class Bio::LazyBlast::Report::Iteration
Attributes
message[R]
num[R]
parameters[R]
query_def[R]
query_id[R]
query_len[R]
Public Class Methods
new(reader)
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# File lib/bio/appl/blast/lazyblastxml.rb, line 70 def initialize(reader) @nodes = Enumerator.new do |yielder| until (reader.name == "Iteration" and reader.node_type == LibXML::XML::Reader::TYPE_END_ELEMENT) or !reader.read yielder << reader if reader.node_type == LibXML::XML::Reader::TYPE_ELEMENT end end setup_iteration_values end
Public Instance Methods
each() { |hit| ... }
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# File lib/bio/appl/blast/lazyblastxml.rb, line 97 def each @nodes.each{|node| yield Hit.new(node) if node.name == "Hit"} end
Also aliased as: each_hit
setup_iteration_values()
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# File lib/bio/appl/blast/lazyblastxml.rb, line 79 def setup_iteration_values @nodes.each do |node| return if node.name == 'Iteration_hits' case node.name when 'Iteration_iter-num' @num = node.read_inner_xml.to_i when 'Iteration_query-ID' @query_id = node.read_inner_xml when 'Iteration_query-def' @query_def = node.read_inner_xml when 'Iteration_query-len' @query_len = node.read_inner_xml.to_i when 'Iteration_message' @message = node.read_inner_xml end end end