class ActionRemAditArtifacts

Author: Almudena Bocinos Rioboo

Defines the main methods that are necessary to execute PluginActionLowHighSize

Inherit: Plugin

Public Class Methods

new(start_pos,end_pos) click to toggle source
Calls superclass method SeqtrimAction::new
# File lib/seqtrimnext/actions/action_rem_adit_artifacts.rb, line 12
def initialize(start_pos,end_pos)
   super(start_pos,end_pos)    
   @cut =true

 end

Public Instance Methods

apply_decoration(char) click to toggle source

def apply_to(seq)

# seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
$LOG.debug " Applying #{self.class}  to #{seq.seq_name}  " 
#delete sequence if it was created

end

# File lib/seqtrimnext/actions/action_rem_adit_artifacts.rb, line 27
def apply_decoration(char)
  return char.yellow.negative
end