module Rbfam

Constants

VERSION

Public Class Methods

db() click to toggle source 
# File lib/rbfam.rb, line 17
def self.db
  DbConfig.instance
end

Public Instance Methods

_id() click to toggle source 
# File lib/rbfam/rna.rb, line 44
def _id
  description.gsub(/\W+/, "_")
end
description() click to toggle source 
# File lib/rbfam/rna.rb, line 40
def description
  "%s/%s-%s" % [accession, from, to]
end
gapped_sequence() click to toggle source 
# File lib/rbfam/rna.rb, line 36
def gapped_sequence
 as_bioseq(read_attribute(:gapped_sequence))
end

Private Instance Methods

as_bioseq(string) click to toggle source 
# File lib/rbfam/rna.rb, line 50
def as_bioseq(string)
  Bio::Sequence::NA.new(string)
end