module Scaffolder::GffRecordHelper
Public Instance Methods
change_position_by(distance)
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# File lib/scaffolder/gff_record_helper.rb, line 7 def change_position_by(distance) self.start += distance self.end += distance end
flip_strand()
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# File lib/scaffolder/gff_record_helper.rb, line 3 def flip_strand self.strand = (self.strand == '+' ? '-' : '+') end
overlap?(*ranges)
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# File lib/scaffolder/gff_record_helper.rb, line 20 def overlap?(*ranges) ranges.flatten.any? do |range| range.include?(self.start) || range.include?(self.end) end end
reverse_complement_by(distance)
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# File lib/scaffolder/gff_record_helper.rb, line 12 def reverse_complement_by(distance) self.end = distance - (self.end - 1) self.start = distance - (self.start - 1) self.end, self.start = self.start, self.end self.flip_strand end