Table of Contents - bio-assembly-0.1.0 Documentation
Pages
Classes and Modules
- Bio
- Bio::Assembly
- Bio::Assembly::Ace
- Bio::Assembly::Ace::Contig
- Bio::Assembly::Ace::Read
- Bio::Assembly::Ace::Read::BaseSequence
- Bio::Assembly::Caf
- Bio::Assembly::Caf::Contig
- Bio::Assembly::Caf::Read
- Bio::Assembly::Contig
- Bio::Assembly::Maf
- Bio::Assembly::Read
Methods
- ::new — Bio::Assembly::Ace
- ::new — Bio::Assembly::Ace::Read::BaseSequence
- ::new — Bio::Assembly::Caf
- ::new — Bio::Assembly::Contig
- ::new — Bio::Assembly::Maf
- ::new — Bio::Assembly::Read
- ::open — Bio::Assembly
- ::register_parser — Bio::Assembly
- #<=> — Bio::Assembly::Ace::Read::BaseSequence
- #<=> — Bio::Assembly::Read
- #== — Bio::Assembly::Read
- #add_base_sequence — Bio::Assembly::Ace::Read
- #add_read — Bio::Assembly::Contig
- #clear_range_from= — Bio::Assembly::Read
- #clear_range_to= — Bio::Assembly::Read
- #convert_to_contig — Bio::Assembly::Caf
- #convert_to_read — Bio::Assembly::Caf
- #each_contig — Bio::Assembly
- #each_contig — Bio::Assembly::Ace
- #each_contig — Bio::Assembly::Caf
- #each_identifier — Bio::Assembly::Ace
- #each_read — Bio::Assembly::Contig
- #find_read_by_name — Bio::Assembly::Contig
- #find_reads_in_range — Bio::Assembly::Contig
- #from= — Bio::Assembly::Read
- #num_base_segments — Bio::Assembly::Contig
- #num_bases — Bio::Assembly::Contig
- #num_bases — Bio::Assembly::Read
- #num_reads — Bio::Assembly
- #num_reads — Bio::Assembly::Contig
- #parse_af — Bio::Assembly::Ace
- #parse_af — Bio::Assembly::Caf
- #parse_as — Bio::Assembly::Ace
- #parse_blocks — Bio::Assembly::Caf
- #parse_bq — Bio::Assembly::Ace
- #parse_bs — Bio::Assembly::Ace
- #parse_clipping — Bio::Assembly::Caf
- #parse_contig — Bio::Assembly::Ace
- #parse_ct — Bio::Assembly::Ace
- #parse_dna — Bio::Assembly::Caf
- #parse_ds — Bio::Assembly::Ace
- #parse_qa — Bio::Assembly::Ace
- #parse_rd — Bio::Assembly::Ace
- #parse_seq — Bio::Assembly::Caf
- #parse_strand — Bio::Assembly::Caf
- #parse_wa — Bio::Assembly::Ace
- #parse_whole_file — Bio::Assembly
- #seq= — Bio::Assembly::Contig
- #seq= — Bio::Assembly::Read
- #to= — Bio::Assembly::Read
- #to_ace — Bio::Assembly::Ace
- #to_ace — Bio::Assembly::Ace::Contig
- #to_ace — Bio::Assembly::Ace::Read
- #to_ace_af — Bio::Assembly::Ace::Read
- #to_ace_bs — Bio::Assembly::Ace::Read
- #to_ace_rest — Bio::Assembly::Ace::Read