class Object
Constants
- MAX_DUST_DISTANCE_FROM_POLYT
- MAX_POLY_A_FROM_RIGHT
- MAX_POLY_T_FROM_LEFT
MAX_RUBBISH = 3
- MIN_DUST_SIZE
- MIN_MIDDLE_POLY_A_SIZE
- MIN_MIDDLE_POLY_T_SIZE
- MIN_TN_COUNT
- OUTPUT_PATH
- ROOT_PATH
- STATS_PATH
OUTPUT_PATH
='output_files'
Private Instance Methods
overlap(polys,mi_start,mi_end)
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# File lib/seqtrimnext/plugins/plugin_find_poly_at.rb, line 13 def overlap(polys,mi_start,mi_end) # overlap = polys.find{|e| ( mi_start < e['end'])} overlap = polys.find{|e| ( overlapX?(mi_start,mi_end, e['begin'],e['end']) )} # puts " Overlap #{mi_start} #{mi_end} => #{overlap}" return overlap end