Table of Contents - neurohmmerapp-0.0.7 Documentation
Classes and Modules
- NeuroHmmerApp
- NeuroHmmerApp::BIN_DIR_NOT_FOUND
- NeuroHmmerApp::CONFIG_FILE_ERROR
- NeuroHmmerApp::Config
- NeuroHmmerApp::ENOENT
- NeuroHmmerApp::Logger
- NeuroHmmerApp::Logger::Formatter
- NeuroHmmerApp::NUM_THREADS_INCORRECT
- NeuroHmmerApp::Routes
- NeuroHmmerApp::RunNeuroHmmer
- NeuroHmmerApp::RunNeuroHmmer::ArgumentError
- NeuroHmmerApp::RunNeuroHmmer::RuntimeError
- NeuroHmmerApp::Server
Methods
- ::assert_blast_installed_and_compatible — NeuroHmmerApp
- ::assert_input_file_present — NeuroHmmerApp::RunNeuroHmmer
- ::assert_mafft_installed — NeuroHmmerApp
- ::call — NeuroHmmerApp
- ::check_host — NeuroHmmerApp
- ::check_max_characters — NeuroHmmerApp
- ::check_nps_param_present — NeuroHmmerApp::RunNeuroHmmer
- ::check_num_threads — NeuroHmmerApp
- ::check_seq_length — NeuroHmmerApp::RunNeuroHmmer
- ::check_seq_param_present — NeuroHmmerApp::RunNeuroHmmer
- ::command? — NeuroHmmerApp
- ::create_log_file — NeuroHmmerApp::RunNeuroHmmer
- ::create_run_dir — NeuroHmmerApp::RunNeuroHmmer
- ::create_unique_id — NeuroHmmerApp::RunNeuroHmmer
- ::ensure_fasta_valid — NeuroHmmerApp::RunNeuroHmmer
- ::ensure_unique_id — NeuroHmmerApp::RunNeuroHmmer
- ::ensure_unix_line_ending — NeuroHmmerApp::RunNeuroHmmer
- ::environment — NeuroHmmerApp
- ::export_bin_dir — NeuroHmmerApp
- ::init — NeuroHmmerApp
- ::init — NeuroHmmerApp::RunNeuroHmmer
- ::init_binaries — NeuroHmmerApp
- ::init_bins — NeuroHmmerApp
- ::init_dirs — NeuroHmmerApp
- ::init_public_dir — NeuroHmmerApp
- ::logger — NeuroHmmerApp
- ::new — NeuroHmmerApp::Config
- ::new — NeuroHmmerApp::CONFIG_FILE_ERROR
- ::new — NeuroHmmerApp::ENOENT
- ::new — NeuroHmmerApp::BIN_DIR_NOT_FOUND
- ::new — NeuroHmmerApp::Logger
- ::new — NeuroHmmerApp::Logger::Formatter
- ::new — NeuroHmmerApp::Server
- ::on_start — NeuroHmmerApp
- ::on_stop — NeuroHmmerApp
- ::open_in_browser — NeuroHmmerApp
- ::root — NeuroHmmerApp
- ::run — NeuroHmmerApp::Server
- ::run — NeuroHmmerApp
- ::run — NeuroHmmerApp::RunNeuroHmmer
- ::run_neurohmmer — NeuroHmmerApp::RunNeuroHmmer
- ::server_url — NeuroHmmerApp
- ::using_ssh? — NeuroHmmerApp
- ::validate_params — NeuroHmmerApp::RunNeuroHmmer
- ::verbose? — NeuroHmmerApp
- ::write_seqs_to_file — NeuroHmmerApp::RunNeuroHmmer
- ::xdg? — NeuroHmmerApp
- #[] — NeuroHmmerApp::Config
- #[]= — NeuroHmmerApp::Config
- #call — NeuroHmmerApp::Logger::Formatter
- #default_config_file — NeuroHmmerApp::Config
- #defaults — NeuroHmmerApp::Config
- #file? — NeuroHmmerApp::Config
- #include? — NeuroHmmerApp::Config
- #logdev — NeuroHmmerApp::Server
- #options — NeuroHmmerApp::Server
- #parse_config_file — NeuroHmmerApp::Config
- #setup_signal_handlers — NeuroHmmerApp::Server
- #start — NeuroHmmerApp::Server
- #stop — NeuroHmmerApp::Server
- #symbolise — NeuroHmmerApp::Config
- #to_s — NeuroHmmerApp::CONFIG_FILE_ERROR
- #to_s — NeuroHmmerApp::ENOENT
- #to_s — NeuroHmmerApp::NUM_THREADS_INCORRECT
- #write_config_file — NeuroHmmerApp::Config