Table of Contents - neurohmmer-0.1.2 Documentation
Classes and Modules
Methods
- ::add_signalp_formatting — Neurohmmer::Output
- ::add_to_path — Neurohmmer::ArgumentsValidators
- ::analyse_hmm_search_report — Neurohmmer::Hmmer
- ::analyse_output — Neurohmmer::Hmmer
- ::analyse_sequence — Neurohmmer::Signalp
- ::assert_file_present — Neurohmmer::ArgumentsValidators
- ::assert_input_file_not_empty — Neurohmmer::ArgumentsValidators
- ::assert_input_file_probably_fasta — Neurohmmer::ArgumentsValidators
- ::assert_input_sequence — Neurohmmer::ArgumentsValidators
- ::export_bin_dirs — Neurohmmer::ArgumentsValidators
- ::extract_sequence — Neurohmmer
- ::format_html_seq — Neurohmmer::Output
- ::format_seqs_for_html — Neurohmmer::Output
- ::format_signal_peptide — Neurohmmer::Output
- ::generate_hmm_models — Neurohmmer::Hmmer
- ::guess_sequence_type — Neurohmmer::ArgumentsValidators
- ::hmm_build — Neurohmmer::Hmmer
- ::hmm_search — Neurohmmer::Hmmer
- ::index — Neurohmmer
- ::index_input_file — Neurohmmer
- ::init — Neurohmmer
- ::init_input — Neurohmmer
- ::mafft — Neurohmmer::Hmmer
- ::remove_temp_dir — Neurohmmer
- ::run — Neurohmmer::ArgumentsValidators
- ::run — Neurohmmer
- ::search — Neurohmmer::Hmmer
- ::to_fasta — Neurohmmer::Output
- ::to_html — Neurohmmer::Output
- ::translate_input — Neurohmmer
- ::type_of_sequences — Neurohmmer::ArgumentsValidators