class Bio::LazyBlast::Report::Iteration::Hit
Attributes
accession[R]
definition[R]
hit_id[R]
len[R]
num[R]
Public Class Methods
new(reader)
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# File lib/bio/appl/blast/lazyblastxml.rb, line 106 def initialize(reader) @nodes = Enumerator.new do |yielder| until (reader.name == "Hit" and reader.node_type == LibXML::XML::Reader::TYPE_END_ELEMENT) or !reader.read yielder << reader if reader.node_type == LibXML::XML::Reader::TYPE_ELEMENT end end setup_hit_values end
Public Instance Methods
each() { |hsp| ... }
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# File lib/bio/appl/blast/lazyblastxml.rb, line 133 def each @nodes.each{|node| yield Hsp.new(node) if node.name == "Hsp"} end
Also aliased as: each_hsp
setup_hit_values()
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# File lib/bio/appl/blast/lazyblastxml.rb, line 115 def setup_hit_values @nodes.each do |node| return if node.name == 'Hit_hsps' case node.name when 'Hit_num' @num = node.read_inner_xml.to_i when 'Hit_id' @hit_id = node.read_inner_xml.to_i when 'Hit_def' @definition = node.read_inner_xml when 'Hit_accession' @accession = node.read_inner_xml when 'Hit_len' @len = node.read_inner_xml end end end