class Bio::Blat::StreamedReport
Public Class Methods
each_best_hit(text = '') { |val| ... }
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# File lib/bio-blat-tools/blat-tools.rb, line 31 def self.each_best_hit(text = '') best_aln = Hash.new self.each_hit(text) do |hit| current_matches = hit.match current_name = hit.query_id current_identity = hit.percent_identity current_score = hit.score best_aln[current_name] = hit if best_aln[current_name] == nil or current_score > best_aln[current_name] .score end best_aln.each_value { |val| yield val } end
each_hit(text = '') { |hit| ... }
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# File lib/bio-blat-tools/blat-tools.rb, line 7 def self.each_hit(text = '') flag = false head = [] text.each_line do |line| if flag then yield Hit.new(line) else if /^\d/ =~ line then # for headerless data flag = true redo end line = line.chomp if /\A\-+\s*\z/ =~ line flag = true else head << line end end end end