Table of Contents - mspire-sequest-0.2.7 Documentation
Pages
Classes and Modules
- Mspire
- Mspire::Ident
- Mspire::Ident::Pepxml
- Mspire::Ident::Pepxml::SearchHit
- Mspire::Sequest
- Mspire::Sequest::Params
- Mspire::Sequest::Pepxml
- Mspire::Sequest::Pepxml::Modifications
- Mspire::Sequest::Sqt
- Mspire::Sequest::Sqt::Header
- Mspire::Sequest::Sqt::Locus
- Mspire::Sequest::Sqt::Match
- Mspire::Sequest::Sqt::Match::Percolator
- Mspire::Sequest::Sqt::Spectrum
- Mspire::Sequest::SqtGroup
- Mspire::Sequest::Srf
- Mspire::Sequest::Srf::Dta
- Mspire::Sequest::Srf::DtaGen
- Mspire::Sequest::Srf::Header
- Mspire::Sequest::Srf::NoSequestParamsError
- Mspire::Sequest::Srf::Out
- Mspire::Sequest::Srf::Out::Peptide
- Mspire::Sequest::Srf::Out::Protein
- Mspire::Sequest::Srf::Pepxml
- Mspire::Sequest::Srf::Search
- Mspire::Sequest::Srf::Sqt
Methods
- ::commandline — Mspire::Sequest::Srf::Pepxml
- ::commandline — Mspire::Sequest::Srf::Search
- ::commandline — Mspire::Sequest::Srf::Sqt
- ::db_info — Mspire::Sequest::Sqt
- ::db_md5sum — Mspire::Sequest::Sqt
- ::db_seq_length_and_locus_count — Mspire::Sequest::Sqt
- ::from_io — Mspire::Sequest::Srf::Header
- ::from_io — Mspire::Sequest::Srf::DtaGen
- ::from_io — Mspire::Sequest::Srf::Dta
- ::from_io — Mspire::Sequest::Srf::Out
- ::from_io — Mspire::Sequest::Srf::Out::Peptide
- ::from_line — Mspire::Sequest::Sqt::Locus
- ::get_sequest_params_and_finish_pos — Mspire::Sequest::Srf
- ::new — Mspire::Sequest::Params
- ::new — Mspire::Sequest::Pepxml::Modifications
- ::new — Mspire::Sequest::SqtGroup
- ::new — Mspire::Sequest::Sqt
- ::new — Mspire::Sequest::Sqt::Locus
- ::new — Mspire::Sequest::Srf
- ::read_extra_references — Mspire::Sequest::Srf::Out::Peptide
- ::set_deltacn — Mspire::Sequest::Sqt::Spectrum
- ::set_deltacn_from_deltacn_orig — Mspire::Sequest::Srf::Out::Peptide
- ::spectra_from_handle — Mspire::Sequest::Sqt::Spectrum
- ::update_deltacns_from_xcorr — Mspire::Sequest::Srf::Out::Peptide
- #_sys_ind_basename — Mspire::Sequest::Params
- #create_static_mods — Mspire::Sequest::Pepxml::Modifications
- #database — Mspire::Sequest::Params
- #database_path= — Mspire::Sequest::Params
- #dta_start_byte — Mspire::Sequest::Srf
- #enzyme — Mspire::Sequest::Params
- #enzyme_specificity — Mspire::Sequest::Params
- #extension — Mspire::Sequest::SqtGroup
- #filter_by_precursor_mass_tolerance! — Mspire::Sequest::Srf
- #first_entry — Mspire::Sequest::Sqt::Locus
- #first_entry — Mspire::Sequest::Srf::Out::Protein
- #fragment_ion_tol — Mspire::Sequest::Params
- #fragment_mass_type — Mspire::Sequest::Params
- #from_file — Mspire::Sequest::Sqt
- #from_file — Mspire::Sequest::Srf
- #from_handle — Mspire::Sequest::Sqt::Header
- #from_io — Mspire::Sequest::Srf::Header
- #from_io — Mspire::Sequest::Srf::DtaGen
- #from_line — Mspire::Sequest::Sqt::Spectrum
- #from_line — Mspire::Sequest::Sqt::Match
- #from_lines — Mspire::Sequest::Sqt::Header
- #get_null_padded_string — Mspire::Sequest::Srf::Header
- #grab_params — Mspire::Sequest::Params
- #id — Mspire::Sequest::Sqt::Locus
- #inspect — Mspire::Sequest::Srf::Dta
- #inspect — Mspire::Sequest::Srf::Out
- #inspect — Mspire::Sequest::Srf::Out::Peptide
- #mass_index — Mspire::Sequest::Params
- #max_num_differential_AA_per_mod — Mspire::Sequest::Params
- #max_num_internal_cleavages — Mspire::Sequest::Params
- #method_missing — Mspire::Sequest::Params
- #min_number_termini — Mspire::Sequest::Params
- #modification_info — Mspire::Sequest::Pepxml::Modifications
- #modifications — Mspire::Sequest::Pepxml::Modifications
- #negative_q_value — Mspire::Sequest::Sqt::Match::Percolator
- #negative_q_value= — Mspire::Sequest::Sqt::Match::Percolator
- #num_dta_files — Mspire::Sequest::Srf::Header
- #parse_file — Mspire::Sequest::Params
- #parse_io — Mspire::Sequest::Params
- #peptide_mass_tol — Mspire::Sequest::Params
- #percolator_score — Mspire::Sequest::Sqt::Match::Percolator
- #percolator_score= — Mspire::Sequest::Sqt::Match::Percolator
- #precursor_mass_type — Mspire::Sequest::Params
- #probability — Mspire::Sequest::Sqt::Match::Percolator
- #protein_class — Mspire::Sequest::Sqt
- #protein_class — Mspire::Sequest::Srf
- #proteins — Mspire::Sequest::Sqt::Match
- #q_value — Mspire::Sequest::Sqt::Match::Percolator
- #read_dta_and_out_interleaved — Mspire::Sequest::Srf
- #read_dta_files — Mspire::Sequest::Srf
- #read_out_files — Mspire::Sequest::Srf
- #read_scan_index — Mspire::Sequest::Srf
- #reference — Mspire::Sequest::Sqt::Locus
- #round — Mspire::Sequest::Srf::Dta
- #sample_enzyme — Mspire::Sequest::Params
- #sample_enzyme_hash — Mspire::Sequest::Params
- #search_class — Mspire::Sequest::SqtGroup
- #sequence — Mspire::Sequest::Params
- #set_hashes — Mspire::Sequest::Pepxml::Modifications
- #set_modifications — Mspire::Sequest::Pepxml::Modifications
- #static_mods — Mspire::Sequest::Params
- #to_dta — Mspire::Sequest::Srf::Search
- #to_dta_file_data — Mspire::Sequest::Srf::Dta
- #to_mgf — Mspire::Sequest::Srf::Search
- #to_pepxml — Mspire::Sequest::Srf::Pepxml
- #to_sqt — Mspire::Sequest::Srf::Sqt
- #version — Mspire::Sequest::Params
- #write_dta_file — Mspire::Sequest::Srf::Dta