Table of Contents - cytogenetics-0.0.2 Documentation
Classes and Modules
- Cytogenetics
- Cytogenetics::Aberration
- Cytogenetics::BandReader
- Cytogenetics::Breakpoint
- Cytogenetics::Chromosome
- Cytogenetics::ChromosomeAberrations
- Cytogenetics::ChromosomeAberrations::Addition
- Cytogenetics::ChromosomeAberrations::ChromosomeFragment
- Cytogenetics::ChromosomeAberrations::ChromosomeGain
- Cytogenetics::ChromosomeAberrations::ChromosomeLoss
- Cytogenetics::ChromosomeAberrations::Deletion
- Cytogenetics::ChromosomeAberrations::Derivative
- Cytogenetics::ChromosomeAberrations::DicentricChromosome
- Cytogenetics::ChromosomeAberrations::Duplication
- Cytogenetics::ChromosomeAberrations::Insertion
- Cytogenetics::ChromosomeAberrations::Inversion
- Cytogenetics::ChromosomeAberrations::Isochromosome
- Cytogenetics::ChromosomeAberrations::Translocation
- Cytogenetics::Fragment
- Cytogenetics::Karyotype
- Cytogenetics::KaryotypeError
- Cytogenetics::KaryotypeReader
- Cytogenetics::StructureError
Methods
- ::aberration_objs — Cytogenetics::Aberration
- ::aberration_type — Cytogenetics::Aberration
- ::all_regex — Cytogenetics::Aberration
- ::calculate_ploidy — Cytogenetics::KaryotypeReader
- ::classify_aberration — Cytogenetics::Aberration
- ::cleanup — Cytogenetics::KaryotypeReader
- ::config_logging — Cytogenetics::KaryotypeReader
- ::determine_sex — Cytogenetics::KaryotypeReader
- ::instantiate_aberrations — Cytogenetics::Aberration
- ::karyotype — Cytogenetics
- ::logger — Cytogenetics
- ::logger= — Cytogenetics
- ::new — Cytogenetics::Aberration
- ::new — Cytogenetics::Breakpoint
- ::new — Cytogenetics::Chromosome
- ::new — Cytogenetics::ChromosomeAberrations::ChromosomeGain
- ::new — Cytogenetics::ChromosomeAberrations::ChromosomeLoss
- ::new — Cytogenetics::Fragment
- ::new — Cytogenetics::Karyotype
- ::regex — Cytogenetics::Aberration
- ::type — Cytogenetics::Aberration
- #aberration — Cytogenetics::Chromosome
- #add_fragments — Cytogenetics::ChromosomeAberrations::Derivative
- #add_gene — Cytogenetics::Fragment
- #analyze — Cytogenetics::Karyotype
- #arm — Cytogenetics::Breakpoint
- #bands — Cytogenetics::BandReader
- #breakpoints — Cytogenetics::Chromosome
- #config_logging — Cytogenetics::Aberration
- #config_logging — Cytogenetics::Breakpoint
- #config_logging — Cytogenetics::Chromosome
- #config_logging — Cytogenetics::Fragment
- #config_logging — Cytogenetics::Karyotype
- #find_bands — Cytogenetics::Aberration
- #find_chr — Cytogenetics::Aberration
- #find_fragments — Cytogenetics::Aberration
- #fragments — Cytogenetics::Chromosome
- #get_breakpoints — Cytogenetics::Aberration
- #get_breakpoints — Cytogenetics::ChromosomeAberrations::Derivative
- #get_breakpoints — Cytogenetics::ChromosomeAberrations::Translocation
- #handle_ploidy_diff — Cytogenetics::Karyotype
- #prep_karyotype — Cytogenetics::Karyotype
- #read_file — Cytogenetics::BandReader
- #remove_breakpoint — Cytogenetics::Aberration
- #report_breakpoints — Cytogenetics::Karyotype
- #report_fragments — Cytogenetics::Karyotype
- #report_ploidy_change — Cytogenetics::Karyotype
- #setup_abberation_objs — Cytogenetics::Karyotype
- #summarize — Cytogenetics::Karyotype
- #to_s — Cytogenetics::Aberration
- #to_s — Cytogenetics::Breakpoint
- #to_s — Cytogenetics::Chromosome
- #to_s — Cytogenetics::Fragment