<?xml version=“1.0” encoding=“UTF-8”?><Sequence xmlns=“hl7.org/fhir”>

<id value="fda-vcfeval-comparison"/>
<text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: fda-vcfeval-comparison</p><p><b>coordinateSystem</b>: 1</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000001.11 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code &#39;NC_000001.11&#39; = &#39;NC_000001.11)</span></td><td>1</td><td>10453</td><td>101770080</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>13116</td><td>13117</td><td>T</td><td>G</td></tr></table><blockquote><p><b>quality</b></p><p><b>type</b>: indel</p><p><b>standardSequence</b>: file-BkZxBZ00bpJVk2q6x43b1YBx <span>(Details : {https://precision.fda.gov/files/ code &#39;file-BkZxBZ00bpJVk2q6x43b1YBx&#39; = &#39;file-BkZxBZ00bpJVk2q6x43b1YBx)</span></p><p><b>start</b>: 10453</p><p><b>end</b>: 101770080</p><p><b>method</b>: Vcfeval + Hap.py Comparison <span>(Details : {https://precision.fda.gov/apps/ code &#39;app-BxfGF8j02pBZzZxbzZxP725P&#39; = &#39;app-BxfGF8j02pBZzZxbzZxP725P)</span></p><p><b>truthTP</b>: 7749</p><p><b>truthFN</b>: 2554</p><p><b>queryFP</b>: 10670</p><p><b>gtFP</b>: 2186</p><p><b>precision</b>: 0.428005</p><p><b>recall</b>: 0.752111</p></blockquote><blockquote><p><b>quality</b></p><p><b>type</b>: snp</p><p><b>standardSequence</b>: file-BkZxBZ00bpJVk2q6x43b1YBx <span>(Details : {https://precision.fda.gov/files/ code &#39;file-BkZxBZ00bpJVk2q6x43b1YBx&#39; = &#39;file-BkZxBZ00bpJVk2q6x43b1YBx)</span></p><p><b>start</b>: 10453</p><p><b>end</b>: 101770080</p><p><b>method</b>: Vcfeval + Hap.py Comparison <span>(Details : {https://precision.fda.gov/apps/ code &#39;app-BxfGF8j02pBZzZxbzZxP725P&#39; = &#39;app-BxfGF8j02pBZzZxbzZxP725P)</span></p><p><b>truthTP</b>: 92106</p><p><b>truthFN</b>: 1247</p><p><b>queryFP</b>: 21744</p><p><b>gtFP</b>: 493</p><p><b>precision</b>: 0.808602</p><p><b>recall</b>: 0.986642</p></blockquote><h3>Repositories</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Url</b></td><td><b>Name</b></td></tr><tr><td>*</td><td>login</td><td><a>https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y</a></td><td>FDA</td></tr></table></div></text><coordinateSystem value="1"/>
<patient>
    <reference value="Patient/example"/>
</patient>
<referenceSeq>
    <referenceSeqId>
      <coding>
        <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>
        <code value="NC_000001.11"/>
      </coding>
    </referenceSeqId>
    <strand value="1"/>
    <windowStart value="10453"/>
    <windowEnd value="101770080"/>
</referenceSeq>
<variant>
    <start value="13116"/>
    <end value="13117"/>
    <observedAllele value="T"/>
    <referenceAllele value="G"/>
</variant>
<quality>
    <type value="indel"/>
    <standardSequence>
        <coding>
            <system value="https://precision.fda.gov/files/"/>
            <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/>
        </coding>
    </standardSequence>
    <start value="10453"/>
    <end value="101770080"/>
    <method>
        <coding>
            <system value="https://precision.fda.gov/apps/"/>
            <code value="app-BxfGF8j02pBZzZxbzZxP725P"/>
        </coding>
        <text value="Vcfeval + Hap.py Comparison"/>
    </method>
    <truthTP value="7749"/>
    <truthFN value="2554"/>
    <queryFP value="10670"/>
    <gtFP value="2186"/>
    <precision value="0.428005"/>
    <recall value="0.752111"/>
</quality>
<quality>
    <type value="snp"/>
    <standardSequence>
        <coding>
            <system value="https://precision.fda.gov/files/"/>
            <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/>
        </coding>
    </standardSequence>
    <start value="10453"/>
    <end value="101770080"/>
    <method>
        <coding>
            <system value="https://precision.fda.gov/apps/"/>
            <code value="app-BxfGF8j02pBZzZxbzZxP725P"/>
        </coding>
        <text value="Vcfeval + Hap.py Comparison"/>
    </method>
    <truthTP value="92106"/>
    <truthFN value="1247"/>
    <queryFP value="21744"/>
    <gtFP value="493"/>
    <precision value="0.808602"/>
    <recall value="0.986642"/>
</quality>
<repository>
    <type value="login"/>
    <url value="https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y"/>
    <name value="FDA"/>
</repository>

</Sequence>