class CagnutSamtools::Base
Public Instance Methods
do_flag_stat(dirs, order, previous_job_id, input = nil)
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# File lib/cagnut_samtools/base.rb, line 18 def do_flag_stat dirs, order, previous_job_id, input = nil opts = { input: input, dirs: dirs, order: order } CagnutSamtools::DoFlagStat.new(opts).run previous_job_id end
merge_bam(dirs, order, previous_job_id, input = nil)
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# File lib/cagnut_samtools/base.rb, line 8 def merge_bam dirs, order, previous_job_id, input = nil opts = { input: input, dirs: dirs, order: order } CagnutSamtools::MergeBam.new(opts).run previous_job_id end
mg_bam_soft_link(dirs, order, previous_job_id, input = nil)
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# File lib/cagnut_samtools/base.rb, line 13 def mg_bam_soft_link dirs, order, previous_job_id, input = nil opts = { input: input, dirs: dirs, order: order } CagnutSamtools::MgBamSoftLink.new(opts).run previous_job_id end