Table of Contents - bio-table-1.0.0 Documentation
Pages
- LICENSE
-
README
- bio-table
- Installation
- The command line interface (CLI)
- Transforming a table
- Statistics
- Sorting a table
- Combining/merging tables
- Splitting a table
- Diffing and overlapping tables
- Different parsers
- Using STDIN
- Formatted output
- Output table to RDF
- bio-table API (for Ruby programmers)
- Reading, transforming, and writing a table
- Loading a numerical matrix
- Moreā¦
- Troubleshooting
- Project home page
- Cite
- Biogems.info
- Copyright
Classes and Modules
- BioTable
- BioTable::Columns
- BioTable::Count
- BioTable::Count::CountTracker
- BioTable::CsvFormatter
- BioTable::Diff
- BioTable::EvalFormatter
- BioTable::Filter
- BioTable::FormatFactory
- BioTable::Formatter
- BioTable::Indexer
- BioTable::LazyValues
- BioTable::LineParser
- BioTable::Merge
- BioTable::NumericFilter
- BioTable::Overlap
- BioTable::RDF
- BioTable::RDF::Writer
- BioTable::Rewrite
- BioTable::Statistics
- BioTable::Statistics::Accumulate
- BioTable::TabFormatter
- BioTable::Table
- BioTable::TableApply
- BioTable::TableLoader
- BioTable::TableReader
- BioTable::TableRow
- BioTable::TableWriter
- BioTable::TableWriter::EvalWriter
- BioTable::TableWriter::Writer
- BioTable::TextualFilter
- BioTable::Validator
- FastaReader
- FastaRecord
Methods
- ::apply_column_filter — BioTable::Filter
- ::create — BioTable::FormatFactory
- ::create_column_index — BioTable::Filter
- ::create_index — BioTable::Indexer
- ::diff_tables — BioTable::Diff
- ::emit — BioTable::TableLoader
- ::filter_column_index — BioTable::Filter
- ::generic — BioTable::Filter
- ::header — BioTable::RDF
- ::make_identifier — BioTable::RDF
- ::make_key — BioTable::Indexer
- ::merge_tables — BioTable::Merge
- ::namespaces — BioTable::RDF
- ::new — BioTable::Count::CountTracker
- ::new — BioTable::LazyValues
- ::new — BioTable::TextualFilter
- ::new — BioTable::NumericFilter
- ::new — BioTable::EvalFormatter
- ::new — FastaRecord
- ::new — FastaReader
- ::new — BioTable::RDF::Writer
- ::new — BioTable::Statistics::Accumulate
- ::new — BioTable::Table
- ::new — BioTable::TableApply
- ::new — BioTable::TableRow
- ::new — BioTable::TableWriter::Writer
- ::numeric — BioTable::Filter
- ::overlap_tables — BioTable::Overlap
- ::parse — BioTable::LineParser
- ::read_file — BioTable::TableReader
- ::rewrite — BioTable::Rewrite
- ::row — BioTable::RDF
- ::strip_quotes — BioTable::Formatter
- ::to_list — BioTable::Columns
- ::transform_header_ids — BioTable::Formatter
- ::transform_row_ids — BioTable::Formatter
- ::valid_header? — BioTable::Validator
- ::valid_int? — BioTable::Filter
- ::valid_number? — BioTable::Filter
- ::valid_row? — BioTable::Validator
- #[] — BioTable::LazyValues
- #[] — BioTable::Table
- #add — BioTable::Count::CountTracker
- #add — BioTable::Statistics::Accumulate
- #all_fields — BioTable::TableRow
- #all_valid? — BioTable::TableRow
- #append — BioTable::TableRow
- #close — FastaReader
- #column_index — BioTable::TableApply
- #compact — BioTable::LazyValues
- #digest_tag — FastaReader
- #each — BioTable::LazyValues
- #each — FastaReader
- #each — BioTable::Table
- #find_fields — BioTable::Table
- #first — FastaReader
- #get — FastaReader
- #get_by_index — FastaReader
- #get_rec — FastaReader
- #indexed? — FastaReader
- #match_all_fields? — BioTable::TableRow
- #method_missing — BioTable::TextualFilter
- #method_missing — BioTable::NumericFilter
- #numeric — BioTable::NumericFilter
- #parse_each — FastaReader
- #parse_header — BioTable::TableApply
- #parse_row — BioTable::TableApply
- #push — BioTable::Table
- #read_file — BioTable::Table
- #read_lines — BioTable::Table
- #row_by_columns — BioTable::Table
- #row_by_name — BioTable::Table
- #set_name — BioTable::Table
- #size — BioTable::LazyValues
- #size — FastaReader
- #textual — BioTable::TextualFilter
- #valid? — BioTable::TableRow
- #write — BioTable::TabFormatter
- #write — BioTable::CsvFormatter
- #write — BioTable::EvalFormatter
- #write — BioTable::RDF::Writer
- #write — BioTable::Statistics::Accumulate
- #write — BioTable::Table
- #write — BioTable::TableWriter::Writer