class Object
Public Instance Methods
getTreeObjFromNwkString(nwk_str)
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# File lib/bio/nwk.rb, line 188 def getTreeObjFromNwkString(nwk_str) nwk = Bio::Newick.new(nwk_str) tree = nwk.tree return(tree) end
getTreeObjs(tree_file, num=1000000)
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# File lib/bio/nwk.rb, line 174 def getTreeObjs(tree_file, num=1000000) trees = Array.new treeio = Bio::FlatFile.open(Bio::Newick, tree_file=='-' ? $stdin : tree_file) while newick = treeio.next_entry tree = newick.tree tree.options[:bootstrap_style] = :traditional next if tree.nodes.empty? trees << tree break if trees.size >= num end return(trees) end