Table of Contents - bio-restriction_enzyme-1.0.0 Documentation
Pages
Classes and Modules
- Bio
- Bio::RestrictionEnzyme
- Bio::RestrictionEnzyme::Analysis
- Bio::RestrictionEnzyme::CutSymbol
- Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
- Bio::RestrictionEnzyme::DoubleStranded
- Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
- Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
- Bio::RestrictionEnzyme::DoubleStranded::CutLocationPairInEnzymeNotation
- Bio::RestrictionEnzyme::DoubleStranded::CutLocations
- Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- Bio::RestrictionEnzyme::DoubleStranded::EnzymeAction
- Bio::RestrictionEnzyme::Fragments
- Bio::RestrictionEnzyme::Range
- Bio::RestrictionEnzyme::Range::CutRange
- Bio::RestrictionEnzyme::Range::CutRanges
- Bio::RestrictionEnzyme::Range::HorizontalCutRange
- Bio::RestrictionEnzyme::Range::SequenceRange
- Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
- Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
- Bio::RestrictionEnzyme::Range::VerticalCutRange
- Bio::RestrictionEnzyme::SingleStrand
- Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
- Bio::RestrictionEnzyme::SingleStrandComplement
- Bio::RestrictionEnzyme::StringFormatting
Methods
- ::align — Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
- ::align_with_cuts — Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
- ::cut — Bio::RestrictionEnzyme
- ::cut — Bio::RestrictionEnzyme::Analysis
- ::cut_symbol — Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
- ::cut_symbol= — Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
- ::cut_without_permutations — Bio::RestrictionEnzyme::Analysis
- ::enzyme_name? — Bio::RestrictionEnzyme
- ::escaped_cut_symbol — Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
- ::new — Bio::RestrictionEnzyme
- ::new — Bio::RestrictionEnzyme::DoubleStranded
- ::new — Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
- ::new — Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
- ::new — Bio::RestrictionEnzyme::DoubleStranded::CutLocations
- ::new — Bio::RestrictionEnzyme::Range::HorizontalCutRange
- ::new — Bio::RestrictionEnzyme::Range::SequenceRange
- ::new — Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- ::new — Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
- ::new — Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
- ::new — Bio::RestrictionEnzyme::Range::VerticalCutRange
- ::new — Bio::RestrictionEnzyme::SingleStrand
- ::new — Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
- ::once — Bio::RestrictionEnzyme::SingleStrand
- ::rebase — Bio::RestrictionEnzyme
- ::validate_input — Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
- #add_cut_range — Bio::RestrictionEnzyme::Range::SequenceRange
- #add_cut_ranges — Bio::RestrictionEnzyme::Range::SequenceRange
- #add_cuts_from_cut_ranges — Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- #add_horizontal_cut_range — Bio::RestrictionEnzyme::Range::SequenceRange
- #add_spacing — Bio::RestrictionEnzyme::StringFormatting
- #aligned_strands — Bio::RestrictionEnzyme::DoubleStranded
- #aligned_strands_with_cuts — Bio::RestrictionEnzyme::DoubleStranded
- #blunt? — Bio::RestrictionEnzyme::DoubleStranded
- #clean_all — Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- #complement — Bio::RestrictionEnzyme::Fragments
- #complement — Bio::RestrictionEnzyme::DoubleStranded::CutLocations
- #complement_to_array_index — Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- #create_action_at — Bio::RestrictionEnzyme::DoubleStranded
- #create_bins — Bio::RestrictionEnzyme::Range::SequenceRange
- #create_cut_locations — Bio::RestrictionEnzyme::DoubleStranded
- #create_enzyme_actions — Bio::RestrictionEnzyme::Analysis
- #create_primary_and_complement — Bio::RestrictionEnzyme::DoubleStranded
- #cut — Bio::RestrictionEnzyme::Analysis
- #cut_and_return_by_permutations — Bio::RestrictionEnzyme::Analysis
- #cut_symbol — Bio::RestrictionEnzyme::CutSymbol
- #cut_without_permutations — Bio::RestrictionEnzyme::Analysis
- #escaped_cut_symbol — Bio::RestrictionEnzyme::CutSymbol
- #find_match_locations — Bio::RestrictionEnzyme::Analysis
- #for_display — Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
- #for_display — Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
- #fragments — Bio::RestrictionEnzyme::Range::SequenceRange
- #fragments_for_display — Bio::RestrictionEnzyme::Analysis
- #helper_for_to_array_index — Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- #include? — Bio::RestrictionEnzyme::Range::CutRanges
- #include? — Bio::RestrictionEnzyme::Range::HorizontalCutRange
- #include? — Bio::RestrictionEnzyme::Range::VerticalCutRange
- #init_with_array — Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
- #initialize_with_pattern_and_cut_locations — Bio::RestrictionEnzyme::DoubleStranded
- #initialize_with_pattern_and_cut_symbols — Bio::RestrictionEnzyme::DoubleStranded
- #initialize_with_rebase — Bio::RestrictionEnzyme::DoubleStranded
- #left_padding — Bio::RestrictionEnzyme::StringFormatting
- #max — Bio::RestrictionEnzyme::Range::CutRanges
- #max_vertical — Bio::RestrictionEnzyme::Range::CutRanges
- #min — Bio::RestrictionEnzyme::Range::CutRanges
- #min_vertical — Bio::RestrictionEnzyme::Range::CutRanges
- #orientation — Bio::RestrictionEnzyme::SingleStrand
- #orientation — Bio::RestrictionEnzyme::SingleStrandComplement
- #palindromic? — Bio::RestrictionEnzyme::SingleStrand
- #pattern — Bio::RestrictionEnzyme::SingleStrand
- #permute — Bio::RestrictionEnzyme::Analysis
- #primary — Bio::RestrictionEnzyme::Fragments
- #primary — Bio::RestrictionEnzyme::DoubleStranded::CutLocations
- #primary_to_array_index — Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- #re_cut_symbol — Bio::RestrictionEnzyme::CutSymbol
- #re_cut_symbol_adjacent — Bio::RestrictionEnzyme::CutSymbol
- #remove_incomplete_cuts — Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- #right_padding — Bio::RestrictionEnzyme::StringFormatting
- #set_cut_symbol — Bio::RestrictionEnzyme::CutSymbol
- #setup_new_bin — Bio::RestrictionEnzyme::Range::SequenceRange
- #sticky? — Bio::RestrictionEnzyme::DoubleStranded
- #strands_for_display — Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
- #strip_and_sort — Bio::RestrictionEnzyme::Fragments
- #strip_cuts_and_padding — Bio::RestrictionEnzyme::StringFormatting
- #strip_padding — Bio::RestrictionEnzyme::StringFormatting
- #to_array_index — Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- #to_array_index — Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
- #validate_1 — Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
- #validate_2 — Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
- #validate_2 — Bio::RestrictionEnzyme::DoubleStranded::CutLocationPairInEnzymeNotation
- #validate_args — Bio::RestrictionEnzyme::DoubleStranded::CutLocations
- #validate_args — Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
- #validate_args — Bio::RestrictionEnzyme::SingleStrand
- #validate_cut_locations — Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
- #vertical_min_max_helper — Bio::RestrictionEnzyme::Range::CutRanges
- #with_cut_symbols — Bio::RestrictionEnzyme::SingleStrand
- #with_spaces — Bio::RestrictionEnzyme::SingleStrand