class ORFnucleotides

Helper class for storing ORF information

Attributes

start[R]
stop[R]

Public Class Methods

new(sequence, start, stop) click to toggle source
Calls superclass method ORFsequence::new
# File lib/bigbio/sequence/predictorf.rb, line 16
def initialize sequence, start, stop
  super(sequence)
  @start = start
  @stop = stop
end

Public Instance Methods

fullseq() click to toggle source
# File lib/bigbio/sequence/predictorf.rb, line 26
def fullseq
  @seq
end
seq() click to toggle source
# File lib/bigbio/sequence/predictorf.rb, line 22
def seq
  @seq[@start..@stop-1]
end
to_s() click to toggle source
# File lib/bigbio/sequence/predictorf.rb, line 30
def to_s
  seq
end