Table of Contents - crysna-0.0.4 Documentation
Pages
Classes and Modules
- Crysna
- Crysna::Atom
- Crysna::Cell
- Crysna::Cell::DuplicateSiteError
- Crysna::Cell::NoEntryError
- Crysna::Cell::TypeError
- Crysna::ModelStructure
- Crysna::ModelStructure::InitializeError
- Crysna::ModelStructure::NoEntrySiteError
- Crysna::ModelStructure::SiteDetectionError
- Crysna::ModelStructure::SiteRangeError
- Crysna::ModelStructure::SiteVolumeError
- Crysna::OptionManager
- Crysna::OptionManager::INVARID_OPTION
- Crysna::Site
- Crysna::Site::NotSetInternalVectorError
- Crysna::SiteConfiguration
- Crysna::SiteWithPosition
- Crysna::TransitionFinder
- Crysna::TransitionFinder::Cell
- Crysna::TransitionFinder::Cell::RangeError
- Crysna::TransitionFinder::CellManager
- Crysna::TransitionFinder::Edge
- Crysna::TransitionFinder::Edge::InitializeError
- CrystalCell
- CrystalCell::Cell
- FrameAtom
- FrameInterstitialCell
- FrameInterstitialCell::NoMatchError
- FrameInterstitialCell::TypeError
- InterstitialAtom
- SiteNameLabeledCell
- SiteNameLabeledCell::InitializeError
- SiteNameLabeledCell::OutOfCellError
- SiteNameLabeledCell::RangeError
- SiteNameLabeledCell::TypeError
Methods
- ::check_inside_all_sites — SiteNameLabeledCell
- ::generate_cell — Crysna::SiteConfiguration
- ::label_sitenames — SiteNameLabeledCell
- ::labeled_all_atoms? — SiteNameLabeledCell
- ::load_file — Crysna::Cell
- ::load_file — Crysna::ModelStructure
- ::nearest_site — SiteNameLabeledCell
- ::new — Crysna::Atom
- ::new — Crysna::Cell
- ::new — FrameInterstitialCell
- ::new — Crysna::ModelStructure
- ::new — Crysna::OptionManager
- ::new — Crysna::Site
- ::new — Crysna::SiteConfiguration
- ::new — SiteNameLabeledCell
- ::new — Crysna::SiteWithPosition
- ::new — Crysna::TransitionFinder
- ::new — Crysna::TransitionFinder::Cell
- ::new — Crysna::TransitionFinder::CellManager
- ::new — Crysna::TransitionFinder::Edge
- ::new_elems_sitenames — Crysna::Cell
- ::periodically_translate_atoms_to_nearest_site — SiteNameLabeledCell
- ::unique_sitenames? — SiteNameLabeledCell
- #<=> — Crysna::Atom
- #<=> — Crysna::Cell
- #== — Crysna::Atom
- #== — Crysna::Cell
- #== — Crysna::Site
- #== — Crysna::TransitionFinder::Cell
- #== — Crysna::TransitionFinder::Edge
- #[] — Crysna::Cell
- #[] — Crysna::TransitionFinder::CellManager
- #add — Crysna::TransitionFinder::CellManager
- #add_atom — Crysna::Cell
- #added_sites — Crysna::Cell
- #ascend — Crysna::TransitionFinder::CellManager
- #atoms — Crysna::Cell
- #atoms_of_element — Crysna::Cell
- #center_of_atoms — SiteNameLabeledCell
- #center_of_sites — SiteNameLabeledCell
- #centering — Crysna::Atom
- #centering — Crysna::Cell
- #centering! — Crysna::Atom
- #centering! — Crysna::Cell
- #check_volume — Crysna::ModelStructure
- #choose_zyx — Crysna::ModelStructure
- #configuration_string — Crysna::Cell
- #configuration_string_full — Crysna::Cell
- #contain_periodically_shift_cells? — Crysna::TransitionFinder::CellManager
- #coordinates — Crysna::SiteWithPosition
- #each_sort — Crysna::TransitionFinder
- #elements — Crysna::Cell
- #elements_names — FrameInterstitialCell
- #equal? — Crysna::Site
- #equivalent_cells — FrameInterstitialCell
- #expand_edges — Crysna::TransitionFinder
- #find_interstitial_site — Crysna::ModelStructure
- #find_nearest_frame_site — Crysna::ModelStructure
- #find_path — Crysna::TransitionFinder
- #find_periodically_candidate — Crysna::TransitionFinder
- #find_site — Crysna::ModelStructure
- #frame_atoms — FrameInterstitialCell
- #frame_cell — FrameInterstitialCell
- #from_to_node_indices — Crysna::TransitionFinder
- #full_sitename — Crysna::Atom
- #ideal_interstitial_sites — Crysna::ModelStructure
- #index_same_atoms — Crysna::TransitionFinder::CellManager
- #index_same_sites — Crysna::TransitionFinder::CellManager
- #inspect_short — Crysna::TransitionFinder::Cell
- #interstitial_atoms — FrameInterstitialCell
- #interstitial_cell — FrameInterstitialCell
- #meet_transit_cells — Crysna::TransitionFinder
- #migrate — Crysna::Atom
- #migrate — Crysna::TransitionFinder::Cell
- #migrate! — Crysna::Atom
- #migrate! — Crysna::TransitionFinder::Cell
- #minimize — Crysna::Cell
- #minimum_operation — Crysna::TransitionFinder
- #nearest_atom_index — SiteNameLabeledCell
- #occupied_sitename — Crysna::TransitionFinder::Cell
- #octahedra — Crysna::ModelStructure
- #operate — Crysna::Cell
- #operate — Crysna::TransitionFinder::Cell
- #optimized_cell — FrameInterstitialCell
- #parse! — Crysna::OptionManager
- #periodically_equal? — Crysna::TransitionFinder::Cell
- #periodically_shift_indices — Crysna::TransitionFinder::CellManager
- #polyhedra — Crysna::ModelStructure
- #reach — Crysna::TransitionFinder::Cell
- #reach — Crysna::TransitionFinder::CellManager
- #reach? — Crysna::TransitionFinder::Cell
- #reach_unreach_edges — Crysna::TransitionFinder
- #reset — Crysna::TransitionFinder::Cell
- #same_atoms? — Crysna::TransitionFinder::Cell
- #same_globla_vector? — Crysna::Site
- #same_sites? — Crysna::TransitionFinder::Cell
- #select_interstitial_sites27 — Crysna::ModelStructure
- #set_candidate — Crysna::OptionManager
- #set_cells — Crysna::OptionManager
- #set_combination — Crysna::OptionManager
- #set_fitted — Crysna::OptionManager
- #set_migration — Crysna::OptionManager
- #set_model — Crysna::OptionManager
- #set_occupied — Crysna::OptionManager
- #set_operation — Crysna::OptionManager
- #set_quiet — Crysna::OptionManager
- #set_single — Crysna::OptionManager
- #set_symid — Crysna::OptionManager
- #set_symmetry — Crysna::OptionManager
- #set_unique — Crysna::OptionManager
- #site_names — Crysna::ModelStructure
- #sitename — Crysna::Atom
- #sitenames_elements — SiteNameLabeledCell
- #sitenames_positions — SiteNameLabeledCell
- #sites — Crysna::Cell
- #sum_square_distances — SiteNameLabeledCell
- #tetrahedra — Crysna::ModelStructure
- #to_cell — Crysna::Cell
- #to_cell — SiteNameLabeledCell
- #to_coord — Crysna::ModelStructure
- #to_ficell — CrystalCell::Cell
- #to_snlcell — CrystalCell::Cell
- #to_yaml — Crysna::Cell
- #two_indices — Crysna::TransitionFinder
- #write_dot — Crysna::TransitionFinder
- #write_log_cell — Crysna::TransitionFinder
- #write_log_state — Crysna::TransitionFinder
- #write_path — Crysna::TransitionFinder