class ActionAbAdapter

Author: Almudena Bocinos Rioboo

Defines the main methods that are necessary to execute Plugin1

Inherit: Plugin

Public Class Methods

new(start_pos,end_pos) click to toggle source

Calls superclass method SeqtrimAction::new

# File lib/seqtrimnext/actions/action_ab_adapter.rb, line 12
def initialize(start_pos,end_pos)
  super(start_pos,end_pos)    
  @cut =true

end

Public Instance Methods

apply_decoration(char) click to toggle source

def apply_to(seq)

# seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
$LOG.debug " Applying #{self.class} . BEGIN: #{@start_pos}   END: #{@end_pos}  "

end

# File lib/seqtrimnext/actions/action_ab_adapter.rb, line 25
def apply_decoration(char) 
  return char.magenta.underline
  
  #  return char.magenta.negative
end