class Cominer
Attributes
entropy_function[RW]
freq_table[RW]
position_table[RW]
regions[RW]
single_points[RW]
snps[RW]
Public Class Methods
new(contig)
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# File lib/scbi_cominer/cominer.rb, line 10 def initialize(contig) @freq_table = FrequencyTable.new contig.reads.each do |name,read| # puts ">#{read.name} #{read.orientation} #{read.align_clip_start} #{read.align_clip_end} #{read.start_in_consensus}" # puts read.fasta[read.align_clip_start.to_i..read.align_clip_end.to_i] # puts read.fasta @freq_table.add_read(read) end # puts freq_table.inspect # exit # @entropy_function = EntropyFunction.new(@freq_table) @regions=@entropy_function.regions @snps=@entropy_function.snps @single_points=@entropy_function.single_points @freq_table.position_table.delete('-') @position_table = @freq_table.position_table end