Work on pepxml is from the original mspire library, whose license is duplicated here:
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Copyright © 2006, The University of Texas at Austin(“U.T. Austin”). All rights reserved.
Software by John T. Prince under the direction of Edward M. Marcotte.
By using this software the USER indicates that he or she has read, understood and will comply with the following:
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Austin hereby grants USER permission to use, copy, modify, merge,
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publish, distribute, sublicense, and/or sell copies of this software and its documentation for any purpose and without fee, provided that a full copy of this notice is included with the software and its documentation.
Title to copyright this software and its associated documentation shall at all times remain with U. T. Austin. No right is granted to use in advertising, publicity or otherwise any trademark, service mark, or the name of U. T. Austin.
This software and any associated documentation are provided “as is,” and U. T. AUSTIN MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESSED OR IMPLIED, INCLUDING THOSE OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT USE OF THE SOFTWARE, MODIFICATIONS, OR ASSOCIATED DOCUMENTATION WILL NOT INFRINGE ANY PATENTS, COPYRIGHTS, TRADEMARKS OR OTHER INTELLECTUAL PROPERTY RIGHTS OF A THIRD PARTY. U. T. Austin, The University of Texas System, its Regents, officers, and employees shall not be liable under any circumstances for any direct, indirect, special, incidental, or consequential damages with respect to any claim by USER or any third party on account of or arising from the use, or inability to use, this software or its associated documentation, even if U.
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Austin has been advised of the possibility of those damages.
Submit software operation questions to: Edward M. Marcotte, Department of Chemistry and Biochemistry, U. T. Austin, Austin, Texas 78712.
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The rest of the work (and modifications) are licensed here:
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Copyright © 2011 Brigham Young University Author: John T. Prince
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.