class ActionMid

Author: Almudena Bocinos Rioboo

Defines the main methods that are necessary to execute Plugin1

Inherit: Plugin

Public Class Methods

new(start_pos,end_pos) click to toggle source
Calls superclass method SeqtrimAction::new
# File lib/seqtrimnext/actions/action_mid.rb, line 12
def initialize(start_pos,end_pos)
  super(start_pos,end_pos)    
  @cut =true
end

Public Instance Methods

apply_decoration(char) click to toggle source

def apply_to(seq)

  # seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
  $LOG.debug " Applying #{self.class} to seq #{seq.seq_name} . BEGIN: #{@start_pos}   END: #{@end_pos}  " 

end
# File lib/seqtrimnext/actions/action_mid.rb, line 24
def apply_decoration(char)
  return char.yellow.bold
  
end