class ActionShortInsert
Author: Almudena Bocinos Rioboo
Defines the main methods that are necessary to execute ActionShortInserted
Inherit: Plugin
Public Class Methods
new(start_pos,end_pos)
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Calls superclass method
SeqtrimAction::new
# File lib/seqtrimnext/actions/action_short_insert.rb, line 12 def initialize(start_pos,end_pos) super(start_pos,end_pos) # @cut =true @cut = false @informative = true end
Public Instance Methods
apply_decoration(char)
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def apply_to(seq)
# seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos) $LOG.debug " Applying #{self.class}. ------ Error.Sequence is not good ------ . BEGIN: #{@start_pos} END: #{@end_pos} "
end
# File lib/seqtrimnext/actions/action_short_insert.rb, line 27 def apply_decoration(char) return char.on_red end