# Generated from seqtrimnext-2.0.68.gem by gem2rpm -*- rpm-spec -*-
%global gem_name seqtrimnext

Name: rubygem-%{gem_name}
Version: 2.0.68
Release: 1%{?dist}
Summary: Sequences preprocessing and cleaning software
License: MIT
Source0: https://rubygems.org/gems/%{gem_name}-%{version}.gem
BuildRequires: ruby(release)
BuildRequires: rubygems-devel
BuildRequires: ruby
BuildArch: noarch

%description
Seqtrimnext is a plugin based system to preprocess and clean sequences from
multiple NGS sequencing platforms.


%package doc
Summary: Documentation for %{name}
Requires: %{name} = %{version}-%{release}
BuildArch: noarch

%description doc
Documentation for %{name}.

%prep
%setup -q -n %{gem_name}-%{version}

%build
# Create the gem as gem install only works on a gem file
gem build ../%{gem_name}-%{version}.gemspec

# %%gem_install compiles any C extensions and installs the gem into ./%%gem_dir
# by default, so that we can move it into the buildroot in %%install
%gem_install

%install
mkdir -p %{buildroot}%{gem_dir}
cp -a .%{gem_dir}/* \
        %{buildroot}%{gem_dir}/


mkdir -p %{buildroot}%{_bindir}
cp -a .%{_bindir}/* \
        %{buildroot}%{_bindir}/

find %{buildroot}%{gem_instdir}/bin -type f | xargs chmod a+x

%check
pushd .%{gem_instdir}
# Run the test suite.
popd

%files
%dir %{gem_instdir}
%{_bindir}/create_graphs.rb
%{_bindir}/extract_seqs.rb
%{_bindir}/extract_seqs_from_fasta.rb
%{_bindir}/extract_seqs_from_fastq.rb
%{_bindir}/fasta2fastq.rb
%{_bindir}/fastq2fasta.rb
%{_bindir}/filter_database.rb
%{_bindir}/gen_qual.rb
%{_bindir}/get_seq.rb
%{_bindir}/group_by_range.rb
%{_bindir}/join_big_illumina_paired.sh
%{_bindir}/join_ilumina_paired.rb
%{_bindir}/parse_amplicons.rb
%{_bindir}/parse_json_results.rb
%{_bindir}/parse_params.rb
%{_bindir}/resume_clusters.rb
%{_bindir}/resume_execution_times.rb
%{_bindir}/resume_rejected.rb
%{_bindir}/resume_stn_contaminants.rb
%{_bindir}/resume_stn_stats.rb
%{_bindir}/reverse_paired.rb
%{_bindir}/seqtrimnext
%{_bindir}/split_fasta.rb
%{_bindir}/split_fastq.rb
%{_bindir}/split_ilumina_paired.rb
%{_bindir}/split_paired.rb
%exclude %{gem_instdir}/.gitignore
%license %{gem_instdir}/LICENSE.txt
%{gem_instdir}/bin
%{gem_libdir}
%exclude %{gem_cache}
%{gem_spec}

%files doc
%doc %{gem_docdir}
%{gem_instdir}/Gemfile
%doc %{gem_instdir}/README.md
%{gem_instdir}/Rakefile
%{gem_instdir}/seqtrimnext.gemspec

%changelog
* Wed Aug 25 2021 mockbuilder - 2.0.68-1
- Initial package