<!– ============================================================= –> <!– MODULE: Journal Article Module of Modules –> <!– VERSION: 3.0.1 –> <!– DATE: Apr 2009 –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//Atypon//DTD Atypon Systems Archival NLM DTD Module of Modules v3.0.1 20100714//EN”

Delivered as file "modules3.ent"                              -->

<!– ============================================================= –>

<!– ============================================================= –> <!– SYSTEM: Archiving and Interchange DTD Suite –> <!– –> <!– PURPOSE: For naming all the external modules (except –> <!– this module itself and the customization modules) –> <!– that are part of the Archiving and Interchange DTD–> <!– Suite modular DTD library. A specific DTD will –> <!– select from these modules by referencing the –> <!– external Parameter Entities defined below that –> <!– name the modules of the suite. To include a set –> <!– of elements (such as all the lists or the MathML –> <!– elements), reference the external Parameter Entity–> <!– of the module that contains these declarations, –> <!– then modify the classes or content models to use –> <!– the new elements. –> <!– –> <!– CONTAINS: 1) Entity declarations and public names for all –> <!– the external modules. Note: The modules –> <!– are NOT referenced (called/invoked) in this –> <!– module, they are merely defined. The DTD or –> <!– a setup module (such as for the XHTML tables) –> <!– will invoke the external parameter entity to –> <!– call the module. –> <!– –> <!– CREATED FOR: –> <!– Digital archives and publishers who wish to –> <!– create a custom XML DTD for original markup of –> <!– journal literature, books, and related material, –> <!– or for archiving and transferring such material –> <!– between archives. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the Archiving and –> <!– Interchange DTD Suite and intend to stay –> <!– compatible with the suite, then please include –> <!– the following statement as a comment in all of –> <!– your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the Archiving and Interchange DTD Suite.” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the Archiving and Interchange DTD –> <!– Suite.” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– December 2002 –> <!– –> <!– CREATED BY: Jeff Beck (NCBI) –> <!– Deborah Lapeyre (Mulberry Technologies, Inc.) –> <!– Bruce Rosenblum (Inera Inc.) –> <!– –> <!– NLM thanks the Harvard University Libraries, both –> <!– for proposing that a draft archiving NLM DTD for –> <!– life sciences journals be extended to accommodate –> <!– journals in all disciplines and for sponsoring –> <!– Bruce Rosenblum's collaboration with other DTD –> <!– authors in completing Version 1.0. The Andrew W. –> <!– Mellon Foundation provided support for these –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– the DTD suite should be sent in email to: –> <!– archive-dtd@ncbi.nlm.nih.gov –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– DTD VERSION/CHANGE HISTORY –> <!– ============================================================= –> <!–

=============================================================

Version Reason/Occasion (who) vx.x (yyyy-mm-dd)

   =============================================================
   Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
   Version 3.0 is the first non-backward-compatible release.
   In addition to the usual incremental changes, some
   elements and attributes have been renamed and/or remodeled
   to better meet user needs and to increase tag set consistency.
   All module change histories are available through the Tag Suite 
   web site at http://dtd.nlm.nih.gov. 
   Details on version 3.0 are available at 
         http://dtd.nlm.nih.gov/3.0.
1. Updated public identifier to "v3.0 20080202//EN"              -->

<!– ============================================================= –> <!– DEFAULT CLASSES AND MIXES –> <!– ============================================================= –>

<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Set up the Parameter Entities and element

class definitions that will be used to
establish the content models for the 
Archiving and Interchange DTD.             -->

<!ENTITY % default-classes.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Default Element Classes Module v3.0.1 20100714//EN” “default-classes3.ent” >

<!– DEFAULT ELEMENT MIXES MODULE –> <!– Set up the Parameter Entities and element

mix definitions that will be used in
content models for the Archiving and 
Interchange DTD.                           -->

<!ENTITY % default-mixes.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Default Element Mixes Module v3.0.1 20100714//EN” “default-mixes3.ent” >

<!– ============================================================= –> <!– COMMON ELEMENTS SHARED BY MANY MODULES –> <!– ============================================================= –>

<!– COMMON (SHARED) ELEMENT DECLARATIONS –> <!ENTITY % common.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Common (Shared) Elements Module v3.0.1 20100714//EN” “common3.ent” >

<!– ============================================================= –> <!– CLASS MODULES (ALPHABETICAL ORDER) –> <!– ============================================================= –>

<!– ARTICLE METADATA ELEMENTS –> <!ENTITY % articlemeta.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Journal Article Metadata Elements v3.0.1 20100714//EN” “articlemeta3.ent” >

<!– BACK MATTER ELEMENTS –> <!ENTITY % backmatter.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Back Matter Elements v3.0.1 20100714//EN” “backmatter3.ent” >

<!– DISPLAY (GRAPHICAL) ELEMENTS INVOCATION –> <!ENTITY % display.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Display Class Elements v3.0.1 20100714//EN” “display3.ent” >

<!– FORMATTING ELEMENTS –> <!– Elements that change rendition/display. This

module includes the Appearance Class, the
Break Class, and the Emphasis Class        -->

<!ENTITY % format.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Formatting Element Classes v3.0.1 20100714//EN” “format3.ent” >

<!– FUNDING ELEMENTS –> <!– Elements that model open access, grant,

sponsorship, or other funding information,
for example the grant number (<award-id>)
and the <principal-investigator>           -->

<!ENTITY % funding.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Funding Elements v3.0.1 20100714//EN” “funding3.ent” >

<!– JOURNAL METADATA ELEMENTS –> <!ENTITY % journalmeta.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Journal Metadata Elements v3.0.1 20100714//EN” “journalmeta3.ent” >

<!– LINK ELEMENTS –> <!ENTITY % link.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Link Class Elements v3.0.1 20100714//EN” “link3.ent” >

<!– LIST ELEMENTS –> <!ENTITY % list.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD List Class Elements v3.0.1 20100714//EN” “list3.ent” >

<!– MATH ELEMENTS –> <!ENTITY % math.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Math Class Elements v3.0.1 20100714//EN” “math3.ent” >

<!– PARAGRAPH-LEVEL ELEMENTS –> <!ENTITY % para.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Paragraph-Like Elements v3.0.1 20100714//EN” “para3.ent” >

<!– PHRASE-LEVEL CONTENT ELEMENTS –> <!ENTITY % phrase.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Subject Phrase Class Elements v3.0.1 20100714//EN” “phrase3.ent” >

<!– BIBLIOGRAPHY REFERENCES (CITATION) ELEMENTS–> <!ENTITY % references.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Bibliographic Reference (Citation) Class Elements v3.0.1 20100714//EN” “references3.ent” >

<!– RELATED OBJECT ELEMENT –> <!– Defines the <related-object> element to

describe a related object such as a
related book or a dataset.                 -->

<!ENTITY % related-object.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Related Object Element v3.0.1 20100714//EN” “related-object3.ent” >

<!– SECTION ELEMENTS –> <!ENTITY % section.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD Section Class Elements v3.0.1 20100714//EN” “section3.ent” >

<!– ============================================================= –> <!– TABLES: XHTML TABLE MODULES –> <!– ============================================================= –>

<!– XHTML TABLE SETUP MODULE –> <!– Set all Parameter Entities needed by the

HTML 4.0 (XHTML) table model, and then
call the module containing that model.                           
Authoring Note: If wanted, this module
will be invoked in the DTD module          -->

<!ENTITY % XHTMLtablesetup.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD XHTML Table Setup Module v3.0.1 20100714//EN” “XHTMLtablesetup3.ent” >

<!– XHTML TABLE MODEL –> <!– The public XML version of the XHTML 1.1

table model. This module is invoked in the
 module %XHTMLtablesetup3.ent;             -->

<!ENTITY % xhtml-table-1.mod

PUBLIC

“-//W3C//ELEMENTS XHTML Tables 1.0//EN” “xhtml-table-1.mod” >

<!– XHTML TABLE INLINE STYLE MODULE –> <!– The public XML version of the XHTML 1.1

inline style module for use in XHTML tables.
This module is invoked in the
 module %XHTMLtablesetup3.ent;             -->

<!ENTITY % xhtml-inlstyle-1.mod

PUBLIC

“-//W3C//ENTITIES XHTML Inline Style 1.0//EN” “xhtml-inlstyle-1.mod” >

<!– ============================================================= –> <!– TABLES: OASIS EXCHANGE TABLE MODULES –> <!– ============================================================= –>

<!– OASIS XML TABLE SETUP MODULE –> <!– Set all Parameter Entities needed by the

OASIS (CALS) Table Exchange table model, and 
then call the module containing that model.                           
Authoring Note: If wanted, this module
will be invoked in the DTD module          -->

<!ENTITY % oasis-tablesetup.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD OASIS XML Table Setup Module v1.2 20090430//EN” “oasis-tablesetup3.ent” >

<!– OASIS XML TABLE MODEL –> <!– The OASIS (CALS) Table Exchange table model

This module is invoked in 
%OASIStablesetup3.ent;                     -->

<!ENTITY % oasis-exchange.ent

PUBLIC

“-//OASIS//DTD XML Exchange Table Model 19990315//EN” “oasis-exchange.ent” >

<!– ============================================================= –> <!– SPECIAL CHARACTER MODULES –> <!– ============================================================= –>

<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Declares any standard XML special character

entities used in this DTD                  -->

<!ENTITY % xmlspecchars.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD XML Special Characters Module v3.0.1 20100714//EN” “xmlspecchars3.ent” >

<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Declares any custom special character

entities created for this Suite            -->

<!ENTITY % chars.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Custom Special Characters Module v3.0.1 20100714//EN” “chars3.ent” >

<!– ============================================================= –> <!– MATH: MATHML MODULES –> <!– ============================================================= –>

<!– MATHML SETUP MODULE –> <!– Called from the DTD to include the MathML

elements in the tag set.                   -->

<!ENTITY % mathmlsetup.ent

PUBLIC

“-//Atypon//DTD Atypon Systems Archival NLM DTD MathML Setup Module v3.0.1 20100714//EN” “mathmlsetup3.ent” >

<!– MATHML 2.0 QUALIFIED NAMES –> <!ENTITY % mathml-qname.mod

PUBLIC

“-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN” “mathml2-qname-1.mod” >

<!– MATHML 2.0 DTD –> <!ENTITY % mathml.dtd PUBLIC “-//W3C//DTD MathML 2.0//EN” “mathml2.dtd” >

<!– MATHML 2.0 EXTRA ENTITIES –> <!ENTITY % ent-mmlextra

PUBLIC

“-//W3C//ENTITIES Extra for MathML 2.0//EN” “mathml/mmlextra.ent” >

<!– MATHML 2.0 ALIASES –> <!ENTITY % ent-mmlalias

PUBLIC

“-//W3C//ENTITIES Aliases for MathML 2.0//EN” “mathml/mmlalias.ent” >

<!– ============================================================= –> <!– NOTATIONS MODULE –> <!– ============================================================= –>

<!– NOTATION DECLARATIONS MODULE –> <!– Container module for the Notation Declarations

to be used with this DTD suite.  Placed in
their own module for easy expansion or
replacement.                               -->

<!ENTITY % notat.ent PUBLIC “-//Atypon//DTD Atypon Systems Archival NLM DTD Notation Declarations v3.0.1 20100714//EN” “notat3.ent” >

<!– =================== End Journal Article Module of Modules === –>