class CagnutSamtools::Base

Public Instance Methods

do_flag_stat(dirs, order, previous_job_id, input = nil) click to toggle source
# File lib/cagnut_samtools/base.rb, line 18
def do_flag_stat dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutSamtools::DoFlagStat.new(opts).run previous_job_id
end
merge_bam(dirs, order, previous_job_id, input = nil) click to toggle source
# File lib/cagnut_samtools/base.rb, line 8
def merge_bam dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order }
  CagnutSamtools::MergeBam.new(opts).run previous_job_id
end