class CagnutSamtools::Util

Attributes

config[RW]
samtools[RW]

Public Class Methods

new(config=nil) click to toggle source
# File lib/cagnut_samtools/util.rb, line 5
def initialize config=nil
  @config = config
  @samtools = CagnutSamtools::Base.new
end

Public Instance Methods

do_flag_stat(dirs, order=1, previous_job_id=nil, filename = nil) click to toggle source
# File lib/cagnut_samtools/util.rb, line 20
def do_flag_stat dirs, order=1, previous_job_id=nil, filename = nil
  samtools.do_flag_stat dirs, order, previous_job_id, filename
  order+1
end
merge_bam(dirs, order=1, previous_job_id=nil, filename = nil) click to toggle source
# File lib/cagnut_samtools/util.rb, line 10
def merge_bam dirs, order=1, previous_job_id=nil, filename = nil
  job_name, filename = samtools.merge_bam dirs, order, previous_job_id, filename
  [job_name, filename, order+1]
end