class CagnutSamtools::Util
Attributes
config[RW]
samtools[RW]
Public Class Methods
new(config=nil)
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# File lib/cagnut_samtools/util.rb, line 5 def initialize config=nil @config = config @samtools = CagnutSamtools::Base.new end
Public Instance Methods
do_flag_stat(dirs, order=1, previous_job_id=nil, filename = nil)
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# File lib/cagnut_samtools/util.rb, line 20 def do_flag_stat dirs, order=1, previous_job_id=nil, filename = nil samtools.do_flag_stat dirs, order, previous_job_id, filename order+1 end
merge_bam(dirs, order=1, previous_job_id=nil, filename = nil)
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# File lib/cagnut_samtools/util.rb, line 10 def merge_bam dirs, order=1, previous_job_id=nil, filename = nil job_name, filename = samtools.merge_bam dirs, order, previous_job_id, filename [job_name, filename, order+1] end
mg_bam_soft_link(dirs, order=1, previous_job_id=nil, filename = nil)
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# File lib/cagnut_samtools/util.rb, line 15 def mg_bam_soft_link dirs, order=1, previous_job_id=nil, filename = nil job_name, filename = samtools.mg_bam_soft_link dirs, order, previous_job_id, filename [job_name, filename, order+1] end