class ExeCppLogReader
Public Class Methods
new(batch_folderpath,sample_index,analyte_name,chromatogram_type, *params)
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Calls superclass method
CommandLine_Exe::new
# File lib/exe_cpplogreader.rb, line 6 def initialize(batch_folderpath,sample_index,analyte_name,chromatogram_type, *params) @batch_folderpath = batch_folderpath @sample_index = sample_index @analyte_name = analyte_name @chromatogram_type = case chromatogram_type.downcase when 'quantifier','a','quant' 'Quant' when 'qualifier','q','qual' 'Qual' when 'internal standard', 'internalstandard','is' 'IS' else chromatogram_type end super('CppLogReader.py',*params) end
Public Instance Methods
run()
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Calls superclass method
CommandLine_Exe#run
# File lib/exe_cpplogreader.rb, line 28 def run retcode,rundetails = super(cmd) if retcode rundetails[:stdout] = JSON.parse(rundetails[:stdout]) else errmsg = "#(rundetails[:cmd]} - #{rundetails[:stdout]}" puts errmsg $log_detercomp.error errmsg end return retcode,rundetails end
Private Instance Methods
cmd()
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# File lib/exe_cpplogreader.rb, line 44 def cmd "#{@exe_path} -b #{@batch_folderpath} -s #{@sample_index} -a #{@analyte_name} -c #{@chromatogram_type}" end
log_decisions_to_array(property_description, hashDif)
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# File lib/exe_cpplogreader.rb, line 48 def log_decisions_to_array(property_description, hashDif) arr = Array.new begin arr << property_description if property_description == 'peak_picked' arr << 0 arr << 0 arr << 0 arr << hashDif arr << '' else arr << (hashDif[:percent_diff]) arr << (hashDif[:baseline_rounded] || hashDif[:baseline]) #.to_s arr << (hashDif[:undertest_rounded] || hashDif[:undertest]) #.to_s if hashDif[:scale].nil? arr << '' else arr << "#{hashDif[:scale]} (#{hashDif[:min]}-#{hashDif[:max]})" end if hashDif[:calculation].nil? arr << '' else arr << hashDif[:calculation] end end rescue Exception => e $log_detercomp.err "error creating html table for #{property_description}" end return arr end