Table of Contents - bio-exominer-0.0.3 Documentation
Pages
- LICENSE
-
README
- bio-exominer
- Installation
- Quick start
- Command line interface (CLI)
- Adding NCBI symbols and aliases
- Adding HUGO symbols and aliases
- Making a text file of your document
- Using Exominer to mine a text file for symbols
- Speeding up text search
- Using exominer with a triple-store
- Context
- Vocabularies
- Using exominer with a triple-store
- Mining gene symbols with SPARQL
- Looking for all database information in the triple-store
- Project home page
- TODO
- Cite
- Biogems.info
- Copyright
Classes and Modules
Methods
- ::add — BioExominer::TextParser
- ::each — BioExominer::Symbols
- ::make_identifier — BioExominer::RDF
- ::parse_line — BioExominer::Symbols
- ::rm_punctuation — BioExominer::TextParser
- ::tokenize — BioExominer::TextParser
- ::tokenize_with_context — BioExominer::TextParser
- ::uri — BioExominer::Symbols
- ::valid_token? — BioExominer::TextParser
- ::valid_uri? — BioExominer::RDF