISO Z39.96 Journal Article Tag Suite –> <!– (JATS).” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the NISO Z39.96 Journal Article Tag –> <!– Suite.” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– December 2002 –> <!– –> <!– CREATED BY: Jeff Beck (NCBI) –> <!– Deborah Lapeyre (Mulberry Technologies, Inc.) –> <!– Bruce Rosenblum (Inera Inc.) –> <!– B. Tommie Usdin (Mulberry Technologies, Inc.) –> <!– –> <!– NLM thanks the Harvard University Libraries, both –> <!– for proposing that a draft archiving NLM DTD for –> <!– life sciences journals be extended to accommodate –> <!– journals in all disciplines and for sponsoring –> <!– Bruce Rosenblum's collaboration with other DTD –> <!– authors in completing NLM Version 1.0. The –> <!– Andrew W. Mellon Foundation provided support for –> <!– these important contributions. –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– the DTD suite should be sent in email to: –> <!– jats@ncbi.nlm.nih.gov –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– DTD VERSION/CHANGE HISTORY –> <!– ============================================================= –> <!–

Version Reason/Occasion (who) vx.x (yyyy-mm-dd)

   =============================================================
   Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
   This Tag Set is in the process of becoming a NISO standard.
   The version numbers are starting over from 0.4", as a Trial
   Use Draft, to be made into "Version 1.0" when the Tag Suite 
   becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
   been changed to NISO "Version 0.4". No model, attribute, or
   parameter entity changes were made as part of this renaming.
   Details on NISO Tial Use Draft Version 0.4 are available at
         http://jats.nlm.nih.gov/JATS-0.4.
3. Updated the public identifier to "v0.4 20110131//EN", 
   modified the formal public identifier to include "JATS (Z39.96)",
   and the filename as delivered to include "JATS" and the
   new version number "0".
   =============================================================
   Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
   Version 3.1 is fully compatible with Version 3.0.
   Details on version 3.1 are available at
         http://jats.nlm.nih.gov/3.1.
2. Updated public identifier to "v3.1 20100830//EN"
   =============================================================
   Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
   Version 3.0 is the first non-backward-compatible release.
   In addition to the usual incremental changes, some
   elements and attributes have been renamed and/or remodeled
   to better meet user needs and to increase tag set consistency.
   All module change histories are available through the Tag Suite
   web site at http://dtd.nlm.nih.gov.
   Details on version 3.0 are available at
         http://jats.nlm.nih.gov/3.0.
1. Updated public identifier to "v3.0 20080202//EN"              -->

<!– ============================================================= –> <!– DEFAULT CLASSES AND MIXES –> <!– ============================================================= –>

<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Set up the Parameter Entities and element

class definitions that will be used to
establish the content models for the
Archiving and Interchange DTD.             -->

<!ENTITY % default-classes.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Default Element Classes Module v0.4 20110131//EN” “JATS-default-classes0.ent” >

<!– DEFAULT ELEMENT MIXES MODULE –> <!– Set up the Parameter Entities and element

mix definitions that will be used in
content models for the Archiving and
Interchange DTD.                           -->

<!ENTITY % default-mixes.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Default Element Mixes Module v0.4 20110131//EN” “JATS-default-mixes0.ent” >

<!– ============================================================= –> <!– COMMON ELEMENTS SHARED BY MANY MODULES –> <!– ============================================================= –>

<!– COMMON (SHARED) ELEMENT DECLARATIONS –> <!ENTITY % common.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Common (Shared) Elements Module v0.4 20110131//EN” “JATS-common0.ent” >

<!– ============================================================= –> <!– CLASS MODULES (ALPHABETICAL ORDER) –> <!– ============================================================= –>

<!– ARTICLE METADATA ELEMENTS –> <!ENTITY % articlemeta.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Journal Article Metadata Elements v0.4 20110131//EN” “JATS-articlemeta0.ent” >

<!– BACK MATTER ELEMENTS –> <!ENTITY % backmatter.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Back Matter Elements v0.4 20110131//EN” “JATS-backmatter0.ent” >

<!– DISPLAY (GRAPHICAL) ELEMENTS INVOCATION –> <!ENTITY % display.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Display Class Elements v0.4 20110131//EN” “JATS-display0.ent” >

<!– FORMATTING ELEMENTS –> <!– Elements that change rendition/display. This

module includes the Appearance Class, the
Break Class, and the Emphasis Class        -->

<!ENTITY % format.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Formatting Element Classes v0.4 20110131//EN” “JATS-format0.ent” >

<!– FUNDING ELEMENTS –> <!– Elements that model open access, grant,

sponsorship, or other funding information,
for example the grant number (<award-id>)
and the <principal-investigator>           -->

<!ENTITY % funding.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Funding Elements v0.4 20110131//EN” “JATS-funding0.ent” >

<!– JOURNAL METADATA ELEMENTS –> <!ENTITY % journalmeta.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Journal Metadata Elements v0.4 20110131//EN” “JATS-journalmeta0.ent” >

<!– LINK ELEMENTS –> <!ENTITY % link.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Link Class Elements v0.4 20110131//EN” “JATS-link0.ent” >

<!– LIST ELEMENTS –> <!ENTITY % list.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite List Class Elements v0.4 20110131//EN” “JATS-list0.ent” >

<!– MATH ELEMENTS –> <!ENTITY % math.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Math Class Elements v0.4 20110131//EN” “JATS-math0.ent” >

<!– PARAGRAPH-LEVEL ELEMENTS –> <!ENTITY % para.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Paragraph-Like Elements v0.4 20110131//EN” “JATS-para0.ent” >

<!– PHRASE-LEVEL CONTENT ELEMENTS –> <!ENTITY % phrase.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Subject Phrase Class Elements v0.4 20110131//EN” “JATS-phrase0.ent” >

<!– BIBLIOGRAPHY REFERENCES (CITATION) ELEMENTS–> <!ENTITY % references.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Bibliographic Reference (Citation) Class Elements v0.4 20110131//EN” “JATS-references0.ent” >

<!– RELATED OBJECT ELEMENT –> <!– Defines the <related-object> element to

describe a related object such as a
related book or a dataset.                 -->

<!ENTITY % related-object.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Related Object Element v0.4 20110131//EN” “JATS-related-object0.ent” >

<!– SECTION ELEMENTS –> <!ENTITY % section.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Section Class Elements v0.4 20110131//EN” “JATS-section0.ent” >

<!– ============================================================= –> <!– TABLES: XHTML TABLE MODULES –> <!– ============================================================= –>

<!– XHTML TABLE SETUP MODULE –> <!– Set all Parameter Entities needed by the

HTML 4.0 (XHTML) table model, and then
call the module containing that model.
Authoring Note: If wanted, this module
will be invoked in the DTD module          -->

<!ENTITY % XHTMLtablesetup.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite XHTML Table Setup Module v0.4 20110131//EN” “JATS-XHTMLtablesetup0.ent” >

<!– XHTML TABLE MODEL –> <!– The public XML version of the XHTML 1.1

table model. This module is invoked in the
 module %XHTMLtablesetup3.ent;             -->

<!ENTITY % xhtml-table-1.mod

PUBLIC

“-//W3C//ELEMENTS XHTML Tables 1.0//EN” “xhtml-table-1.mod” >

<!– XHTML TABLE INLINE STYLE MODULE –> <!– The public XML version of the XHTML 1.1

inline style module for use in XHTML tables.
This module is invoked in the
 module %XHTMLtablesetup3.ent;             -->

<!ENTITY % xhtml-inlstyle-1.mod

PUBLIC

“-//W3C//ENTITIES XHTML Inline Style 1.0//EN” “xhtml-inlstyle-1.mod” >

<!– ============================================================= –> <!– TABLES: OASIS EXCHANGE TABLE MODULES –> <!– ============================================================= –>

<!– OASIS XML TABLE SETUP MODULE –> <!– Set all Parameter Entities needed by the

OASIS (CALS) Table Exchange table model, and
then call the module containing that model.
Authoring Note: If wanted, this module
will be invoked in the DTD module          -->

<!ENTITY % oasis-tablesetup.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite OASIS XML Table Setup Module v0.4 20110131//EN” “JATS-oasis-tablesetup0.ent” >

<!– OASIS XML TABLE MODEL –> <!– The OASIS (CALS) Table Exchange table model

This module is invoked in
%OASIStablesetup3.ent;                     -->

<!ENTITY % oasis-exchange.ent

PUBLIC

“-//OASIS//DTD XML Exchange Table Model 19990315//EN” “oasis-exchange.ent” >

<!– ============================================================= –> <!– SPECIAL CHARACTER MODULES –> <!– ============================================================= –>

<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Declares any standard XML special character

entities used in this DTD                  -->

<!ENTITY % xmlspecchars.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite XML Special Characters Module v0.4 20110131//EN” “JATS-xmlspecchars0.ent” >

<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Declares any custom special character

entities created for this Suite            -->

<!ENTITY % chars.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Custom Special Characters Module v0.4 20110131//EN” “JATS-chars0.ent” >

<!– ============================================================= –> <!– MATH: MATHML MODULES –> <!– ============================================================= –>

<!– MATHML SETUP MODULE –> <!– Called from the DTD to include the MathML

elements in the tag set.                   -->

<!ENTITY % mathmlsetup.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite MathML Setup Module v0.4 20110131//EN” “JATS-mathmlsetup0.ent” >

<!– MATHML 2.0 QUALIFIED NAMES –> <!ENTITY % mathml-qname.mod

PUBLIC

“-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN” “mathml2-qname-1.mod” >

<!– MATHML 2.0 DTD –> <!ENTITY % mathml.dtd PUBLIC “-//W3C//DTD MathML 2.0//EN” “mathml2.dtd” >

<!– MATHML 2.0 EXTRA ENTITIES –> <!ENTITY % ent-mmlextra

PUBLIC

“-//W3C//ENTITIES Extra for MathML 2.0//EN” “mathml/mmlextra.ent” >

<!– MATHML 2.0 ALIASES –> <!ENTITY % ent-mmlalias

PUBLIC

“-//W3C//ENTITIES Aliases for MathML 2.0//EN” “mathml/mmlalias.ent” >

<!– ============================================================= –> <!– NOTATIONS MODULE –> <!– ============================================================= –>

<!– NOTATION DECLARATIONS MODULE –> <!– Container module for the Notation Declarations

to be used with this DTD suite.  Placed in
their own module for easy expansion or
replacement.                               -->

<!ENTITY % notat.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Notation Declarations v0.4 20110131//EN” “JATS-notat0.ent” >

<!– =================== End Journal Article Module of Modules === –>