# ====================================== # General parameters to extract Amplicons # ======================================

# Help: <br/>This template is used to remove only bad quality regions<br/>

# Help: <br/>Plugin list and aplication order:<br/>

# Help: <ul> # Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li> # Help: </ul>

plugin_list = PluginLowQuality

# do not remove cloned sequences remove_clonality=false

# remove amplicons containing less or equal number of sequences indicated

generate_initial_stats = false

# Minimum insert size for every trimmed sequence

min_insert_size_trimmed = 30