Mock Version: 2.12 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-seqtrimnext.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1629953819.572005/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '4fe578044ac44ffabfeb538c2344edf4', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1629953819.572005/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-seqtrimnext.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1629849600 Wrote: /builddir/build/SRPMS/rubygem-seqtrimnext-2.0.68-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-seqtrimnext.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1629953819.572005/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8b848af5e8b04f5398421fcbf790d491', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1629953819.572005/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.jxm2ki2n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-seqtrimnext.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1629849600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Wuedzu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqtrimnext-2.0.68 + /usr/bin/gem unpack /builddir/build/SOURCES/seqtrimnext-2.0.68.gem Unpacked gem: '/builddir/build/BUILD/seqtrimnext-2.0.68' + /usr/bin/gem spec /builddir/build/SOURCES/seqtrimnext-2.0.68.gem --ruby + STATUS=0 + '[' 0 -ne 0 ']' + cd seqtrimnext-2.0.68 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.1UJfdo + umask 022 + cd /builddir/build/BUILD + cd seqtrimnext-2.0.68 + gem build ../seqtrimnext-2.0.68.gemspec WARNING: bin/resume_execution_times.rb is not executable WARNING: bin/resume_stn_contaminants.rb is not executable WARNING: no homepage specified WARNING: open-ended dependency on narray (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on gnuplot (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on term-ansicolor (>= 1.0.5) is not recommended if term-ansicolor is semantically versioned, use: add_runtime_dependency 'term-ansicolor', '~> 1.0', '>= 1.0.5' WARNING: open-ended dependency on xml-simple (>= 1.0.12) is not recommended if xml-simple is semantically versioned, use: add_runtime_dependency 'xml-simple', '~> 1.0', '>= 1.0.12' WARNING: open-ended dependency on scbi_blast (>= 0.0.34) is not recommended if scbi_blast is semantically versioned, use: add_runtime_dependency 'scbi_blast', '~> 0.0', '>= 0.0.34' WARNING: open-ended dependency on scbi_mapreduce (>= 0.0.38) is not recommended if scbi_mapreduce is semantically versioned, use: add_runtime_dependency 'scbi_mapreduce', '~> 0.0', '>= 0.0.38' WARNING: open-ended dependency on scbi_fasta (>= 0.1.7) is not recommended if scbi_fasta is semantically versioned, use: add_runtime_dependency 'scbi_fasta', '~> 0.1', '>= 0.1.7' WARNING: open-ended dependency on scbi_fastq (>= 0.0.18) is not recommended if scbi_fastq is semantically versioned, use: add_runtime_dependency 'scbi_fastq', '~> 0.0', '>= 0.0.18' WARNING: open-ended dependency on scbi_plot (>= 0.0.6) is not recommended if scbi_plot is semantically versioned, use: add_runtime_dependency 'scbi_plot', '~> 0.0', '>= 0.0.6' WARNING: open-ended dependency on scbi_math (>= 0.0.1) is not recommended if scbi_math is semantically versioned, use: add_runtime_dependency 'scbi_math', '~> 0.0', '>= 0.0.1' WARNING: open-ended dependency on scbi_headers (>= 0.0.2) is not recommended if scbi_headers is semantically versioned, use: add_runtime_dependency 'scbi_headers', '~> 0.0', '>= 0.0.2' WARNING: See https://guides.rubygems.org/specification-reference/ for help Successfully built RubyGem Name: seqtrimnext Version: 2.0.68 File: seqtrimnext-2.0.68.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc seqtrimnext-2.0.68.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/seqtrimnext-2.0.68 Bin dir: /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin Gem home: /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems Plugins dir: /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/plugins /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/.gitignore /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/Gemfile /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/LICENSE.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/README.md /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/Rakefile /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/create_graphs.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs_from_fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs_from_fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/fasta2fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/fastq2fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/filter_database.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/gen_qual.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/get_seq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/group_by_range.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/join_big_illumina_paired.sh /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/join_ilumina_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_amplicons.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_json_results.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_params.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_clusters.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_execution_times.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_rejected.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_stn_contaminants.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_stn_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/reverse_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/seqtrimnext /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_ilumina_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_ab_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_ab_far_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_ab_left_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_empty_insert.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_ignore_repeated.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_indetermination.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_induced_low_complexity.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_insert.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_is_contaminated.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_key.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_left_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_left_primer.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_linker.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_low_complexity.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_low_high_size.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_low_quality.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_mid.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_middle_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_multiple_linker.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_paired_reads.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_poly_a.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_poly_t.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_rem_adit_artifacts.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_right_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_right_primer.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_sanger_left_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_sanger_right_adapter.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_short_insert.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_trim.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_unexpected_poly_t.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_unexpected_vector.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_user_contaminant.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/action_vectors.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/actions/seqtrim_action.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/action_manager.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/em_classes/seqtrim_work_manager.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/em_classes/seqtrim_worker.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/extract_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/gnu_plot_graph.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/graph_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/install_database.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/install_requirements.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/list_db.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/make_blast_db.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/one_blast.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/params.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/piro.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/plugin_manager.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/scan_for_restr_site.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/scbi_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/seqtrim.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/sequence.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/sequence_group.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/classes/sequence_with_action.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/.DS_Store /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_ab_adapters.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_adapters.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_amplicons.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_contaminants.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_extract_inserts.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_find_poly_at.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_ignore_repeated.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_indeterminations.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_key.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_linker.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_low_complexity.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_low_high_size.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_low_quality.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_mids.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_sanger_adapters.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_short_insert.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_size_trim.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_user_contaminants.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins/plugin_vectors.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins_old/.DS_Store /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins_old/plugin_adapters_old.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins_old/plugin_low_quality_old.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/plugins_old/plugin_rem_adit_artifacts.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/amplicons.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/genomics_454.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/genomics_454_with_paired.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/genomics_short_reads.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/genomics_short_reads_2.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/only_quality.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/sanger.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/transcriptomics_454.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/transcriptomics_454_plants.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/templates/transcriptomics_short_reads.txt /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/extract_samples.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/fasta2xml.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/global_match.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/hash_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/json_utils.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/load_fasta_names_in_hash.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/load_qual_in_hash.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/recover_mid.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/string_utils.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/version.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68/seqtrimnext.gemspec /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/create_graphs.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/extract_seqs.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/extract_seqs_from_fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/extract_seqs_from_fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/fasta2fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/fastq2fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/filter_database.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/gen_qual.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/get_seq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/group_by_range.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/join_big_illumina_paired.sh /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/join_ilumina_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/parse_amplicons.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/parse_json_results.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/parse_params.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/resume_clusters.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/resume_execution_times.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/resume_rejected.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/resume_stn_contaminants.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/resume_stn_stats.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/reverse_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/seqtrimnext /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/split_fasta.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/split_fastq.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/split_ilumina_paired.rb /builddir/build/BUILD/seqtrimnext-2.0.68/usr/bin/split_paired.rb Successfully installed seqtrimnext-2.0.68 Parsing documentation for seqtrimnext-2.0.68 Parsing sources... 1% [ 1/98] lib/seqtrimnext.rb 2% [ 2/98] lib/seqtrimnext/actions/action_ab_adapter.rb 3% [ 3/98] lib/seqtrimnext/actions/action_ab_far_adapter.rb 4% [ 4/98] lib/seqtrimnext/actions/action_ab_left_adapter.rb 5% [ 5/98] lib/seqtrimnext/actions/action_empty_insert.rb 6% [ 6/98] lib/seqtrimnext/actions/action_ignore_repeated.rb 7% [ 7/98] lib/seqtrimnext/actions/action_indetermination.rb 8% [ 8/98] lib/seqtrimnext/actions/action_induced_low_complexity.rb 9% [ 9/98] lib/seqtrimnext/actions/action_insert.rb 10% [10/98] lib/seqtrimnext/actions/action_is_contaminated.rb 11% [11/98] lib/seqtrimnext/actions/action_key.rb 12% [12/98] lib/seqtrimnext/actions/action_left_adapter.rb 13% [13/98] lib/seqtrimnext/actions/action_left_primer.rb 14% [14/98] lib/seqtrimnext/actions/action_linker.rb 15% [15/98] lib/seqtrimnext/actions/action_low_complexity.rb 16% [16/98] lib/seqtrimnext/actions/action_low_high_size.rb 17% [17/98] lib/seqtrimnext/actions/action_low_quality.rb 18% [18/98] lib/seqtrimnext/actions/action_mid.rb 19% [19/98] lib/seqtrimnext/actions/action_middle_adapter.rb 20% [20/98] lib/seqtrimnext/actions/action_multiple_linker.rb 21% [21/98] lib/seqtrimnext/actions/action_paired_reads.rb 22% [22/98] lib/seqtrimnext/actions/action_poly_a.rb 23% [23/98] lib/seqtrimnext/actions/action_poly_t.rb 24% [24/98] lib/seqtrimnext/actions/action_rem_adit_artifacts.rb 25% [25/98] lib/seqtrimnext/actions/action_right_adapter.rb 26% [26/98] lib/seqtrimnext/actions/action_right_primer.rb 27% [27/98] lib/seqtrimnext/actions/action_sanger_left_adapter.rb 28% [28/98] lib/seqtrimnext/actions/action_sanger_right_adapter.rb 29% [29/98] lib/seqtrimnext/actions/action_short_insert.rb 30% [30/98] lib/seqtrimnext/actions/action_trim.rb 31% [31/98] lib/seqtrimnext/actions/action_unexpected_poly_t.rb 32% 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lib/seqtrimnext/templates/only_quality.txt 86% [85/98] lib/seqtrimnext/templates/sanger.txt 87% [86/98] lib/seqtrimnext/templates/transcriptomics_454.txt 88% [87/98] lib/seqtrimnext/templates/transcriptomics_454_plants.txt 89% [88/98] lib/seqtrimnext/templates/transcriptomics_short_reads.txt 90% [89/98] lib/seqtrimnext/utils/extract_samples.rb 91% [90/98] lib/seqtrimnext/utils/fasta2xml.rb 92% [91/98] lib/seqtrimnext/utils/global_match.rb 93% [92/98] lib/seqtrimnext/utils/hash_stats.rb 94% [93/98] lib/seqtrimnext/utils/json_utils.rb 95% [94/98] lib/seqtrimnext/utils/load_fasta_names_in_hash.rb 96% [95/98] lib/seqtrimnext/utils/load_qual_in_hash.rb 97% [96/98] lib/seqtrimnext/utils/recover_mid.rb 98% [97/98] lib/seqtrimnext/utils/string_utils.rb 100% [98/98] lib/seqtrimnext/version.rb Installing ri documentation for seqtrimnext-2.0.68 Installing darkfish documentation for seqtrimnext-2.0.68 Done installing documentation for seqtrimnext after 1 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RHFMzV + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 + cd seqtrimnext-2.0.68 + mkdir -p /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64/usr/share/gems/ + mkdir -p /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64/usr/bin + cp -a ./usr/bin/create_graphs.rb ./usr/bin/extract_seqs.rb ./usr/bin/extract_seqs_from_fasta.rb ./usr/bin/extract_seqs_from_fastq.rb ./usr/bin/fasta2fastq.rb ./usr/bin/fastq2fasta.rb ./usr/bin/filter_database.rb ./usr/bin/gen_qual.rb ./usr/bin/get_seq.rb ./usr/bin/group_by_range.rb ./usr/bin/join_big_illumina_paired.sh ./usr/bin/join_ilumina_paired.rb ./usr/bin/parse_amplicons.rb ./usr/bin/parse_json_results.rb ./usr/bin/parse_params.rb ./usr/bin/resume_clusters.rb ./usr/bin/resume_execution_times.rb ./usr/bin/resume_rejected.rb ./usr/bin/resume_stn_contaminants.rb ./usr/bin/resume_stn_stats.rb ./usr/bin/reverse_paired.rb ./usr/bin/seqtrimnext ./usr/bin/split_fasta.rb ./usr/bin/split_fastq.rb ./usr/bin/split_ilumina_paired.rb ./usr/bin/split_paired.rb /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64/usr/bin/ + find /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64/usr/share/gems/gems/seqtrimnext-2.0.68/bin -type f + xargs chmod a+x + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.0.68-1.fc36 --unique-debug-suffix -2.0.68-1.fc36.x86_64 --unique-debug-src-base rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seqtrimnext-2.0.68 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/json_utils.rb is executable but has no shebang, removing executable bit mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/lib/seqtrimnext/utils/fasta2xml.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_paired.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_ilumina_paired.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/split_fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/seqtrimnext from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/reverse_paired.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_stn_stats.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_stn_contaminants.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_rejected.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_execution_times.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/resume_clusters.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_params.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_json_results.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/parse_amplicons.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/join_ilumina_paired.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/join_big_illumina_paired.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/group_by_range.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/get_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/gen_qual.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/filter_database.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/fastq2fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/fasta2fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs_from_fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs_from_fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/extract_seqs.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/seqtrimnext-2.0.68/bin/create_graphs.rb from /usr/bin/env ruby to #!/usr/bin/ruby + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yIfkxl + umask 022 + cd /builddir/build/BUILD + cd seqtrimnext-2.0.68 + pushd ./usr/share/gems/gems/seqtrimnext-2.0.68 ~/build/BUILD/seqtrimnext-2.0.68/usr/share/gems/gems/seqtrimnext-2.0.68 ~/build/BUILD/seqtrimnext-2.0.68 + popd ~/build/BUILD/seqtrimnext-2.0.68 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rubygem-seqtrimnext-2.0.68-1.fc36.noarch Provides: rubygem(seqtrimnext) = 2.0.68 rubygem-seqtrimnext = 2.0.68-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/ruby ruby(rubygems) rubygem(gnuplot) rubygem(narray) rubygem(scbi_blast) >= 0.0.34 rubygem(scbi_fasta) >= 0.1.7 rubygem(scbi_fastq) >= 0.0.18 rubygem(scbi_headers) >= 0.0.2 rubygem(scbi_mapreduce) >= 0.0.38 rubygem(scbi_math) >= 0.0.1 rubygem(scbi_plot) >= 0.0.6 rubygem(term-ansicolor) >= 1.0.5 rubygem(xml-simple) >= 1.0.12 Processing files: rubygem-seqtrimnext-doc-2.0.68-1.fc36.noarch Provides: rubygem-seqtrimnext-doc = 2.0.68-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 Wrote: /builddir/build/RPMS/rubygem-seqtrimnext-2.0.68-1.fc36.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-seqtrimnext-doc-2.0.68-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4ePaUu + umask 022 + cd /builddir/build/BUILD + cd seqtrimnext-2.0.68 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-seqtrimnext-2.0.68-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0