Table of Contents - htslib-0.0.3 Documentation
Classes and Modules
- FFI
- FFI::BitStruct
- FFI::BitStruct::BitFieldsModule
- FFI::Struct
- HTS
- HTS::Bam
- HTS::Bam::Cigar
- HTS::Bam::Flag
- HTS::Bam::Header
- HTS::Bam::Record
- HTS::Error
- HTS::Fai
- HTS::LibHTS
- HTS::LibHTS::BGZF
- HTS::LibHTS::Bam1
- HTS::LibHTS::Bam1Core
- HTS::LibHTS::BamHdr
- HTS::LibHTS::BamPileup1
- HTS::LibHTS::BamPileupCd
- HTS::LibHTS::Bcf1
- HTS::LibHTS::BcfDec
- HTS::LibHTS::BcfFmt
- HTS::LibHTS::BcfHdr
- HTS::LibHTS::BcfHrec
- HTS::LibHTS::BcfIdinfo
- HTS::LibHTS::BcfIdpair
- HTS::LibHTS::BcfInfo
- HTS::LibHTS::BcfVariant
- HTS::LibHTS::Faidx
- HTS::LibHTS::HtsFile
- HTS::LibHTS::HtsFormat
- HTS::LibHTS::HtsIdx
- HTS::LibHTS::HtsItr
- HTS::LibHTS::HtsOpt
- HTS::LibHTS::HtsThreadPool
- HTS::LibHTS::KSeq
- HTS::LibHTS::KString
- HTS::LibHTS::SamFile
- HTS::LibHTS::SamHdr
- HTS::LibHTS::Tbx
- HTS::LibHTS::TbxConf
- HTS::Tbx
- HTS::VCF
- HTS::VCF::Format
- HTS::VCF::Header
- HTS::VCF::Info
- HTS::VCF::Record
Methods
- ::attach_function — HTS::LibHTS
- ::bam_cigar_gen — HTS::LibHTS
- ::bam_cigar_op — HTS::LibHTS
- ::bam_cigar_opchr — HTS::LibHTS
- ::bam_cigar_oplen — HTS::LibHTS
- ::bam_cigar_type — HTS::LibHTS
- ::bam_get_aux — HTS::LibHTS
- ::bam_get_cigar — HTS::LibHTS
- ::bam_get_l_aux — HTS::LibHTS
- ::bam_get_qname — HTS::LibHTS
- ::bam_get_qual — HTS::LibHTS
- ::bam_get_seq — HTS::LibHTS
- ::bam_is_mrev — HTS::LibHTS
- ::bam_is_rev — HTS::LibHTS
- ::bam_seqi — HTS::LibHTS
- ::bcf_hdr_nsamples — HTS::LibHTS
- ::bit_fields — FFI::BitStruct
- ::new — HTS::Bam
- ::new — HTS::Bam::Cigar
- ::new — HTS::Bam::Flag
- ::new — HTS::Bam::Header
- ::new — HTS::Bam::Record
- ::new — HTS::Fai
- ::new — HTS::Tbx
- ::new — HTS::VCF
- ::new — HTS::VCF::Format
- ::new — HTS::VCF::Header
- ::new — HTS::VCF::Info
- ::new — HTS::VCF::Record
- ::open — HTS::Fai
- ::rom_sam_str — HTS::Bam::Record
- ::sam_itr_next — HTS::LibHTS
- ::search_htslib — HTS
- ::struct_layout — FFI::Struct
- ::union_layout — FFI::Struct
- #[] — FFI::BitStruct::BitFieldsModule
- #base_at — HTS::Bam::Record
- #base_qualities — HTS::Bam::Record
- #base_quality_at — HTS::Bam::Record
- #build — HTS::Tbx
- #cget — HTS::Fai
- #chrom — HTS::Bam::Record
- #chrom_length — HTS::Fai
- #chrom_size — HTS::Fai
- #cigar — HTS::Bam::Record
- #close — HTS::Bam
- #close — HTS::Fai
- #delete — HTS::VCF::Format
- #delete — HTS::VCF::Info
- #dup? — HTS::Bam::Flag
- #each — HTS::Bam
- #each — HTS::Bam::Cigar
- #each — HTS::VCF
- #flag — HTS::Bam::Record
- #flag_str — HTS::Bam::Record
- #flush — HTS::Bam
- #formats — HTS::VCF::Record
- #genotypes — HTS::VCF::Format
- #genotypes — HTS::VCF::Record
- #get — HTS::Fai
- #get — HTS::VCF::Format
- #get — HTS::VCF::Info
- #has_flag? — HTS::Bam::Flag
- #has_flag? — HTS::VCF::Info
- #id — HTS::VCF::Record
- #isize — HTS::Bam::Record
- #length — HTS::Fai
- #mapping_quality — HTS::Bam::Record
- #mate_chrom — HTS::Bam::Record
- #mate_pos — HTS::Bam::Record
- #mate_reverse? — HTS::Bam::Flag
- #mate_start — HTS::Bam::Record
- #mate_tid — HTS::Bam::Record
- #mate_unmapped? — HTS::Bam::Flag
- #n_samples — HTS::VCF
- #paired? — HTS::Bam::Flag
- #pos — HTS::VCF::Record
- #proper_pair? — HTS::Bam::Flag
- #qcfail? — HTS::Bam::Flag
- #qlen — HTS::Bam::Record
- #qname — HTS::Bam::Record
- #qual — HTS::VCF::Record
- #query — HTS::Bam
- #read1? — HTS::Bam::Flag
- #read2? — HTS::Bam::Flag
- #ref — HTS::VCF::Record
- #reverse? — HTS::Bam::Flag
- #rlen — HTS::Bam::Record
- #secondary? — HTS::Bam::Flag
- #seq — HTS::VCF
- #seqs — HTS::Bam::Header
- #seqs — HTS::VCF::Header
- #sequence — HTS::Bam::Record
- #sequences — HTS::Tbx
- #set — HTS::VCF::Format
- #set — HTS::VCF::Info
- #size — HTS::Fai
- #start — HTS::Bam::Record
- #start — HTS::VCF::Record
- #stop — HTS::Bam::Record
- #stop — HTS::VCF::Record
- #strand — HTS::Bam::Record
- #supplementary? — HTS::Bam::Flag
- #tags — HTS::Bam::Record
- #text — HTS::Bam::Header
- #text — HTS::VCF::Header
- #tid — HTS::Bam::Record
- #to_s — HTS::Bam::Cigar
- #unmapped? — HTS::Bam::Flag
- #write — HTS::Bam