class BioInterchange::GOXRef

Public Class Methods

AGI_LocusCode() click to toggle source

Returns the link-out URI for objects of “Arabidopsis Genome Initiative”.

# File lib/biointerchange/goxref.rb, line 6
def self.AGI_LocusCode
  RDF::URI.new("http://arabidopsis.org/servlets/TairObject?type=locus&name=")
end
ASAP() click to toggle source

Returns the link-out URI for objects of “A Systematic Annotation Package for Community Analysis of Genomes”.

# File lib/biointerchange/goxref.rb, line 21
def self.ASAP
  RDF::URI.new("https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=")
end
ApiDB_PlasmoDB() click to toggle source

Returns the link-out URI for objects of “PlasmoDB Plasmodium Genome Resource”.

# File lib/biointerchange/goxref.rb, line 11
def self.ApiDB_PlasmoDB
  RDF::URI.new("http://www.plasmodb.org/gene/")
end
AraCyc() click to toggle source

Returns the link-out URI for objects of “AraCyc metabolic pathway database for Arabidopsis thaliana”.

# File lib/biointerchange/goxref.rb, line 16
def self.AraCyc
  RDF::URI.new("http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=")
end
AspGD() click to toggle source

Returns the link-out URI for objects of “Aspergillus Genome Database”.

# File lib/biointerchange/goxref.rb, line 26
def self.AspGD
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=")
end
AspGD_LOCUS() click to toggle source

Returns the link-out URI for objects of “Aspergillus Genome Database”.

# File lib/biointerchange/goxref.rb, line 31
def self.AspGD_LOCUS
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=")
end
AspGD_REF() click to toggle source

Returns the link-out URI for objects of “Aspergillus Genome Database”.

# File lib/biointerchange/goxref.rb, line 36
def self.AspGD_REF
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=")
end
BFO() click to toggle source

Returns the link-out URI for objects of “Basic Formal Ontology”.

# File lib/biointerchange/goxref.rb, line 41
def self.BFO
  RDF::URI.new("http://purl.obolibrary.org/obo/BFO_")
end
BIOMD() click to toggle source

Returns the link-out URI for objects of “BioModels Database”.

# File lib/biointerchange/goxref.rb, line 51
def self.BIOMD
  RDF::URI.new("http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=")
end
BRENDA() click to toggle source

Returns the link-out URI for objects of “BRENDA, The Comprehensive Enzyme Information System”.

# File lib/biointerchange/goxref.rb, line 56
def self.BRENDA
  RDF::URI.new("http://www.brenda-enzymes.info/php/result_flat.php4?ecno=")
end
BioCyc() click to toggle source

Returns the link-out URI for objects of “BioCyc collection of metabolic pathway databases”.

# File lib/biointerchange/goxref.rb, line 46
def self.BioCyc
  RDF::URI.new("http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=")
end
Broad_MGG() click to toggle source

Returns the link-out URI for objects of “Magnaporthe grisea Database”.

# File lib/biointerchange/goxref.rb, line 61
def self.Broad_MGG
  RDF::URI.new("http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=S")
end
CASGEN() click to toggle source

Returns the link-out URI for objects of “Catalog of Fishes genus database”.

# File lib/biointerchange/goxref.rb, line 66
def self.CASGEN
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=")
end
CASREF() click to toggle source

Returns the link-out URI for objects of “Catalog of Fishes publications database”.

# File lib/biointerchange/goxref.rb, line 71
def self.CASREF
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getref.asp?id=")
end
CASSPC() click to toggle source

Returns the link-out URI for objects of “Catalog of Fishes species database”.

# File lib/biointerchange/goxref.rb, line 76
def self.CASSPC
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=1979")
end
CDD() click to toggle source

Returns the link-out URI for objects of “Conserved Domain Database at NCBI”.

# File lib/biointerchange/goxref.rb, line 81
def self.CDD
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=")
end
CGD() click to toggle source

Returns the link-out URI for objects of “Candida Genome Database”.

# File lib/biointerchange/goxref.rb, line 86
def self.CGD
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/locus.pl?dbid=")
end
CGD_LOCUS() click to toggle source

Returns the link-out URI for objects of “Candida Genome Database”.

# File lib/biointerchange/goxref.rb, line 91
def self.CGD_LOCUS
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/locus.pl?locus=")
end
CGD_REF() click to toggle source

Returns the link-out URI for objects of “Candida Genome Database”.

# File lib/biointerchange/goxref.rb, line 96
def self.CGD_REF
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=")
end
CHEBI() click to toggle source

Returns the link-out URI for objects of “Chemical Entities of Biological Interest”.

# File lib/biointerchange/goxref.rb, line 101
def self.CHEBI
  RDF::URI.new("http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:")
end
CL() click to toggle source

Returns the link-out URI for objects of “Cell Type Ontology”.

# File lib/biointerchange/goxref.rb, line 106
def self.CL
  RDF::URI.new("http://purl.obolibrary.org/obo/CL_")
end
COG_Cluster() click to toggle source

Returns the link-out URI for objects of “NCBI COG cluster”.

# File lib/biointerchange/goxref.rb, line 111
def self.COG_Cluster
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=")
end
COG_Function() click to toggle source

Returns the link-out URI for objects of “NCBI COG function”.

# File lib/biointerchange/goxref.rb, line 116
def self.COG_Function
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=")
end
COG_Pathway() click to toggle source

Returns the link-out URI for objects of “NCBI COG pathway”.

# File lib/biointerchange/goxref.rb, line 121
def self.COG_Pathway
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=")
end
CORUM() click to toggle source

Returns the link-out URI for objects of “CORUM - the Comprehensive Resource of Mammalian protein complexes”.

# File lib/biointerchange/goxref.rb, line 126
def self.CORUM
  RDF::URI.new("http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=")
end
DDBJ() click to toggle source

Returns the link-out URI for objects of “DNA Databank of Japan”.

# File lib/biointerchange/goxref.rb, line 136
def self.DDBJ
  RDF::URI.new("http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=")
end
DOI() click to toggle source

Returns the link-out URI for objects of “Digital Object Identifier”.

# File lib/biointerchange/goxref.rb, line 156
def self.DOI
  RDF::URI.new("http://dx.doi.org/DOI:")
end
EC() click to toggle source

Returns the link-out URI for objects of “Enzyme Commission”.

# File lib/biointerchange/goxref.rb, line 161
def self.EC
  RDF::URI.new("http://www.expasy.org/enzyme/")
end
ECK() click to toggle source

Returns the link-out URI for objects of “EcoGene Database of Escherichia coli Sequence and Function”.

# File lib/biointerchange/goxref.rb, line 171
def self.ECK
  RDF::URI.new("http://www.ecogene.org/geneInfo.php?eck_id=")
end
ECOGENE() click to toggle source

Returns the link-out URI for objects of “EcoGene Database of Escherichia coli Sequence and Function”.

# File lib/biointerchange/goxref.rb, line 186
def self.ECOGENE
  RDF::URI.new("http://www.ecogene.org/geneInfo.php?eg_id=")
end
EMBL() click to toggle source

Returns the link-out URI for objects of “EMBL Nucleotide Sequence Database”.

# File lib/biointerchange/goxref.rb, line 191
def self.EMBL
  RDF::URI.new("http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=")
end
ENA() click to toggle source

Returns the link-out URI for objects of “European Nucleotide Archive”.

# File lib/biointerchange/goxref.rb, line 196
def self.ENA
  RDF::URI.new("http://www.ebi.ac.uk/ena/data/view/")
end
ENSEMBL() click to toggle source

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.

# File lib/biointerchange/goxref.rb, line 201
def self.ENSEMBL
  RDF::URI.new("http://www.ensembl.org/id/")
end
ENSEMBL_GeneID() click to toggle source

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.

# File lib/biointerchange/goxref.rb, line 206
def self.ENSEMBL_GeneID
  RDF::URI.new("http://www.ensembl.org/id/")
end
ENSEMBL_ProteinID() click to toggle source

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.

# File lib/biointerchange/goxref.rb, line 211
def self.ENSEMBL_ProteinID
  RDF::URI.new("http://www.ensembl.org/id/")
end
ENSEMBL_TranscriptID() click to toggle source

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.

# File lib/biointerchange/goxref.rb, line 216
def self.ENSEMBL_TranscriptID
  RDF::URI.new("http://www.ensembl.org/id/")
end
ENZYME() click to toggle source

Returns the link-out URI for objects of “Swiss Institute of Bioinformatics enzyme database”.

# File lib/biointerchange/goxref.rb, line 221
def self.ENZYME
  RDF::URI.new("http://www.expasy.ch/cgi-bin/nicezyme.pl?")
end
EchoBASE() click to toggle source

Returns the link-out URI for objects of “EchoBASE post-genomic database for Escherichia coli”.

# File lib/biointerchange/goxref.rb, line 166
def self.EchoBASE
  RDF::URI.new("http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=")
end
EcoCyc() click to toggle source

Returns the link-out URI for objects of “Encyclopedia of E. coli metabolism”.

# File lib/biointerchange/goxref.rb, line 176
def self.EcoCyc
  RDF::URI.new("http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=")
end
EcoCyc_REF() click to toggle source

Returns the link-out URI for objects of “Encyclopedia of E. coli metabolism”.

# File lib/biointerchange/goxref.rb, line 181
def self.EcoCyc_REF
  RDF::URI.new("http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=")
end
FBbt() click to toggle source

Returns the link-out URI for objects of “Drosophila gross anatomy”.

# File lib/biointerchange/goxref.rb, line 226
def self.FBbt
  RDF::URI.new("http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:")
end
GDB() click to toggle source

Returns the link-out URI for objects of “Human Genome Database”.

# File lib/biointerchange/goxref.rb, line 231
def self.GDB
  RDF::URI.new("http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:")
end
GEO() click to toggle source

Returns the link-out URI for objects of “NCBI Gene Expression Omnibus”.

# File lib/biointerchange/goxref.rb, line 271
def self.GEO
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=")
end
GO() click to toggle source

Returns the link-out URI for objects of “Gene Ontology Database”.

# File lib/biointerchange/goxref.rb, line 276
def self.GO
  RDF::URI.new("http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:")
end
GONUTS() click to toggle source

Returns the link-out URI for objects of “Gene Ontology Normal Usage Tracking System (GONUTS)”.

# File lib/biointerchange/goxref.rb, line 286
def self.GONUTS
  RDF::URI.new("http://gowiki.tamu.edu/wiki/index.php/")
end
GO_REF() click to toggle source

Returns the link-out URI for objects of “Gene Ontology Database references”.

# File lib/biointerchange/goxref.rb, line 281
def self.GO_REF
  RDF::URI.new("http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:")
end
GR() click to toggle source

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.

# File lib/biointerchange/goxref.rb, line 291
def self.GR
  RDF::URI.new("http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=")
end
GR_GENE() click to toggle source

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.

# File lib/biointerchange/goxref.rb, line 296
def self.GR_GENE
  RDF::URI.new("http://www.gramene.org/db/genes/search_gene?acc=")
end
GR_PROTEIN() click to toggle source

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.

# File lib/biointerchange/goxref.rb, line 301
def self.GR_PROTEIN
  RDF::URI.new("http://www.gramene.org/db/protein/protein_search?acc=")
end
GR_QTL() click to toggle source

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.

# File lib/biointerchange/goxref.rb, line 306
def self.GR_QTL
  RDF::URI.new("http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=")
end
GR_REF() click to toggle source

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.

# File lib/biointerchange/goxref.rb, line 311
def self.GR_REF
  RDF::URI.new("http://www.gramene.org/db/literature/pub_search?ref_id=")
end
GenBank() click to toggle source

Returns the link-out URI for objects of “GenBank”.

# File lib/biointerchange/goxref.rb, line 236
def self.GenBank
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=")
end
Gene3D() click to toggle source

Returns the link-out URI for objects of “Domain Architecture Classification”.

# File lib/biointerchange/goxref.rb, line 241
def self.Gene3D
  RDF::URI.new("http://gene3d.biochem.ucl.ac.uk/superfamily/?accession=")
end
GeneDB_Gmorsitans() click to toggle source

Returns the link-out URI for objects of “Glossina morsitans GeneDB”.

# File lib/biointerchange/goxref.rb, line 246
def self.GeneDB_Gmorsitans
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=glossina&name=")
end
GeneDB_Lmajor() click to toggle source

Returns the link-out URI for objects of “Leishmania major GeneDB”.

# File lib/biointerchange/goxref.rb, line 251
def self.GeneDB_Lmajor
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=leish&name=")
end
GeneDB_Pfalciparum() click to toggle source

Returns the link-out URI for objects of “Plasmodium falciparum GeneDB”.

# File lib/biointerchange/goxref.rb, line 256
def self.GeneDB_Pfalciparum
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=malaria&name=")
end
GeneDB_Spombe() click to toggle source

Returns the link-out URI for objects of “Schizosaccharomyces pombe GeneDB”.

# File lib/biointerchange/goxref.rb, line 261
def self.GeneDB_Spombe
  RDF::URI.new("http://old.genedb.org/genedb/Search?organism=pombe&name=")
end
GeneDB_Tbrucei() click to toggle source

Returns the link-out URI for objects of “Trypanosoma brucei GeneDB”.

# File lib/biointerchange/goxref.rb, line 266
def self.GeneDB_Tbrucei
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=tryp&name=")
end
HAMAP() click to toggle source

Returns the link-out URI for objects of “High-quality Automated and Manual Annotation of microbial Proteomes”.

# File lib/biointerchange/goxref.rb, line 326
def self.HAMAP
  RDF::URI.new("http://us.expasy.org/unirules/")
end
HGNC() click to toggle source

Returns the link-out URI for objects of “HUGO Gene Nomenclature Committee”.

# File lib/biointerchange/goxref.rb, line 331
def self.HGNC
  RDF::URI.new("http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:")
end
HGNC_gene() click to toggle source

Returns the link-out URI for objects of “HUGO Gene Nomenclature Committee”.

# File lib/biointerchange/goxref.rb, line 336
def self.HGNC_gene
  RDF::URI.new("http://www.genenames.org/data/hgnc_data.php?app_sym=")
end
HPA() click to toggle source

Returns the link-out URI for objects of “Human Protein Atlas tissue profile information”.

# File lib/biointerchange/goxref.rb, line 341
def self.HPA
  RDF::URI.new("http://www.proteinatlas.org/tissue_profile.php?antibody_id=")
end
HPA_antibody() click to toggle source

Returns the link-out URI for objects of “Human Protein Atlas antibody information”.

# File lib/biointerchange/goxref.rb, line 346
def self.HPA_antibody
  RDF::URI.new("http://www.proteinatlas.org/antibody_info.php?antibody_id=")
end
H_invDB_cDNA() click to toggle source

Returns the link-out URI for objects of “H-invitational Database”.

# File lib/biointerchange/goxref.rb, line 316
def self.H_invDB_cDNA
  RDF::URI.new("http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=")
end
H_invDB_locus() click to toggle source

Returns the link-out URI for objects of “H-invitational Database”.

# File lib/biointerchange/goxref.rb, line 321
def self.H_invDB_locus
  RDF::URI.new("http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=")
end
IMG() click to toggle source

Returns the link-out URI for objects of “Integrated Microbial Genomes; JGI web site for genome annotation”.

# File lib/biointerchange/goxref.rb, line 351
def self.IMG
  RDF::URI.new("http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=")
end
ISBN() click to toggle source

Returns the link-out URI for objects of “International Standard Book Number”.

# File lib/biointerchange/goxref.rb, line 366
def self.ISBN
  RDF::URI.new("http://my.linkbaton.com/get?lbCC=q&nC=q&genre=book&item=")
end
IUPHAR_GPCR() click to toggle source

Returns the link-out URI for objects of “International Union of Pharmacology”.

# File lib/biointerchange/goxref.rb, line 371
def self.IUPHAR_GPCR
  RDF::URI.new("http://www.iuphar-db.org/DATABASE/FamilyMenuForward?familyId=")
end
IUPHAR_RECEPTOR() click to toggle source

Returns the link-out URI for objects of “International Union of Pharmacology”.

# File lib/biointerchange/goxref.rb, line 376
def self.IUPHAR_RECEPTOR
  RDF::URI.new("http://www.iuphar-db.org/DATABASE/ObjectDisplayForward?objectId=")
end
IntAct() click to toggle source

Returns the link-out URI for objects of “IntAct protein interaction database”.

# File lib/biointerchange/goxref.rb, line 356
def self.IntAct
  RDF::URI.new("http://www.ebi.ac.uk/intact/search/do/search?searchString=")
end
InterPro() click to toggle source

Returns the link-out URI for objects of “InterPro database of protein domains and motifs”.

# File lib/biointerchange/goxref.rb, line 361
def self.InterPro
  RDF::URI.new("http://www.ebi.ac.uk/interpro/IEntry?ac=")
end
JCVI_CMR() click to toggle source

Returns the link-out URI for objects of “Comprehensive Microbial Resource at the J. Craig Venter Institute”.

# File lib/biointerchange/goxref.rb, line 381
def self.JCVI_CMR
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=")
end
JCVI_EGAD() click to toggle source

Returns the link-out URI for objects of “Comprehensive Microbial Resource at the J. Craig Venter Institute”.

# File lib/biointerchange/goxref.rb, line 386
def self.JCVI_EGAD
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/EgadSearch.cgi?search_string=")
end
JCVI_GenProp() click to toggle source

Returns the link-out URI for objects of “Genome Properties database at the J. Craig Venter Institute”.

# File lib/biointerchange/goxref.rb, line 391
def self.JCVI_GenProp
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/shared/GenomePropDefinition.cgi?prop_acc=")
end
JCVI_Medtr() click to toggle source

Returns the link-out URI for objects of “Medicago truncatula genome database at the J. Craig Venter Institute ”.

# File lib/biointerchange/goxref.rb, line 396
def self.JCVI_Medtr
  RDF::URI.new("http://medicago.jcvi.org/cgi-bin/medicago/search/shared/ORF_infopage.cgi?orf=")
end
JCVI_TIGRFAMS() click to toggle source

Returns the link-out URI for objects of “TIGRFAMs HMM collection at the J. Craig Venter Institute”.

# File lib/biointerchange/goxref.rb, line 401
def self.JCVI_TIGRFAMS
  RDF::URI.new("http://search.jcvi.org/search?p&q=")
end
JSTOR() click to toggle source

Returns the link-out URI for objects of “Digital archive of scholarly articles”.

# File lib/biointerchange/goxref.rb, line 406
def self.JSTOR
  RDF::URI.new("http://www.jstor.org/stable/")
end
KEGG_ENZYME() click to toggle source

Returns the link-out URI for objects of “KEGG Enzyme Database”.

# File lib/biointerchange/goxref.rb, line 411
def self.KEGG_ENZYME
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?ec:")
end
KEGG_LIGAND() click to toggle source

Returns the link-out URI for objects of “KEGG LIGAND Database”.

# File lib/biointerchange/goxref.rb, line 416
def self.KEGG_LIGAND
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?cpd:")
end
KEGG_PATHWAY() click to toggle source

Returns the link-out URI for objects of “KEGG Pathways Database”.

# File lib/biointerchange/goxref.rb, line 421
def self.KEGG_PATHWAY
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?path:")
end
KEGG_REACTION() click to toggle source

Returns the link-out URI for objects of “KEGG Reaction Database”.

# File lib/biointerchange/goxref.rb, line 426
def self.KEGG_REACTION
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?rn:")
end
LIFEdb() click to toggle source

Returns the link-out URI for objects of “LifeDB”.

# File lib/biointerchange/goxref.rb, line 431
def self.LIFEdb
  RDF::URI.new("http://www.dkfz.de/LIFEdb/LIFEdb.aspx?ID=")
end
MA() click to toggle source

Returns the link-out URI for objects of “Adult Mouse Anatomical Dictionary”.

# File lib/biointerchange/goxref.rb, line 436
def self.MA
  RDF::URI.new("http://www.informatics.jax.org/searches/AMA.cgi?id=MA:")
end
MEROPS() click to toggle source

Returns the link-out URI for objects of “MEROPS peptidase database”.

# File lib/biointerchange/goxref.rb, line 451
def self.MEROPS
  RDF::URI.new("http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=")
end
MEROPS_fam() click to toggle source

Returns the link-out URI for objects of “MEROPS peptidase database”.

# File lib/biointerchange/goxref.rb, line 456
def self.MEROPS_fam
  RDF::URI.new("http://merops.sanger.ac.uk/cgi-bin/famsum?family=")
end
MGI() click to toggle source

Returns the link-out URI for objects of “Mouse Genome Informatics”.

# File lib/biointerchange/goxref.rb, line 471
def self.MGI
  RDF::URI.new("http://www.informatics.jax.org/accession/")
end
MIPS_funcat() click to toggle source

Returns the link-out URI for objects of “MIPS Functional Catalogue”.

# File lib/biointerchange/goxref.rb, line 476
def self.MIPS_funcat
  RDF::URI.new("http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=")
end
MO() click to toggle source

Returns the link-out URI for objects of “MGED Ontology”.

# File lib/biointerchange/goxref.rb, line 481
def self.MO
  RDF::URI.new("http://mged.sourceforge.net/ontologies/MGEDontology.php#")
end
MaizeGDB() click to toggle source

Returns the link-out URI for objects of “MaizeGDB”.

# File lib/biointerchange/goxref.rb, line 441
def self.MaizeGDB
  RDF::URI.new("http://www.maizegdb.org/cgi-bin/id_search.cgi?id=")
end
MaizeGDB_Locus() click to toggle source

Returns the link-out URI for objects of “MaizeGDB”.

# File lib/biointerchange/goxref.rb, line 446
def self.MaizeGDB_Locus
  RDF::URI.new("http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=")
end
MeSH() click to toggle source

Returns the link-out URI for objects of “Medical Subject Headings”.

# File lib/biointerchange/goxref.rb, line 461
def self.MeSH
  RDF::URI.new("http://www.nlm.nih.gov/cgi/mesh/2005/MB_cgi?mode=&term=")
end
MetaCyc() click to toggle source

Returns the link-out URI for objects of “Metabolic Encyclopedia of metabolic and other pathways”.

# File lib/biointerchange/goxref.rb, line 466
def self.MetaCyc
  RDF::URI.new("http://biocyc.org/META/NEW-IMAGE?type=NIL&object=")
end
ModBase() click to toggle source

Returns the link-out URI for objects of “ModBase comprehensive Database of Comparative Protein Structure Models”.

# File lib/biointerchange/goxref.rb, line 486
def self.ModBase
  RDF::URI.new("http://salilab.org/modbase/searchbyid?databaseID=")
end
NASC_code() click to toggle source

Returns the link-out URI for objects of “Nottingham Arabidopsis Stock Centre Seeds Database”.

# File lib/biointerchange/goxref.rb, line 491
def self.NASC_code
  RDF::URI.new("http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=")
end
NCBI_GP() click to toggle source

Returns the link-out URI for objects of “NCBI GenPept”.

# File lib/biointerchange/goxref.rb, line 506
def self.NCBI_GP
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=")
end
NCBI_Gene() click to toggle source

Returns the link-out URI for objects of “NCBI Gene”.

# File lib/biointerchange/goxref.rb, line 496
def self.NCBI_Gene
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=gene&list_uids=")
end
NCBI_gi() click to toggle source

Returns the link-out URI for objects of “NCBI databases”.

# File lib/biointerchange/goxref.rb, line 501
def self.NCBI_gi
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end
NIF_Subcellular() click to toggle source

Returns the link-out URI for objects of “Neuroscience Information Framework standard ontology, subcellular hierarchy”.

# File lib/biointerchange/goxref.rb, line 511
def self.NIF_Subcellular
  RDF::URI.new("http://www.neurolex.org/wiki/")
end
NMPDR() click to toggle source

Returns the link-out URI for objects of “National Microbial Pathogen Data Resource”.

# File lib/biointerchange/goxref.rb, line 516
def self.NMPDR
  RDF::URI.new("http://www.nmpdr.org/linkin.cgi?id=")
end
OMIM() click to toggle source

Returns the link-out URI for objects of “Mendelian Inheritance in Man”.

# File lib/biointerchange/goxref.rb, line 521
def self.OMIM
  RDF::URI.new("http://omim.org/entry/")
end
PAMGO_GAT() click to toggle source

Returns the link-out URI for objects of “Genome Annotation Tool (Agrobacterium tumefaciens C58); PAMGO Interest Group”.

# File lib/biointerchange/goxref.rb, line 526
def self.PAMGO_GAT
  RDF::URI.new("http://agro.vbi.vt.edu/public/servlet/GeneEdit?&Search=Search&level=2&genename=")
end
PAMGO_MGG() click to toggle source

Returns the link-out URI for objects of “Magnaporthe grisea database”.

# File lib/biointerchange/goxref.rb, line 531
def self.PAMGO_MGG
  RDF::URI.new("http://scotland.fgl.ncsu.edu/cgi-bin/adHocQuery.cgi?adHocQuery_dbName=smeng_goannotation&Action=Data&QueryName=Functional+Categorization+of+MGG+GO+Annotation&P_KeyWord=")
end
PAMGO_VMD() click to toggle source

Returns the link-out URI for objects of “Virginia Bioinformatics Institute Microbial Database”.

# File lib/biointerchange/goxref.rb, line 536
def self.PAMGO_VMD
  RDF::URI.new("http://vmd.vbi.vt.edu/cgi-bin/browse/go_detail.cgi?gene_id=")
end
PANTHER() click to toggle source

Returns the link-out URI for objects of “Protein ANalysis THrough Evolutionary Relationships”.

# File lib/biointerchange/goxref.rb, line 541
def self.PANTHER
  RDF::URI.new("http://pantree.org/node/annotationNode.jsp?id=")
end
PATRIC() click to toggle source

Returns the link-out URI for objects of “PathoSystems Resource Integration Center”.

# File lib/biointerchange/goxref.rb, line 546
def self.PATRIC
  RDF::URI.new("http://patric.vbi.vt.edu/gene/overview.php?fid=")
end
PDB() click to toggle source

Returns the link-out URI for objects of “Protein Data Bank”.

# File lib/biointerchange/goxref.rb, line 551
def self.PDB
  RDF::URI.new("http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=")
end
PIR() click to toggle source

Returns the link-out URI for objects of “Protein Information Resource”.

# File lib/biointerchange/goxref.rb, line 566
def self.PIR
  RDF::URI.new("http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=")
end
PIRSF() click to toggle source

Returns the link-out URI for objects of “PIR Superfamily Classification System”.

# File lib/biointerchange/goxref.rb, line 571
def self.PIRSF
  RDF::URI.new("http://pir.georgetown.edu/cgi-bin/ipcSF?id=")
end
PMCID() click to toggle source

Returns the link-out URI for objects of “Pubmed Central”.

# File lib/biointerchange/goxref.rb, line 576
def self.PMCID
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/entrez?db=pmc&cmd=search&term=")
end
PMID() click to toggle source

Returns the link-out URI for objects of “PubMed”.

# File lib/biointerchange/goxref.rb, line 581
def self.PMID
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/pubmed/")
end
PO() click to toggle source

Returns the link-out URI for objects of “Plant Ontology Consortium Database”.

# File lib/biointerchange/goxref.rb, line 586
def self.PO
  RDF::URI.new("http://www.plantontology.org/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=PO:")
end
PO_REF() click to toggle source

Returns the link-out URI for objects of “Plant Ontology custom references”.

# File lib/biointerchange/goxref.rb, line 591
def self.PO_REF
  RDF::URI.new("http://wiki.plantontology.org:8080/index.php/PO_REF:")
end
PR() click to toggle source

Returns the link-out URI for objects of “Protein Ontology”.

# File lib/biointerchange/goxref.rb, line 601
def self.PR
  RDF::URI.new("http://www.proconsortium.org/cgi-bin/pro/entry_pro?id=PR:")
end
PRINTS() click to toggle source

Returns the link-out URI for objects of “PRINTS compendium of protein fingerprints”.

# File lib/biointerchange/goxref.rb, line 606
def self.PRINTS
  RDF::URI.new("http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=")
end
PSI_MOD() click to toggle source

Returns the link-out URI for objects of “Proteomics Standards Initiative protein modification ontology”.

# File lib/biointerchange/goxref.rb, line 626
def self.PSI_MOD
  RDF::URI.new("http://www.ebi.ac.uk/ontology-lookup/?termId=MOD:")
end
Pfam() click to toggle source

Returns the link-out URI for objects of “Pfam database of protein families”.

# File lib/biointerchange/goxref.rb, line 556
def self.Pfam
  RDF::URI.new("http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?")
end
PharmGKB() click to toggle source

Returns the link-out URI for objects of “Pharmacogenetics and Pharmacogenomics Knowledge Base”.

# File lib/biointerchange/goxref.rb, line 561
def self.PharmGKB
  RDF::URI.new("http://www.pharmgkb.org/do/serve?objId=")
end
PomBase() click to toggle source

Returns the link-out URI for objects of “PomBase”.

# File lib/biointerchange/goxref.rb, line 596
def self.PomBase
  RDF::URI.new("http://www.pombase.org/spombe/result/")
end
ProDom() click to toggle source

Returns the link-out URI for objects of “ProDom protein domain families”.

# File lib/biointerchange/goxref.rb, line 611
def self.ProDom
  RDF::URI.new("http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=")
end
Prosite() click to toggle source

Returns the link-out URI for objects of “Prosite database of protein families and domains”.

# File lib/biointerchange/goxref.rb, line 616
def self.Prosite
  RDF::URI.new("http://www.expasy.ch/cgi-bin/prosite-search-ac?")
end
PseudoCAP() click to toggle source

Returns the link-out URI for objects of “Pseudomonas Genome Project”.

# File lib/biointerchange/goxref.rb, line 621
def self.PseudoCAP
  RDF::URI.new("http://v2.pseudomonas.com/getAnnotation.do?locusID=")
end
PubChem_BioAssay() click to toggle source

Returns the link-out URI for objects of “NCBI PubChem database of bioassay records”.

# File lib/biointerchange/goxref.rb, line 631
def self.PubChem_BioAssay
  RDF::URI.new("http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=")
end
PubChem_Compound() click to toggle source

Returns the link-out URI for objects of “NCBI PubChem database of chemical structures”.

# File lib/biointerchange/goxref.rb, line 636
def self.PubChem_Compound
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pccompound&term=")
end
PubChem_Substance() click to toggle source

Returns the link-out URI for objects of “NCBI PubChem database of chemical substances”.

# File lib/biointerchange/goxref.rb, line 641
def self.PubChem_Substance
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=")
end
RGD() click to toggle source

Returns the link-out URI for objects of “Rat Genome Database”.

# File lib/biointerchange/goxref.rb, line 671
def self.RGD
  RDF::URI.new("http://rgd.mcw.edu/generalSearch/RgdSearch.jsp?quickSearch=1&searchKeyword=")
end
RHEA() click to toggle source

Returns the link-out URI for objects of “Rhea, the Annotated Reactions Database”.

# File lib/biointerchange/goxref.rb, line 676
def self.RHEA
  RDF::URI.new("http://www.ebi.ac.uk/rhea/reaction.xhtml?id=")
end
RNAmods() click to toggle source

Returns the link-out URI for objects of “RNA Modification Database”.

# File lib/biointerchange/goxref.rb, line 681
def self.RNAmods
  RDF::URI.new("http://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?")
end
RO() click to toggle source

Returns the link-out URI for objects of “OBO Relation Ontology Ontology”.

# File lib/biointerchange/goxref.rb, line 686
def self.RO
  RDF::URI.new("http://purl.obolibrary.org/obo/RO_")
end
Reactome() click to toggle source

Returns the link-out URI for objects of “Reactome - a curated knowledgebase of biological pathways”.

# File lib/biointerchange/goxref.rb, line 646
def self.Reactome
  RDF::URI.new("http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=")
end
RefSeq() click to toggle source

Returns the link-out URI for objects of “RefSeq”.

# File lib/biointerchange/goxref.rb, line 651
def self.RefSeq
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end
RefSeq_NA() click to toggle source

Returns the link-out URI for objects of “RefSeq (Nucleic Acid)”.

# File lib/biointerchange/goxref.rb, line 656
def self.RefSeq_NA
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end
RefSeq_Prot() click to toggle source

Returns the link-out URI for objects of “RefSeq (Protein)”.

# File lib/biointerchange/goxref.rb, line 661
def self.RefSeq_Prot
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end
Rfam() click to toggle source

Returns the link-out URI for objects of “Rfam database of RNA families”.

# File lib/biointerchange/goxref.rb, line 666
def self.Rfam
  RDF::URI.new("http://rfam.sanger.ac.uk/family/")
end
SABIO_RK() click to toggle source

Returns the link-out URI for objects of “SABIO Reaction Kinetics”.

# File lib/biointerchange/goxref.rb, line 691
def self.SABIO_RK
  RDF::URI.new("http://sabio.villa-bosch.de/reacdetails.jsp?reactid=")
end
SEED() click to toggle source

Returns the link-out URI for objects of “The SEED;”.

# File lib/biointerchange/goxref.rb, line 696
def self.SEED
  RDF::URI.new("http://www.theseed.org/linkin.cgi?id=")
end
SGD() click to toggle source

Returns the link-out URI for objects of “Saccharomyces Genome Database”.

# File lib/biointerchange/goxref.rb, line 701
def self.SGD
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=")
end
SGD_LOCUS() click to toggle source

Returns the link-out URI for objects of “Saccharomyces Genome Database”.

# File lib/biointerchange/goxref.rb, line 706
def self.SGD_LOCUS
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/locus.pl?locus=")
end
SGD_REF() click to toggle source

Returns the link-out URI for objects of “Saccharomyces Genome Database”.

# File lib/biointerchange/goxref.rb, line 711
def self.SGD_REF
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid=")
end
SGN() click to toggle source

Returns the link-out URI for objects of “Sol Genomics Network”.

# File lib/biointerchange/goxref.rb, line 716
def self.SGN
  RDF::URI.new("http://www.sgn.cornell.edu/phenome/locus_display.pl?locus_id=")
end
SGN_ref() click to toggle source

Returns the link-out URI for objects of “Sol Genomics Network”.

# File lib/biointerchange/goxref.rb, line 721
def self.SGN_ref
  RDF::URI.new("http://www.sgn.cornell.edu/chado/publication.pl?pub_id=")
end
SMART() click to toggle source

Returns the link-out URI for objects of “Simple Modular Architecture Research Tool”.

# File lib/biointerchange/goxref.rb, line 726
def self.SMART
  RDF::URI.new("http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=")
end
SO() click to toggle source

Returns the link-out URI for objects of “Sequence Ontology”.

# File lib/biointerchange/goxref.rb, line 731
def self.SO
  RDF::URI.new("http://song.sourceforge.net/SOterm_tables.html#SO:")
end
SUPERFAMILY() click to toggle source

Returns the link-out URI for objects of “SUPERFAMILY protein annotation database”.

# File lib/biointerchange/goxref.rb, line 736
def self.SUPERFAMILY
  RDF::URI.new("http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF")
end
Swiss_Prot() click to toggle source

Returns the link-out URI for objects of “UniProtKB/Swiss-Prot”.

# File lib/biointerchange/goxref.rb, line 741
def self.Swiss_Prot
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end
TAIR() click to toggle source

Returns the link-out URI for objects of “The Arabidopsis Information Resource”.

# File lib/biointerchange/goxref.rb, line 746
def self.TAIR
  RDF::URI.new("http://arabidopsis.org/servlets/TairObject?accession=")
end
TC() click to toggle source

Returns the link-out URI for objects of “Transport Protein Database”.

# File lib/biointerchange/goxref.rb, line 756
def self.TC
  RDF::URI.new("http://www.tcdb.org/tcdb/index.php?tc=")
end
TGD_LOCUS() click to toggle source

Returns the link-out URI for objects of “Tetrahymena Genome Database”.

# File lib/biointerchange/goxref.rb, line 761
def self.TGD_LOCUS
  RDF::URI.new("http://db.ciliate.org/cgi-bin/locus.pl?locus=")
end
TGD_REF() click to toggle source

Returns the link-out URI for objects of “Tetrahymena Genome Database”.

# File lib/biointerchange/goxref.rb, line 766
def self.TGD_REF
  RDF::URI.new("http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=")
end
TrEMBL() click to toggle source

Returns the link-out URI for objects of “UniProtKB-TrEMBL protein sequence database”.

# File lib/biointerchange/goxref.rb, line 771
def self.TrEMBL
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end
UBERON() click to toggle source

Returns the link-out URI for objects of “Uber-anatomy ontology”.

# File lib/biointerchange/goxref.rb, line 776
def self.UBERON
  RDF::URI.new("http://purl.obolibrary.org/obo/UBERON_")
end
UM_BBD_enzymeID() click to toggle source

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.

# File lib/biointerchange/goxref.rb, line 781
def self.UM_BBD_enzymeID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=ep&enzymeID=")
end
UM_BBD_reactionID() click to toggle source

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.

# File lib/biointerchange/goxref.rb, line 786
def self.UM_BBD_reactionID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=r&reacID=")
end
UM_BBD_ruleID() click to toggle source

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.

# File lib/biointerchange/goxref.rb, line 791
def self.UM_BBD_ruleID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/rule.jsp?rule=")
end
UniMod() click to toggle source

Returns the link-out URI for objects of “UniMod”.

# File lib/biointerchange/goxref.rb, line 796
def self.UniMod
  RDF::URI.new("http://www.unimod.org/modifications_view.php?editid1=")
end
UniParc() click to toggle source

Returns the link-out URI for objects of “UniProt Archive”.

# File lib/biointerchange/goxref.rb, line 801
def self.UniParc
  RDF::URI.new("http://www.uniprot.org/uniparc/")
end
UniPathway() click to toggle source

Returns the link-out URI for objects of “UniPathway”.

# File lib/biointerchange/goxref.rb, line 806
def self.UniPathway
  RDF::URI.new("http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=")
end
UniProtKB() click to toggle source

Returns the link-out URI for objects of “Universal Protein Knowledgebase”.

# File lib/biointerchange/goxref.rb, line 811
def self.UniProtKB
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end
UniProtKB_KW() click to toggle source

Returns the link-out URI for objects of “UniProt Knowledgebase keywords”.

# File lib/biointerchange/goxref.rb, line 816
def self.UniProtKB_KW
  RDF::URI.new("http://www.uniprot.org/keywords/")
end
UniProtKB_SubCell() click to toggle source

Returns the link-out URI for objects of “UniProt Knowledgebase Subcellular Location vocabulary”.

# File lib/biointerchange/goxref.rb, line 821
def self.UniProtKB_SubCell
  RDF::URI.new("http://www.uniprot.org/locations/")
end
VBRC() click to toggle source

Returns the link-out URI for objects of “Viral Bioinformatics Resource Center”.

# File lib/biointerchange/goxref.rb, line 826
def self.VBRC
  RDF::URI.new("http://vbrc.org/query.asp?web_id=VBRC:")
end
VEGA() click to toggle source

Returns the link-out URI for objects of “Vertebrate Genome Annotation database”.

# File lib/biointerchange/goxref.rb, line 831
def self.VEGA
  RDF::URI.new("http://vega.sanger.ac.uk/perl/searchview?species=all&idx=All&q=")
end
VMD() click to toggle source

Returns the link-out URI for objects of “Virginia Bioinformatics Institute Microbial Database”.

# File lib/biointerchange/goxref.rb, line 836
def self.VMD
  RDF::URI.new("http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?gene_id=")
end
WB() click to toggle source

Returns the link-out URI for objects of “WormBase database of nematode biology”.

# File lib/biointerchange/goxref.rb, line 841
def self.WB
  RDF::URI.new("http://www.wormbase.org/db/gene/gene?name=")
end
WB_REF() click to toggle source

Returns the link-out URI for objects of “WormBase database of nematode biology”.

# File lib/biointerchange/goxref.rb, line 846
def self.WB_REF
  RDF::URI.new("http://www.wormbase.org/db/misc/paper?name=")
end
WP() click to toggle source

Returns the link-out URI for objects of “Wormpep database of proteins of C. elegans”.

# File lib/biointerchange/goxref.rb, line 856
def self.WP
  RDF::URI.new("http://www.wormbase.org/db/get?class=Protein;name=WP:")
end
Wikipedia() click to toggle source

Returns the link-out URI for objects of “Wikipedia”.

# File lib/biointerchange/goxref.rb, line 851
def self.Wikipedia
  RDF::URI.new("http://en.wikipedia.org/wiki/")
end
ZFIN() click to toggle source

Returns the link-out URI for objects of “Zebrafish Information Network”.

# File lib/biointerchange/goxref.rb, line 861
def self.ZFIN
  RDF::URI.new("http://zfin.org/cgi-bin/ZFIN_jump?record=")
end
dbSNP() click to toggle source

Returns the link-out URI for objects of “NCBI dbSNP”.

# File lib/biointerchange/goxref.rb, line 131
def self.dbSNP
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=")
end
dictyBase() click to toggle source

Returns the link-out URI for objects of “dictyBase”.

# File lib/biointerchange/goxref.rb, line 141
def self.dictyBase
  RDF::URI.new("http://dictybase.org/gene/")
end
dictyBase_REF() click to toggle source

Returns the link-out URI for objects of “dictyBase literature references”.

# File lib/biointerchange/goxref.rb, line 151
def self.dictyBase_REF
  RDF::URI.new("http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=")
end
dictyBase_gene_name() click to toggle source

Returns the link-out URI for objects of “dictyBase”.

# File lib/biointerchange/goxref.rb, line 146
def self.dictyBase_gene_name
  RDF::URI.new("http://dictybase.org/gene/")
end
taxon() click to toggle source

Returns the link-out URI for objects of “NCBI Taxonomy”.

# File lib/biointerchange/goxref.rb, line 751
def self.taxon
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=")
end