module Bio

bio/db/gff/digest/gffparser.rb - Fully digesting parsing logic for GFF3 file

Copyright

Copyright © 2010 Pjotr Prins <pjotr.prins@thebird.nl>

License

The Ruby License

bio/db/gff/gfffasta.rb - Fetch records from a file in FASTA format

Copyright

Copyright © 2010 Pjotr Prins <pjotr.prins@thebird.nl>

License

The Ruby License

This requires a special implementation as it uses an open file and we retain file seek positions.

bio/db/gff/gfffileiterator.rb - Fetch records from a GFF3 file

Copyright

Copyright © 2010 Pjotr Prins <pjotr.prins@thebird.nl>

License

The Ruby License

Record parsing logic for GFF3

Copyright

Copyright © 2011 Pjotr Prins <pjotr.prins@thebird.nl>

License

The Ruby License

bio/db/gff/gffsequence.rb - Assemble mRNA and CDS from GFF

Copyright

Copyright © 2010 Pjotr Prins <pjotr.prins@thebird.nl>

License

The Ruby License

Fetch information from a GFF file