module Bio::GFFbrowser::Helpers::Validate

Public Instance Methods

validate_cdss() click to toggle source
# File lib/bio/db/gff/gffvalidate.rb, line 15
def validate_cdss 
  return if not @options[:validate]
  @cdslist.validate_seqname
  # validate CDS sections do not overlap
  @cdslist.validate_nonoverlapping
  # validate sections share the parent
  @cdslist.validate_shared_parent
  # display unhandled features
end
validate_mrnas() click to toggle source
# File lib/bio/db/gff/gffvalidate.rb, line 8
def validate_mrnas 
  return if not @options[:validate]
  # validate gene/container/component seqname is shared
  @mrnalist.validate_seqname
  @mrnalist.validate_shared_parent
end