Table of Contents - biotcm-0.13.0 Documentation
Classes and Modules
- BioTCM
- BioTCM::Apps
- BioTCM::Apps::GeneDetector
- BioTCM::Apps::PubmedGeneMiner
- BioTCM::Apps::StringProcessor
- BioTCM::Databases
- BioTCM::Databases::Cipher
- BioTCM::Databases::HGNC
- BioTCM::Databases::HGNC::Converter
- BioTCM::Databases::HGNC::Extentions
- BioTCM::Databases::HGNC::Extentions::Array
- BioTCM::Databases::HGNC::Extentions::String
- BioTCM::Databases::HGNC::Parser
- BioTCM::Databases::HGNC::Rescuer
- BioTCM::Databases::KEGG
- BioTCM::Databases::Medline
- BioTCM::Databases::Medline::EUtilities
- BioTCM::Databases::OMIM
- BioTCM::Interfaces
- BioTCM::Interfaces::Interface
- BioTCM::Interfaces::Matlab
- BioTCM::Interfaces::R
- BioTCM::Layer
- BioTCM::Table
- BioTCM::Table::Extensions
- BioTCM::Table::Extensions::String
Methods
- ::as_dictionary — BioTCM::Databases::HGNC
- ::build — BioTCM::Table
- ::detect_genes — BioTCM::Databases::OMIM
- ::ensure — BioTCM::Databases::HGNC
- ::entry_url — BioTCM::Databases::OMIM
- ::extended — BioTCM::Databases::HGNC::Converter
- ::extended — BioTCM::Databases::HGNC::Parser
- ::extended — BioTCM::Databases::HGNC::Rescuer
- ::get — BioTCM::Databases::Cipher
- ::get — BioTCM::Databases::OMIM
- ::get_pathway — BioTCM::Databases::KEGG
- ::get_pathway_list — BioTCM::Databases::KEGG
- ::load — BioTCM::Layer
- ::load — BioTCM::Table
- ::load — BioTCM::Databases::HGNC
- ::load_disease_list — BioTCM::Databases::Cipher
- ::load_gene_list — BioTCM::Databases::Cipher
- ::new — BioTCM::Apps::GeneDetector
- ::new — BioTCM::Apps::PubmedGeneMiner
- ::new — BioTCM::Apps::StringProcessor
- ::new — BioTCM::Databases::Medline
- ::new — BioTCM::Layer
- ::new — BioTCM::Table
- ::valid_pathway_id? — BioTCM::Databases::KEGG
- ::validate_pathway_id — BioTCM::Databases::KEGG
- #& — BioTCM::Databases::Medline
- #ambiguous_symbol — BioTCM::Databases::HGNC::Parser
- #and — BioTCM::Databases::Medline
- #as_medline — BioTCM::Apps::PubmedGeneMiner
- #check — BioTCM::Apps::StringProcessor
- #clone — BioTCM::Table
- #col — BioTCM::Table
- #col_keys — BioTCM::Table
- #col_keys= — BioTCM::Table
- #comments= — BioTCM::Table
- #converter_list — BioTCM::Databases::HGNC::Converter
- #create_direct_converter — BioTCM::Databases::HGNC::Converter
- #create_indirect_converter — BioTCM::Databases::HGNC::Converter
- #curl — BioTCM
- #detect — BioTCM::Apps::GeneDetector
- #download_abstracts — BioTCM::Databases::Medline
- #each_col — BioTCM::Table
- #each_row — BioTCM::Table
- #efetch — BioTCM::Databases::Medline::EUtilities
- #ele — BioTCM::Table
- #esearch — BioTCM::Databases::Medline::EUtilities
- #evaluate_matlab_script — BioTCM::Interfaces::Matlab
- #evaluate_r_script — BioTCM::Interfaces::R
- #extract_by_species — BioTCM::Apps::StringProcessor
- #fetch_pubmed_ids — BioTCM::Databases::Medline
- #find_species_id — BioTCM::Apps::StringProcessor
- #formal_symbol? — BioTCM::Databases::HGNC::Extentions::String
- #formalize_symbol — BioTCM::Databases::HGNC::Extentions::String
- #get_col — BioTCM::Table
- #get_ele — BioTCM::Table
- #get_row — BioTCM::Table
- #inspect — BioTCM::Databases::Medline
- #inspect — BioTCM::Table
- #logger — BioTCM
- #merge — BioTCM::Table
- #meta — BioTCM
- #mine — BioTCM::Apps::PubmedGeneMiner
- #mine_offline — BioTCM::Apps::PubmedGeneMiner
- #mine_online — BioTCM::Apps::PubmedGeneMiner
- #or — BioTCM::Databases::Medline
- #parse — BioTCM::Databases::HGNC::Parser
- #path_to — BioTCM
- #primary_key= — BioTCM::Table
- #render_template — BioTCM::Interfaces::Interface
- #rescue_method — BioTCM::Databases::HGNC::Rescuer
- #rescue_method= — BioTCM::Databases::HGNC::Rescuer
- #rescue_symbol — BioTCM::Databases::HGNC::Rescuer
- #rescue_symbol= — BioTCM::Databases::HGNC::Rescuer
- #rescue_symbol? — BioTCM::Databases::HGNC::Rescuer
- #row — BioTCM::Table
- #row_keys — BioTCM::Table
- #row_keys= — BioTCM::Table
- #run_matlab_script — BioTCM::Interfaces::Matlab
- #run_r_script — BioTCM::Interfaces::R
- #save — BioTCM::Layer
- #save — BioTCM::Table
- #search — BioTCM::Databases::Medline
- #select — BioTCM::Table
- #select_col — BioTCM::Table
- #select_row — BioTCM::Table
- #set_col — BioTCM::Table
- #set_ele — BioTCM::Table
- #set_row — BioTCM::Table
- #stamp — BioTCM
- #to_formal_symbol — BioTCM::Databases::HGNC::Extentions::String
- #to_formal_symbols — BioTCM::Databases::HGNC::Extentions::Array
- #to_s — BioTCM::Databases::Medline
- #to_s — BioTCM::Table
- #to_table — BioTCM::Table::Extensions::String
- #| — BioTCM::Databases::Medline