bio-sambamba¶ ↑
Full description goes here
Note: this software is under active development!
Installation¶ ↑
rake build rake install
In order to use the gem, you also need sambamba
tool installed (version >= 0.2.6).
If you use Debian, you can download a package for your architecture from github downloads.
Otherwise, you need to do the following:
-
install DMD compiler
-
install Ragel finite state machine compiler
-
On Mac OS X you can install homebrew package manager, then install dmd and ragel easily with
brew install dmd brew install ragel
-
On Arch Linux you can use pacman to install dmd and ragel
pacman -S dmd libphobos ragel
-
clone sambamba repository and compile the tool
git clone https://github.com/lomereiter/sambamba.git cd sambamba/CLItools/ make
-
place the executable file
build/sambamba
to somewhere in your $PATH, for example:
cp build/sambamba /usr/local/bin
Usage¶ ↑
require 'bio-sambamba'
The API doc is online. For more code examples see the test files in the source tree.
Project home page¶ ↑
Information on the source tree, documentation, examples, issues and how to contribute, see
github.com/lomereiter/bioruby-sambamba
The BioRuby community is on IRC server: irc.freenode.org, channel: bioruby.
Cite¶ ↑
If you use this software, please cite one of
Biogems.info¶ ↑
This Biogem is published at #bio-sambamba
Copyright¶ ↑
Copyright © 2012 Artem Tarasov. See LICENSE.txt for further details.