class Bio::GFFbrowser::GFF3ParseFile
Attributes
records[R]
sequences[R]
Public Class Methods
new(fn)
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# File lib/bio/db/gff/gff3parsefile.rb, line 12 def initialize fn @records = [] @sequences = [] fh = File.open(fn) fh.each_line do | line | s = line.strip if s == '##FASTA' break end next if s.length == 0 or s =~ /^#/ @records.push FastLineRecord.new(parse_line_fast(s)) end fasta = Bio::GFF::FastaReader.new(fh) fasta.each do | id, fastarec | @sequences.push FastaRecord.new(id,fastarec) end end