Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/820896-fedora-rawhide-x86_64-1541661617.531256/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lsur3ki8:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '48a0210e1d3147fa9af5625257d40464', '-D', '/var/lib/mock/820896-fedora-rawhide-x86_64-1541661617.531256/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lsur3ki8:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/libsbml-5.17.0-11.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/820896-fedora-rawhide-x86_64-1541661617.531256/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lsur3ki8:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '35c43dc9e3d64f45961119b446873ac5', '-D', '/var/lib/mock/820896-fedora-rawhide-x86_64-1541661617.531256/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lsur3ki8:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JMXtQV + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.17.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.17.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.17.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #1 (libsbml-fix_install_libpaths.patch): + echo 'Patch #1 (libsbml-fix_install_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/bindings/ruby/CMakeLists.txt patching file src/bindings/csharp/CMakeLists.txt patching file src/bindings/octave/CMakeLists.txt patching file src/bindings/perl/CMakeLists.txt Patch #3 (libsbml-5.17.0-fix_bug463.patch): + echo 'Patch #3 (libsbml-5.17.0-fix_bug463.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/sbml/Compartment.cpp Patch #2 (libsbml-5.17.0-swigdoc_fix.patch): + echo 'Patch #2 (libsbml-5.17.0-swigdoc_fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/bindings/swig/swigdoc.py Hunk #3 succeeded at 458 (offset -1 lines). Hunk #4 succeeded at 814 (offset -1 lines). Hunk #5 succeeded at 955 (offset -1 lines). Hunk #6 succeeded at 1576 (offset -1 lines). Hunk #7 succeeded at 1847 (offset -1 lines). Hunk #8 succeeded at 1908 (offset -1 lines). Hunk #9 succeeded at 1930 (offset -1 lines). + unzip -n /builddir/build/SOURCES/libSBML-5.17.0-render-src.zip Archive: /builddir/build/SOURCES/libSBML-5.17.0-render-src.zip + iconv -f latin1 -t utf8 NEWS.txt + touch -r NEWS.txt t + mv t NEWS.txt BUILDSTDERR: ++ find docs/src/filters -type f '(' -name '*.py' ')' + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-csharp.py + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-c.py + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-python.py + xargs rm + grep -e 'This file was automatically generated by SWIG' -r . -l + mkdir build-docs BUILDSTDERR: ++ /bin/ls -1 BUILDSTDERR: ++ grep -v build-docs + cp -a AUTHORS.txt CMakeLists.txt COPYING.html COPYING.txt FUNDING.txt LICENSE.html LICENSE.txt Makefile.in NEWS.txt OLD_NEWS.txt README-extension.txt README.txt VERSION.txt VERSION_PACKAGES.ac acinclude.m4 aclocal.m4 cmake_uninstall.cmake.in common.cmake comp-package.cmake config configure configure.ac docs examples fbc-package.cmake groups-package.cmake layout-package.cmake libsbml.spec.in macosx multi-package.cmake qual-package.cmake render-package.cmake src build-docs/ + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7b6yYd + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + mkdir -p build2 build + pushd build2 ~/build/BUILD/libSBML-5.17.0-Source/build2 ~/build/BUILD/libSBML-5.17.0-Source + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + pushd ../build ~/build/BUILD/libSBML-5.17.0-Source/build ~/build/BUILD/libSBML-5.17.0-Source/build2 ~/build/BUILD/libSBML-5.17.0-Source + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.7m -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.7m.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_JAVA:BOOL=ON -DWITH_JAVASCRIPT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CSHARP:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_LIBXML:BOOL=ON -DWITH_EXPAT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.7.1") -- Found JNI: /usr/lib/jvm/jre/lib/amd64/libjawt.so -- Found Java: /usr/bin/java (found version "1.8.0.191") found components: Development -- Found Perl: /usr/bin/perl (found version "5.28.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.28.0") -- Found PythonLibs: /usr/lib64/libpython3.7m.so (found version "3.7.1") -- Found Ruby: /usr/bin/ruby (found version "2.5.3") -- ---------------------------------------------------------------------- libSBML version 5.17.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host '35c43dc9e3d64f45961119b446873ac5' host type = Linux host operating system = Linux 4.16.13-300.fc28.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 3.0.12) -- Using C# = /usr/bin/mcs -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = /usr/bin/ruby -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- Use Legacy Math = no -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CMAKE_SKIP_INSTALL_RPATH BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.17.0-Source/build + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.17.0-Source -B/builddir/build/BUILD/libSBML-5.17.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:396:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:537:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:396:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:537:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:367:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:441:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:367:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:441:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Port.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:829:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1094:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1274:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1481:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:829:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1094:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1274:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1481:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:939:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:976:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1013:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1109:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1117:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1125:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1133:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:939:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:976:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1013:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1109:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1117:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1125:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1133:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:122, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1174:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:122, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1174:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1096:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1192:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1096:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1192:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1094:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1190:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1094:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1190:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:923:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:923:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1489:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1489:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp:461:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Group.cpp:461:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:476:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:476:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.17.0-Smake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: ource/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:138, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:138, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:830:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1012:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:830:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1012:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1063:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1120:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1063:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1120:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1236:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1236:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1329:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1329:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1762:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1762:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:441:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:704:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:441:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:704:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:50: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h: In copy constructor 'ColorDefinition::ColorDefinition(const ColorDefinition&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:95:15: warning: 'ColorDefinition::mValue' will be initialized after [-Wreorder] BUILDSTDERR: std::string mValue; BUILDSTDERR: ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:90:17: warning: 'unsigned char ColorDefinition::mRed' [-Wreorder] BUILDSTDERR: unsigned char mRed; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:272:1: warning: when initialized here [-Wreorder] BUILDSTDERR: ColorDefinition::ColorDefinition(const ColorDefinition& orig) BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:50: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h: In copy constructor 'ColorDefinition::ColorDefinition(const ColorDefinition&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:95:15: warning: 'ColorDefinition::mValue' will be initialized after [-Wreorder] BUILDSTDERR: std::string mValue; BUILDSTDERR: ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:90:17: warning: 'unsigned char ColorDefinition::mRed' [-Wreorder] BUILDSTDERR: unsigned char mRed; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:272:1: warning: when initialized here [-Wreorder] BUILDSTDERR: ColorDefinition::ColorDefinition(const ColorDefinition& orig) BUILDSTDERR: ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:360:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual void GlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:837:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual void GlobalStyle::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:218:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:360:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual void GlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:837:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual void GlobalStyle::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:218:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:561:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* GradientBase::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1251:22: warning: unused variable 'name' [-Wunused-variable] BUILDSTDERR: const std::string& name = stream.peek().getName(); BUILDSTDERR: ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:561:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* GradientBase::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1251:22: warning: unused variable 'name' [-Wunused-variable] BUILDSTDERR: const std::string& name = stream.peek().getName(); BUILDSTDERR: ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'virtual void GraphicalPrimitive1D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1158:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log && log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h: In constructor 'GraphicalPrimitive2D::GraphicalPrimitive2D(RenderPkgNamespaces*, const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:92:7: warning: 'GraphicalPrimitive2D::mFillRule' will be initialized after [-Wreorder] BUILDSTDERR: int mFillRule; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:91:15: warning: 'std::__cxx11::string GraphicalPrimitive2D::mFill' [-Wreorder] BUILDSTDERR: std::string mFill; BUILDSTDERR: ^~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:135:1: warning: when initialized here [-Wreorder] BUILDSTDERR: GraphicalPrimitive2D::GraphicalPrimitive2D(RenderPkgNamespaces* renderns, const std::string& id) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'virtual void GraphicalPrimitive1D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1158:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log && log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h: In constructor 'GraphicalPrimitive2D::GraphicalPrimitive2D(RenderPkgNamespaces*, const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:92:7: warning: 'GraphicalPrimitive2D::mFillRule' will be initialized after [-Wreorder] BUILDSTDERR: int mFillRule; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:91:15: warning: 'std::__cxx11::string GraphicalPrimitive2D::mFill' [-Wreorder] BUILDSTDERR: std::string mFill; BUILDSTDERR: ^~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:135:1: warning: when initialized here [-Wreorder] BUILDSTDERR: GraphicalPrimitive2D::GraphicalPrimitive2D(RenderPkgNamespaces* renderns, const std::string& id) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h: In constructor 'LineEnding::LineEnding(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:88:16: warning: 'LineEnding::mBoundingBox' will be initialized after [-Wreorder] BUILDSTDERR: BoundingBox* mBoundingBox; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:87:16: warning: 'RenderGroup* LineEnding::mGroup' [-Wreorder] BUILDSTDERR: RenderGroup* mGroup; BUILDSTDERR: ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:107:1: warning: when initialized here [-Wreorder] BUILDSTDERR: LineEnding::LineEnding(const XMLNode& node, unsigned int l2version) BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:524:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:550:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1304:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1306:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual void LineEnding::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1478:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log && log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h: In constructor 'LineEnding::LineEnding(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:88:16: warning: 'LineEnding::mBoundingBox' will be initialized after [-Wreorder] BUILDSTDERR: BoundingBox* mBoundingBox; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:87:16: warning: 'RenderGroup* LineEnding::mGroup' [-Wreorder] BUILDSTDERR: RenderGroup* mGroup; BUILDSTDERR: ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:107:1: warning: when initialized here [-Wreorder] BUILDSTDERR: LineEnding::LineEnding(const XMLNode& node, unsigned int l2version) BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:524:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:550:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1304:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1306:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual void LineEnding::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1478:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log && log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:319:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:406:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:256:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:284:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:312:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:340:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:368:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:396:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:424:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: .17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:452:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:512:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:319:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:406:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:420:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:600:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:835:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:892:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:959:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:256:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:284:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:312:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:340:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:368:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:396:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:424:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:452:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:512:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:278:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:343:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:420:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:600:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:835:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:892:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:959:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:278:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:343:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:75, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:359:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:75, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:359:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:417:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:581:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:785:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:842:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:908:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:359:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:417:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:581:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:785:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:842:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:908:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (log->getNumErrors() == numErrs + 1 && BUILDSTDERR: ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:358:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual void LocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:830:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:359:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual void LocalStyle::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:321:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:358:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual void LocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:830:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:115:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:416:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:444:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'virtual void Polygon::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:829:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual void LocalStyle::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:321:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:115:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:416:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:444:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'virtual void Polygon::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:829:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:40, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:468:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:496:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:40, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:468:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:496:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In constructor 'RenderGroup::RenderGroup(unsigned int, unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:76:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(unsigned int level, BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:76:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(unsigned int level, BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In constructor 'RenderGroup::RenderGroup(RenderPkgNamespaces*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:99:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(RenderPkgNamespaces *renderns) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:99:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(RenderPkgNamespaces *renderns) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In copy constructor 'RenderGroup::RenderGroup(const RenderGroup&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:260:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(const RenderGroup& orig) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:260:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(const RenderGroup& orig) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:67, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1109:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1137:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ /builddmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: ir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1165:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1193:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1221:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1249:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1277:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1305:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2622:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In constructor 'RenderGroup::RenderGroup(unsigned int, unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:76:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(unsigned int level, BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:76:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(unsigned int level, BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In constructor 'RenderGroup::RenderGroup(RenderPkgNamespaces*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:99:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(RenderPkgNamespaces *renderns) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:99:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(RenderPkgNamespaces *renderns) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h: In copy constructor 'RenderGroup::RenderGroup(const RenderGroup&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:88:15: warning: 'RenderGroup::mEndHead' will be initialized after [-Wreorder] BUILDSTDERR: std::string mEndHead; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:81:15: warning: 'std::__cxx11::string RenderGroup::mFontFamily' [-Wreorder] BUILDSTDERR: std::string mFontFamily; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:260:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(const RenderGroup& orig) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:86:7: warning: 'RenderGroup::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:82:16: warning: 'RelAbsVector RenderGroup::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:260:1: warning: when initialized here [-Wreorder] BUILDSTDERR: RenderGroup::RenderGroup(const RenderGroup& orig) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:62, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:67, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1109:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1137:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ /builddmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: ir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1165:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1193:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1221:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1249:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1277:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1305:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2622:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:729:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:891:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:919:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1081:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:729:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:891:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:919:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1081:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:588:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:1260:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:588:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension/RenderExtension.h:57:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Style.cpp:1260:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h: In copy constructor 'Text::Text(const Text&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:116:7: warning: 'Text::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:112:16: warning: 'RelAbsVector Text::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp:198:1: warning: when initialized here [-Wreorder] BUILDSTDERR: Text::Text(const Text& orig) BUILDSTDERR: ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:500:1: warning: "/*" within comment [-Wcomment] BUILDSTDERR: /* BUILDSTDERR: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In member function 'virtual void Transformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:798:16: warning: unused variable 'pkgVersion' [-Wunused-variable] BUILDSTDERR: unsigned int pkgVersion = getPackageVersion(); BUILDSTDERR: ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h: In copy constructor 'Text::Text(const Text&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:116:7: warning: 'Text::mVTextAnchor' will be initialized after [-Wreorder] BUILDSTDERR: int mVTextAnchor; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:112:16: warning: 'RelAbsVector Text::mFontSize' [-Wreorder] BUILDSTDERR: RelAbsVector mFontSize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.cpp:198:1: warning: when initialized here [-Wreorder] BUILDSTDERR: Text::Text(const Text& orig) BUILDSTDERR: ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp: In member function 'virtual void Transformation2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp:714:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:500:1: warning: "/*" within comment [-Wcomment] BUILDSTDERR: /* BUILDSTDERR: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In member function 'virtual void Transformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:798:16: warning: unused variable 'pkgVersion' [-Wunused-variable] BUILDSTDERR: unsigned int pkgVersion = getPackageVersion(); BUILDSTDERR: ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp: In member function 'virtual void Transformation2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp:714:8: warning: unused variable 'assigned' [-Wunused-variable] BUILDSTDERR: bool assigned = false; BUILDSTDERR: ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, from /builddir/build/BUILD/libSBML-5.17.0-Source/smake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: rc/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, from /builddir/build/BUILD/libSBML-5.17.0-Source/smake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: rc/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/RegisterConverters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLIdConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:350:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:350:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp:2101:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp:2117:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp:2101:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Compartment.cpp:2117:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp:2370:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp:2386:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp:2370:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Event.cpp:2386:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp:2079:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/KineticLaw.cpp:2079:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp:7406:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp:7422:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp:7406:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Model.cpp:7422:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp:1990:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp:2006:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp:1990:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Parameter.cpp:2006:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp:2675:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp:2691:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp:2675:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Reaction.cpp:2691:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2252:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2268:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2284:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2252:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2268:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLDocument.cpp:2284:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLTypeCodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBMLWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp:5895:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] BUILDSTDERR: unsigned int pkgCoreVersion = getPackageCoreVersion(); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SBase.cpp:5895:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] BUILDSTDERR: unsigned int pkgCoreVersion = getPackageCoreVersion(); BUILDSTDERR: ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp:2420:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp:2436:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints 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Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp:2420:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/UnitDefinition.cpp:2436:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/UnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/UnitKindList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/UnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/IdList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/IdentifierTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/List.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/List.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/MetaIdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/PrefixTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building C object src/CMakeFiles/sbml.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/ConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/SBMLExternalValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/SBMLValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/constraints/ValidCnUnitsValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbol.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbol.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTCSymbol.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTBinaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTBinaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTBinaryFunctionNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTCSymbolAvogadroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTPiecewiseFunctionNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNumber.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTNumber.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTNumber.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTQualifierNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/FormulaTokenizer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 64%] Building C object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/L3FormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/OutputCompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/zip.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zip.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/zip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/InputDecompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/unzip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/ioapi_mem.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/OutputCompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/zip.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/zip.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/zip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/unzip.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/unzip.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/unzip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/ioapi_mem.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLToken.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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/usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Swig Java source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="libsbmlcs" -P /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/swig-binding.cmake make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: Swig: Java Bindings make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target binding_java_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.17.0-Source --master /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTBase.h:127: Warning 509: Overloaded method ASTBase::setType(int) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/ASTBase.h:125: Warning 509: as it is shadowed by ASTBase::setType(ASTNodeType_t). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:327: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:311: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.h:378: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/GradientBase.h:362: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:440: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:436: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:478: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:473: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:514: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:509: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:551: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/Text.h:546: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:528: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:524: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:566: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:561: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:603: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:598: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:675: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:635: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:678: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:639: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:906: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:891: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1138: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1122: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1258: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1242: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1306: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1290: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1354: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1338: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1402: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1386: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_ruby_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/libsbml.i BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/render-package.i:98: Warning 801: Wrong class name (corrected to `Double_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/render-package.i:98: Warning 801: Wrong class name (corrected to `Double_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/render-package.i:99: Warning 801: Wrong class name (corrected to `Int_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/render-package.i:99: Warning 801: Wrong class name (corrected to `Int_array') make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Swig: R Bindings cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a R keyword, renaming to '_next' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_extensions make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target test_comp_extensions make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_sbase make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_fbc make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Swig Python source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.17.0-Source --master /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.17.0-Source/src > /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../../../docs/src/common-graphics cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python" -DVERSION="5.17.0" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:121: DeprecationWarning: the formatter module is deprecated BUILDSTDERR: from formatter import NullWriter, AbstractFormatter BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' BUILDSTDERR: Python: Add Version to generated file make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_fbc_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 73%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Built target test_fbc_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= Scanning dependencies of target test_extension_package_groups make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_groups_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_layout_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_layout make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Built target test_layout_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_multi make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_multi_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_extension_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_extension_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_qual_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_render_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/test_render_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common 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src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestValidation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestCVTerms.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestDate_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestModelHistory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestModelHistory_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_extension make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_math make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestGetValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestNewWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadFromFile1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:1529:13: warning: 'void test_element_implies(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_implies) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:1510:13: warning: 'void test_element_rem(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_rem) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:1491:13: warning: 'void test_element_quotient(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_quotient) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:1472:13: warning: 'void test_element_min(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_min) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestReadMathML.cpp:1453:13: warning: 'void test_element_max(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_max) BUILDSTDERR: ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestValidASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestWriteMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:76: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp: In function 'void test_RenderWriting_write_model_1(int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:137:13: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without BUILDSTDERR: START_TEST (test_RenderWriting_write_model_1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestFormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestFormulaParser.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestFormulaTokenizer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test/TestL3FormulaParserC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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[ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestGetMultipleObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 87%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 88%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile7.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 88%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestList.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 88%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestMemory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestStack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestStringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test/TestUtil.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile8.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile9.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_xml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 90%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 90%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLExceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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-DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRemoveFromParent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common 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Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRequiredAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRequiredElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLParentObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLTransforms.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLTransforms.cpp:41: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLTransforms.cpp:787:12: warning: 'void test_SBMLTransforms_replaceIAWithFD(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST(test_SBMLTransforms_replaceIAWithFD) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLValidators.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBaseIdName.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBase_newSetters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestWriteL3SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestWriteSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestAlgebraicRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 92%] Swig C# source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="libsbmlcs" -P /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/swig-binding.cmake BUILDSTDERR: Swig: C# Bindings BUILDSTDERR: Creating /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/csharp-files make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestAssignmentRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_native_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCompartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCompartmentType.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCompartmentType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCompartmentVolumeRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestCompartment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestConstraint.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestConstraint_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestDelay.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestEvent.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestEventAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestEventAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestEvent_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestFunctionDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestInitialAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestKineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestKineticLaw_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Compartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Event.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Parameter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Reaction.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Species.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3SpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 93%] Building CXX object src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_csharp_native_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp/../swig -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Trigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestL3Unit.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestListOf.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Linking CXX shared library libsbmlcs.so cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_csharp_native_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libsbmlcs.so -o libsbmlcs.so CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Built target binding_csharp_native_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestModel.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_managed_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestModel_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestModifierSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestParameter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestParameterRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestParameter_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestPriority.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRateRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Build csharp files cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCSHARP_EXTRA_ARGS="" -DCSHARP_COMPILER="/usr/bin/mcs" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp/compile-native-files.cmake make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: Creating: libsbmlcsP.dll BUILDSTDERR: Creating: TestRunner.exe BUILDSTDERR: Creating: TestRW.exe make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Built target binding_csharp_managed_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReaction.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReaction_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile1.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile2.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile3.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestReadFromFile4.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestRule_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLConvert.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSBMLDocument.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpecies.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpeciesType.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpeciesType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSpecies_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestStoichiometryMath.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestTrigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestUnit.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/TestUnitDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-DJava_JAVAC_EXECUTABLE="/usr/bin/javac" -DJava_JAR_EXECUTABLE="/usr/bin/jar" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java" -DFILE_SEP=":" -DPATH_SEP=/ -DCOMPATIBILIY=1.6 -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java/compile-native-files.cmake added manifest adding: org/sbml/libsbml/ASTBase.class(in = 12613) (out= 3664)(deflated 70%) adding: org/sbml/libsbml/ASTBasePlugin.class(in = 10538) (out= 3052)(deflated 71%) adding: org/sbml/libsbml/ASTNode.class(in = 16109) (out= 4850)(deflated 69%) adding: org/sbml/libsbml/ASTNodeList.class(in = 1591) (out= 759)(deflated 52%) adding: org/sbml/libsbml/AlgebraicRule.class(in = 1833) (out= 891)(deflated 51%) adding: org/sbml/libsbml/AssignmentRule.class(in = 2073) (out= 964)(deflated 53%) adding: org/sbml/libsbml/Association.class(in = 5587) (out= 1901)(deflated 65%) adding: 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org/sbml/libsbml/FunctionDefinition.class(in = 4850) (out= 1642)(deflated 66%) adding: org/sbml/libsbml/FunctionTerm.class(in = 4233) (out= 1567)(deflated 62%) adding: org/sbml/libsbml/GeneAssociation.class(in = 4684) (out= 1628)(deflated 65%) adding: org/sbml/libsbml/GeneProduct.class(in = 4633) (out= 1639)(deflated 64%) adding: org/sbml/libsbml/GeneProductAssociation.class(in = 6209) (out= 1975)(deflated 68%) adding: org/sbml/libsbml/GeneProductRef.class(in = 4689) (out= 1625)(deflated 65%) adding: org/sbml/libsbml/GeneralGlyph.class(in = 8733) (out= 2710)(deflated 68%) adding: org/sbml/libsbml/GlobalRenderInformation.class(in = 6846) (out= 2091)(deflated 69%) adding: org/sbml/libsbml/GlobalStyle.class(in = 3024) (out= 1209)(deflated 60%) adding: org/sbml/libsbml/GradientBase.class(in = 6242) (out= 2070)(deflated 66%) adding: org/sbml/libsbml/GradientStop.class(in = 4471) (out= 1631)(deflated 63%) adding: org/sbml/libsbml/GraphicalObject.class(in = 6884) (out= 2188)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive1D.class(in = 6101) (out= 1945)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive2D.class(in = 4299) (out= 1482)(deflated 65%) adding: org/sbml/libsbml/Group.class(in = 6023) (out= 2131)(deflated 64%) adding: org/sbml/libsbml/GroupsExtension.class(in = 4897) (out= 1971)(deflated 59%) adding: org/sbml/libsbml/GroupsModelPlugin.class(in = 4640) (out= 1615)(deflated 65%) adding: org/sbml/libsbml/GroupsPkgNamespaces.class(in = 2439) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/ISBMLExtensionNamespaces.class(in = 1574) (out= 727)(deflated 53%) adding: org/sbml/libsbml/IdList.class(in = 1894) (out= 873)(deflated 53%) adding: org/sbml/libsbml/IdentifierTransformer.class(in = 1830) (out= 866)(deflated 52%) adding: org/sbml/libsbml/Image.class(in = 7038) (out= 2337)(deflated 66%) adding: org/sbml/libsbml/InSpeciesTypeBond.class(in = 4909) (out= 1642)(deflated 66%) adding: org/sbml/libsbml/InitialAssignment.class(in = 4899) (out= 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org/sbml/libsbml/ListOfLocalRenderInformation.class(in = 8521) (out= 2403)(deflated 71%) adding: org/sbml/libsbml/ListOfLocalStyles.class(in = 4545) (out= 1590)(deflated 65%) adding: org/sbml/libsbml/ListOfMembers.class(in = 5114) (out= 1763)(deflated 65%) adding: org/sbml/libsbml/ListOfModelDefinitions.class(in = 3309) (out= 1227)(deflated 62%) adding: org/sbml/libsbml/ListOfMultiSpeciesTypes.class(in = 3543) (out= 1295)(deflated 63%) adding: org/sbml/libsbml/ListOfObjectives.class(in = 5192) (out= 1717)(deflated 66%) adding: org/sbml/libsbml/ListOfOutputs.class(in = 3373) (out= 1296)(deflated 61%) adding: org/sbml/libsbml/ListOfOutwardBindingSites.class(in = 3650) (out= 1301)(deflated 64%) adding: org/sbml/libsbml/ListOfParameters.class(in = 2954) (out= 1166)(deflated 60%) adding: org/sbml/libsbml/ListOfPorts.class(in = 3278) (out= 1299)(deflated 60%) adding: org/sbml/libsbml/ListOfPossibleSpeciesFeatureValues.class(in = 3893) (out= 1313)(deflated 66%) adding: org/sbml/libsbml/ListOfQualitativeSpecies.class(in = 3361) (out= 1236)(deflated 63%) adding: org/sbml/libsbml/ListOfReactionGlyphs.class(in = 3581) (out= 1337)(deflated 62%) adding: org/sbml/libsbml/ListOfReactions.class(in = 2878) (out= 1153)(deflated 59%) adding: org/sbml/libsbml/ListOfReferenceGlyphs.class(in = 3608) (out= 1342)(deflated 62%) adding: org/sbml/libsbml/ListOfReplacedElements.class(in = 2905) (out= 1164)(deflated 59%) adding: org/sbml/libsbml/ListOfRules.class(in = 2943) (out= 1190)(deflated 59%) adding: org/sbml/libsbml/ListOfSpecies.class(in = 2888) (out= 1165)(deflated 59%) adding: org/sbml/libsbml/ListOfSpeciesFeatureTypes.class(in = 3650) (out= 1297)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatureValues.class(in = 3677) (out= 1300)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatures.class(in = 5453) (out= 1695)(deflated 68%) adding: org/sbml/libsbml/ListOfSpeciesGlyphs.class(in = 3554) (out= 1333)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesReferenceGlyphs.class(in = 3797) (out= 1352)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesReferences.class(in = 3187) (out= 1202)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentIndexes.class(in = 3705) (out= 1275)(deflated 65%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentMapInProducts.class(in = 4028) (out= 1317)(deflated 67%) adding: org/sbml/libsbml/ListOfSpeciesTypeInstances.class(in = 3677) (out= 1298)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesTypes.class(in = 3000) (out= 1167)(deflated 61%) adding: org/sbml/libsbml/ListOfSubmodels.class(in = 3134) (out= 1224)(deflated 60%) adding: org/sbml/libsbml/ListOfTextGlyphs.class(in = 3473) (out= 1335)(deflated 61%) adding: org/sbml/libsbml/ListOfTransitions.class(in = 3327) (out= 1255)(deflated 62%) adding: org/sbml/libsbml/ListOfUnitDefinitions.class(in = 3323) (out= 1246)(deflated 62%) adding: org/sbml/libsbml/ListOfUnits.class(in = 2479) (out= 1087)(deflated 56%) adding: org/sbml/libsbml/LocalParameter.class(in = 3273) (out= 1250)(deflated 61%) adding: org/sbml/libsbml/LocalRenderInformation.class(in = 6927) (out= 2109)(deflated 69%) adding: org/sbml/libsbml/LocalStyle.class(in = 4169) (out= 1561)(deflated 62%) adding: org/sbml/libsbml/MathFilter.class(in = 1180) (out= 660)(deflated 44%) adding: org/sbml/libsbml/MathML.class(in = 1286) (out= 694)(deflated 46%) adding: org/sbml/libsbml/Member.class(in = 4572) (out= 1689)(deflated 63%) adding: org/sbml/libsbml/Model.class(in = 35601) (out= 9229)(deflated 74%) adding: org/sbml/libsbml/ModelCreator.class(in = 5096) (out= 1716)(deflated 66%) adding: org/sbml/libsbml/ModelCreatorList.class(in = 1681) (out= 762)(deflated 54%) adding: org/sbml/libsbml/ModelDefinition.class(in = 2707) (out= 1111)(deflated 58%) adding: org/sbml/libsbml/ModelHistory.class(in = 4260) (out= 1534)(deflated 63%) adding: org/sbml/libsbml/ModifierSpeciesReference.class(in = 2183) (out= 967)(deflated 55%) adding: org/sbml/libsbml/MultiASTPlugin.class(in = 5653) (out= 1792)(deflated 68%) adding: org/sbml/libsbml/MultiCompartmentPlugin.class(in = 5989) (out= 1814)(deflated 69%) adding: org/sbml/libsbml/MultiExtension.class(in = 7320) (out= 2847)(deflated 61%) adding: org/sbml/libsbml/MultiListOfReactionsPlugin.class(in = 2446) (out= 1015)(deflated 58%) adding: org/sbml/libsbml/MultiModelPlugin.class(in = 4882) (out= 1632)(deflated 66%) adding: org/sbml/libsbml/MultiPkgNamespaces.class(in = 2421) (out= 1052)(deflated 56%) adding: org/sbml/libsbml/MultiSBMLDocumentPlugin.class(in = 1994) (out= 909)(deflated 54%) adding: org/sbml/libsbml/MultiSimpleSpeciesReferencePlugin.class(in = 3873) (out= 1286)(deflated 66%) adding: org/sbml/libsbml/MultiSpeciesPlugin.class(in = 8318) (out= 2323)(deflated 72%) adding: org/sbml/libsbml/MultiSpeciesReferencePlugin.class(in = 5222) (out= 1584)(deflated 69%) adding: org/sbml/libsbml/MultiSpeciesType.class(in = 11919) (out= 3139)(deflated 73%) adding: org/sbml/libsbml/OFStream.class(in = 1741) (out= 830)(deflated 52%) adding: org/sbml/libsbml/OStream.class(in = 1457) (out= 799)(deflated 45%) adding: org/sbml/libsbml/OStringStream.class(in = 1283) (out= 682)(deflated 46%) adding: org/sbml/libsbml/Objective.class(in = 6124) (out= 2051)(deflated 66%) adding: org/sbml/libsbml/Output.class(in = 4964) (out= 1748)(deflated 64%) adding: org/sbml/libsbml/OutwardBindingSite.class(in = 5099) (out= 1684)(deflated 66%) adding: org/sbml/libsbml/Parameter.class(in = 4878) (out= 1744)(deflated 64%) adding: org/sbml/libsbml/Point.class(in = 5465) (out= 1969)(deflated 63%) adding: org/sbml/libsbml/Polygon.class(in = 5278) (out= 1921)(deflated 63%) adding: org/sbml/libsbml/Port.class(in = 3665) (out= 1459)(deflated 60%) adding: org/sbml/libsbml/PossibleSpeciesFeatureValue.class(in = 4836) (out= 1575)(deflated 67%) adding: org/sbml/libsbml/Priority.class(in = 3365) (out= 1353)(deflated 59%) adding: org/sbml/libsbml/QualExtension.class(in = 5334) (out= 2188)(deflated 58%) adding: org/sbml/libsbml/QualModelPlugin.class(in = 6593) (out= 2037)(deflated 69%) adding: org/sbml/libsbml/QualPkgNamespaces.class(in = 2403) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/QualitativeSpecies.class(in = 5893) (out= 1861)(deflated 68%) adding: org/sbml/libsbml/RDFAnnotationParser.class(in = 5017) (out= 1521)(deflated 69%) adding: org/sbml/libsbml/RadialGradient.class(in = 8933) (out= 2426)(deflated 72%) adding: org/sbml/libsbml/RateRule.class(in = 1989) (out= 958)(deflated 51%) adding: org/sbml/libsbml/Reaction.class(in = 11763) (out= 3312)(deflated 71%) adding: org/sbml/libsbml/ReactionGlyph.class(in = 7761) (out= 2463)(deflated 68%) adding: org/sbml/libsbml/Rectangle.class(in = 9619) (out= 2670)(deflated 72%) adding: org/sbml/libsbml/ReferenceGlyph.class(in = 6368) (out= 2143)(deflated 66%) adding: org/sbml/libsbml/RelAbsVector.class(in = 3786) (out= 1332)(deflated 64%) adding: org/sbml/libsbml/RenderCubicBezier.class(in = 9618) (out= 2415)(deflated 74%) adding: org/sbml/libsbml/RenderCurve.class(in = 6765) (out= 2283)(deflated 66%) adding: org/sbml/libsbml/RenderExtension.class(in = 7959) (out= 3059)(deflated 61%) adding: org/sbml/libsbml/RenderGraphicalObjectPlugin.class(in = 3417) (out= 1199)(deflated 64%) adding: org/sbml/libsbml/RenderGroup.class(in = 12819) (out= 3681)(deflated 71%) adding: org/sbml/libsbml/RenderInformationBase.class(in = 12839) (out= 3328)(deflated 74%) adding: org/sbml/libsbml/RenderLayoutPlugin.class(in = 5038) (out= 1621)(deflated 67%) adding: org/sbml/libsbml/RenderListOfLayoutsPlugin.class(in = 4953) (out= 1557)(deflated 68%) adding: org/sbml/libsbml/RenderPkgNamespaces.class(in = 2439) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/RenderPoint.class(in = 6931) (out= 2130)(deflated 69%) adding: org/sbml/libsbml/ReplacedBy.class(in = 2711) (out= 1154)(deflated 57%) adding: org/sbml/libsbml/ReplacedElement.class(in = 4136) (out= 1484)(deflated 64%) adding: org/sbml/libsbml/Replacing.class(in = 2454) (out= 1018)(deflated 58%) adding: org/sbml/libsbml/Rule.class(in = 5603) (out= 2032)(deflated 63%) adding: org/sbml/libsbml/SBMLConstructorException.class(in = 1861) (out= 836)(deflated 55%) adding: org/sbml/libsbml/SBMLConverter.class(in = 4793) (out= 1649)(deflated 65%) adding: org/sbml/libsbml/SBMLConverterRegistry.class(in = 2188) (out= 889)(deflated 59%) adding: org/sbml/libsbml/SBMLDocument.class(in = 13286) (out= 3833)(deflated 71%) adding: org/sbml/libsbml/SBMLDocumentPlugin.class(in = 2433) (out= 1028)(deflated 57%) adding: org/sbml/libsbml/SBMLError.class(in = 2561) (out= 1017)(deflated 60%) adding: org/sbml/libsbml/SBMLErrorLog.class(in = 6193) (out= 1879)(deflated 69%) adding: org/sbml/libsbml/SBMLExtension.class(in = 5506) (out= 1826)(deflated 66%) adding: org/sbml/libsbml/SBMLExtensionException.class(in = 982) (out= 580)(deflated 40%) adding: org/sbml/libsbml/SBMLExtensionRegistry.class(in = 4294) (out= 1474)(deflated 65%) adding: org/sbml/libsbml/SBMLExternalValidator.class(in = 2954) (out= 1111)(deflated 62%) adding: org/sbml/libsbml/SBMLFileResolver.class(in = 2733) (out= 1076)(deflated 60%) adding: org/sbml/libsbml/SBMLFunctionDefinitionConverter.class(in = 2336) (out= 952)(deflated 59%) adding: org/sbml/libsbml/SBMLIdConverter.class(in = 2080) (out= 937)(deflated 54%) adding: org/sbml/libsbml/SBMLInferUnitsConverter.class(in = 2208) (out= 948)(deflated 57%) adding: org/sbml/libsbml/SBMLInitialAssignmentConverter.class(in = 2320) (out= 957)(deflated 58%) adding: org/sbml/libsbml/SBMLLevel1Version1Converter.class(in = 2272) (out= 953)(deflated 58%) adding: org/sbml/libsbml/SBMLLevelVersionConverter.class(in = 2779) (out= 1078)(deflated 61%) adding: org/sbml/libsbml/SBMLLocalParameterConverter.class(in = 2272) (out= 953)(deflated 58%) adding: org/sbml/libsbml/SBMLNamespaces.class(in = 5740) (out= 1964)(deflated 65%) adding: org/sbml/libsbml/SBMLNamespacesList.class(in = 1717) (out= 767)(deflated 55%) adding: org/sbml/libsbml/SBMLReactionConverter.class(in = 2486) (out= 1012)(deflated 59%) adding: org/sbml/libsbml/SBMLReader.class(in = 1939) (out= 959)(deflated 50%) adding: org/sbml/libsbml/SBMLResolver.class(in = 3186) (out= 1232)(deflated 61%) adding: org/sbml/libsbml/SBMLResolverRegistry.class(in = 3368) (out= 1204)(deflated 64%) adding: org/sbml/libsbml/SBMLRuleConverter.class(in = 2112) (out= 941)(deflated 55%) adding: org/sbml/libsbml/SBMLStripPackageConverter.class(in = 2660) (out= 1051)(deflated 60%) adding: org/sbml/libsbml/SBMLTransforms.class(in = 3702) (out= 1250)(deflated 66%) adding: org/sbml/libsbml/SBMLUnitsConverter.class(in = 2128) (out= 942)(deflated 55%) adding: org/sbml/libsbml/SBMLUri.class(in = 1947) (out= 909)(deflated 53%) adding: org/sbml/libsbml/SBMLValidator.class(in = 4430) (out= 1640)(deflated 62%) adding: org/sbml/libsbml/SBMLWriter.class(in = 2909) (out= 1195)(deflated 58%) adding: org/sbml/libsbml/SBO.class(in = 4172) (out= 1566)(deflated 62%) adding: org/sbml/libsbml/SBase.class(in = 19402) (out= 5521)(deflated 71%) adding: org/sbml/libsbml/SBaseExtensionPoint.class(in = 2363) (out= 959)(deflated 59%) adding: org/sbml/libsbml/SBaseList.class(in = 1555) (out= 755)(deflated 51%) adding: org/sbml/libsbml/SBasePlugin.class(in = 7122) (out= 2337)(deflated 67%) adding: org/sbml/libsbml/SBaseRef.class(in = 6427) (out= 2158)(deflated 66%) adding: org/sbml/libsbml/SWIGTYPE_p_ASTFunction.class(in = 480) (out= 316)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_ExpectedAttributes.class(in = 501) (out= 320)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_FormulaUnitsData.class(in = 495) (out= 318)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_List.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_PrefixTransformer.class(in = 498) (out= 319)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_StringBuffer_t.class(in = 489) (out= 317)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_double.class(in = 465) (out= 309)(deflated 33%) adding: org/sbml/libsbml/SWIGTYPE_p_f_p_Model_p_SBMLErrorLog_p_void__int.class(in = 555) (out= 332)(deflated 40%) adding: org/sbml/libsbml/SWIGTYPE_p_int.class(in = 456) (out= 307)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntry.class(in = 513) (out= 319)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntryV2.class(in = 519) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__ostream.class(in = 483) (out= 315)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_XMLError_p_t.class(in = 522) (out= 323)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_std__string_t.class(in = 525) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_unsigned_int_t.class(in = 528) (out= 326)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_void.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SimpleSpeciesReference.class(in = 2764) (out= 995)(deflated 64%) adding: org/sbml/libsbml/Species.class(in = 8744) (out= 2613)(deflated 70%) adding: org/sbml/libsbml/SpeciesFeature.class(in = 7339) (out= 2270)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureType.class(in = 6593) (out= 2017)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureValue.class(in = 3698) (out= 1355)(deflated 63%) adding: org/sbml/libsbml/SpeciesGlyph.class(in = 4333) (out= 1540)(deflated 64%) adding: org/sbml/libsbml/SpeciesReference.class(in = 5424) (out= 1750)(deflated 67%) adding: org/sbml/libsbml/SpeciesReferenceGlyph.class(in = 7030) (out= 2234)(deflated 68%) adding: org/sbml/libsbml/SpeciesType.class(in = 2911) (out= 1185)(deflated 59%) adding: org/sbml/libsbml/SpeciesTypeComponentIndex.class(in = 5261) (out= 1670)(deflated 68%) adding: org/sbml/libsbml/SpeciesTypeComponentMapInProduct.class(in = 6092) (out= 1769)(deflated 70%) adding: org/sbml/libsbml/SpeciesTypeInstance.class(in = 5049) (out= 1653)(deflated 67%) adding: org/sbml/libsbml/StoichiometryMath.class(in = 4012) (out= 1478)(deflated 63%) adding: org/sbml/libsbml/StringSet.class(in = 1985) (out= 858)(deflated 56%) adding: org/sbml/libsbml/Style.class(in = 5745) (out= 2036)(deflated 64%) adding: org/sbml/libsbml/SubListOfSpeciesFeatures.class(in = 6190) (out= 1884)(deflated 69%) adding: org/sbml/libsbml/Submodel.class(in = 9914) (out= 3063)(deflated 69%) adding: org/sbml/libsbml/SyntaxChecker.class(in = 2141) (out= 931)(deflated 56%) adding: org/sbml/libsbml/Text.class(in = 10196) (out= 3021)(deflated 70%) adding: org/sbml/libsbml/TextGlyph.class(in = 4951) (out= 1713)(deflated 65%) adding: org/sbml/libsbml/Transformation.class(in = 4844) (out= 1687)(deflated 65%) adding: org/sbml/libsbml/Transformation2D.class(in = 3758) (out= 1418)(deflated 62%) adding: org/sbml/libsbml/Transition.class(in = 10816) (out= 3197)(deflated 70%) adding: org/sbml/libsbml/Trigger.class(in = 4301) (out= 1609)(deflated 62%) adding: org/sbml/libsbml/Unit.class(in = 8221) (out= 2746)(deflated 66%) adding: org/sbml/libsbml/UnitDefinition.class(in = 8699) (out= 2621)(deflated 69%) adding: org/sbml/libsbml/XMLAttributes.class(in = 6024) (out= 1773)(deflated 70%) adding: org/sbml/libsbml/XMLConstructorException.class(in = 1151) (out= 647)(deflated 43%) adding: org/sbml/libsbml/XMLError.class(in = 4410) (out= 1659)(deflated 62%) adding: org/sbml/libsbml/XMLErrorLog.class(in = 4265) (out= 1572)(deflated 63%) adding: org/sbml/libsbml/XMLInputStream.class(in = 4728) (out= 1590)(deflated 66%) adding: org/sbml/libsbml/XMLNamespaces.class(in = 4132) (out= 1457)(deflated 64%) adding: org/sbml/libsbml/XMLNode.class(in = 8021) (out= 2410)(deflated 69%) adding: org/sbml/libsbml/XMLOutputStream.class(in = 9120) (out= 2523)(deflated 72%) adding: org/sbml/libsbml/XMLOwningOutputFileStream.class(in = 1990) (out= 791)(deflated 60%) adding: org/sbml/libsbml/XMLOwningOutputStringStream.class(in = 1701) (out= 741)(deflated 56%) adding: org/sbml/libsbml/XMLToken.class(in = 12798) (out= 3356)(deflated 73%) adding: org/sbml/libsbml/XMLTriple.class(in = 2461) (out= 1085)(deflated 55%) adding: org/sbml/libsbml/double_array.class(in = 1701) (out= 846)(deflated 50%) adding: org/sbml/libsbml/int_array.class(in = 1650) (out= 837)(deflated 49%) adding: org/sbml/libsbml/libsbml.class(in = 20155) (out= 6855)(deflated 65%) adding: org/sbml/libsbml/libsbmlConstants.class(in = 66783) (out= 21730)(deflated 67%) adding: org/sbml/libsbml/libsbmlJNI.class(in = 448179) (out= 83442)(deflated 81%) make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_java_jar make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend BUILDSTDERR: Creating: libsbml.jar BUILDSTDERR: /usr/bin/javac BUILDSTDERR: -cp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java BUILDSTDERR: -source;1.6;-target;1.6 BUILDSTDERR: -d /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/test BUILDSTDERR: test/org/sbml/libsbml/test/annotation/TestCVTerms.java;test/org/sbml/libsbml/test/annotation/TestCVTerms_newSetters.java;test/org/sbml/libsbml/test/annotation/TestCopyAndClone.java;test/org/sbml/libsbml/test/annotation/TestDate_newSetters.java;test/org/sbml/libsbml/test/annotation/TestL3ModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelCreator_newSetters.java;test/org/sbml/libsbml/test/annotation/TestModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelHistory_newSetters.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation2.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotationC.java;test/org/sbml/libsbml/test/annotation/TestValidation.java;test/org/sbml/libsbml/test/math/TestASTNode.java;test/org/sbml/libsbml/test/math/TestReadFromFile1.java;test/org/sbml/libsbml/test/math/TestReadFromFile2.java;test/org/sbml/libsbml/test/math/TestReadMathML.java;test/org/sbml/libsbml/test/math/TestValidASTNode.java;test/org/sbml/libsbml/test/math/TestWriteMathML.java;test/org/sbml/libsbml/test/sbml/TestAlgebraicRule.java;test/org/sbml/libsbml/test/sbml/TestAncestor.java;test/org/sbml/libsbml/test/sbml/TestAssignmentRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCompartmentVolumeRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestConstraint.java;test/org/sbml/libsbml/test/sbml/TestConstraint_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCopyAndClone.java;test/org/sbml/libsbml/test/sbml/TestDelay.java;test/org/sbml/libsbml/test/sbml/TestEvent.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestEvent_newSetters.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestGetMultipleObjects.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestInternalConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw_newSetters.java;test/org/sbml/libsbml/test/sbml/TestL3Compartment.java;test/org/sbml/libsbml/test/sbml/TestL3Event.java;test/org/sbml/libsbml/test/sbml/TestL3KineticLaw.java;test/org/sbml/libsbml/test/sbml/TestL3LocalParameter.java;test/org/sbml/libsbml/test/sbml/TestL3Model.java;test/org/sbml/libsbml/test/sbml/TestL3Parameter.java;test/org/sbml/libsbml/test/sbml/TestL3Reaction.java;test/org/sbml/libsbml/test/sbml/TestL3Species.java;test/org/sbml/libsbml/test/sbml/TestL3SpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestL3Trigger.java;test/org/sbml/libsbml/test/sbml/TestL3Unit.java;test/org/sbml/libsbml/test/sbml/TestListOf.java;test/org/sbml/libsbml/test/sbml/TestModel.java;test/org/sbml/libsbml/test/sbml/TestModel_newSetters.java;test/org/sbml/libsbml/test/sbml/TestModifierSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestParameter.java;test/org/sbml/libsbml/test/sbml/TestParameterRule.java;test/org/sbml/libsbml/test/sbml/TestParameter_newSetters.java;test/org/sbml/libsbml/test/sbml/TestPriority.java;test/org/sbml/libsbml/test/sbml/TestRateRule.java;test/org/sbml/libsbml/test/sbml/TestReaction.java;test/org/sbml/libsbml/test/sbml/TestReaction_newSetters.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile1.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile2.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile3.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile4.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile5.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile6.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile7.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile8.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile9.java;test/org/sbml/libsbml/test/sbml/TestReadSBML.java;test/org/sbml/libsbml/test/sbml/TestRequiredAttributes.java;test/org/sbml/libsbml/test/sbml/TestRequiredElements.java;test/org/sbml/libsbml/test/sbml/TestRule.java;test/org/sbml/libsbml/test/sbml/TestRule_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSBMLConstructorException.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvert.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvertStrict.java;test/org/sbml/libsbml/test/sbml/TestSBMLDocument.java;test/org/sbml/libsbml/test/sbml/TestSBMLError.java;test/org/sbml/libsbml/test/sbml/TestSBMLNamespaces.java;test/org/sbml/libsbml/test/sbml/TestSBMLParentObject.java;test/org/sbml/libsbml/test/sbml/TestSBMLTransforms.java;test/org/sbml/libsbml/test/sbml/TestSBase.java;test/org/sbml/libsbml/test/sbml/TestSBase_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies.java;test/org/sbml/libsbml/test/sbml/TestSpeciesConcentrationRule.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies_newSetters.java;test/org/sbml/libsbml/test/sbml/TestStoichiometryMath.java;test/org/sbml/libsbml/test/sbml/TestSyntaxChecker.java;test/org/sbml/libsbml/test/sbml/TestTrigger.java;test/org/sbml/libsbml/test/sbml/TestUnit.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestUnitKind.java;test/org/sbml/libsbml/test/sbml/TestUnit_newSetters.java;test/org/sbml/libsbml/test/sbml/TestWriteL3SBML.java;test/org/sbml/libsbml/test/sbml/TestWriteSBML.java;test/org/sbml/libsbml/test/xml/TestCopyAndClone.java;test/org/sbml/libsbml/test/xml/TestXMLAttributes.java;test/org/sbml/libsbml/test/xml/TestXMLAttributesC.java;test/org/sbml/libsbml/test/xml/TestXMLError.java;test/org/sbml/libsbml/test/xml/TestXMLErrorC.java;test/org/sbml/libsbml/test/xml/TestXMLNamespaces.java;test/org/sbml/libsbml/test/xml/TestXMLNode.java;test/org/sbml/libsbml/test/xml/TestXMLNode_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLOutputStream.java;test/org/sbml/libsbml/test/xml/TestXMLToken.java;test/org/sbml/libsbml/test/xml/TestXMLToken_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLTriple.java;/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java/AutoTestRunner.java;/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java/TestPrintVersion.java BUILDSTDERR: warning: [options] bootstrap class path not set in conjunction with -source 1.6 BUILDSTDERR: 1 warning make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libsbmlj.so -o libsbmlj.so CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_java_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -I/usr/include/python3.7m -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lpython3.7m -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_ruby_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__slice(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5001:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__delete_at(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5047:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch (std::out_of_range) BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__at(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5057:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_0(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5079:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_1(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5088:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLConverter* SwigDirector_SBMLConverter::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5656:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLDocument* SwigDirector_SBMLConverter::getDocument()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5674:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual const SBMLDocument* SwigDirector_SBMLConverter::getDocument() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5692:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual ConversionProperties SwigDirector_SBMLConverter::getDefaultProperties() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5709:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDefaultProperties"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLNamespaces* SwigDirector_SBMLConverter::getTargetNamespaces()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5726:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getTargetNamespaces"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual ConversionProperties* SwigDirector_SBMLConverter::getProperties() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5800:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getProperties"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual int SwigDirector_SBMLConverter::convert()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5815:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("convert"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLValidator* SwigDirector_SBMLValidator::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5848:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLDocument* SwigDirector_SBMLValidator::getDocument()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5866:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual const SBMLDocument* SwigDirector_SBMLValidator::getDocument() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5884:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual unsigned int SwigDirector_SBMLValidator::validate()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5916:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("validate"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual void SwigDirector_SBMLValidator::clearFailures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5930:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clearFailures"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLResolver* SwigDirector_SBMLResolver::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5956:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4999:127: required from here BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4019:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4019:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5122:131: required from here BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4019:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4019:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLErrorLog_add(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:102522:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_matchesRequiredSBMLNamespacesForAddition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:21842:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_matchesSBMLNamespaces(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:21729:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ReactionGlyph_getSpeciesReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:197886:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_getReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:195286:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReplacedElements_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:140878:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBasePlugin_getReplacedElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:128235:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_getNestedCVTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107938:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBMLErrorLog_getNumFailsWithSeverity(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:103172:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfConstraints_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:59446:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_UnitDefinition_getUnit(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:43310:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnits_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:41691:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getConstraint(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30022:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_setType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:116735:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Iterator___sub__(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3415:27: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: res = SWIG_AsVal_long (obj, val ? &v : 0); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:8310:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ConstIterator___sub__(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3415:27: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: res = SWIG_AsVal_long (obj, val ? &v : 0); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:7727:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Compartment_setSpatialDimensions(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:47630:36: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_double(argv[1], NULL); BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Unit_setExponent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:40867:36: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_double(argv[1], NULL); BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getDisabledPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:20865:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_getSubGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:195405:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Curve_getCurveSegment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:190458:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineSegments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:189757:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOf_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:22875:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_getResourceURI(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107322:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalStyles_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:324200:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalStyles_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:324020:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalRenderInformation_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:323115:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalRenderInformation_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:322935:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineEndings_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:321587:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineEndings_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:321407:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientStops_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:320565:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientStops_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:320385:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalStyles_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:318485:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalStyles_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:318305:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalRenderInformation_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:317336:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalRenderInformation_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:317156:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDrawables_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:315664:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDrawables_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:315484:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfColorDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:313690:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfColorDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:313510:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setVTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:311874:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:311706:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFontStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:311538:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFontWeight(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:311370:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFillRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:311022:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setSpreadMethod(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:310360:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LocalRenderInformation_removeStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304126:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LocalRenderInformation_removeLocalStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304038:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LocalRenderInformation_getStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:303651:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LocalRenderInformation_getLocalStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:303533:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_removeElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:298097:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:297637:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_setVtextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:297092:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_setVTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:296995:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_setTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:296756:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_setFontStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:296588:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_setFontWeight(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:296420:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Text_setVTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:283146:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Text_setTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:282981:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Text_setFontStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:282816:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Text_setFontWeight(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:282651:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GlobalRenderInformation_removeGlobalStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:277296:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GlobalRenderInformation_getStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:276941:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GlobalRenderInformation_getGlobalStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:276823:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GradientBase_removeGradientStop(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:268754:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GradientBase_getGradientStop(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:268508:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GradientBase_setSpreadMethod(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:268181:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_removeLineEnding(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:267439:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getLineEnding(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:267179:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_removeColorDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:266387:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getColorDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:266127:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GraphicalPrimitive2D_setFillRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5219:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:264401:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderLayoutPlugin_removeLocalRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:261009:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderLayoutPlugin_getRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:260776:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderListOfLayoutsPlugin_removeGlobalRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:260209:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderListOfLayoutsPlugin_getRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:259976:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTransitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:257471:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTransitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:257291:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeFunctionTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:256333:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getFunctionTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:256073:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeOutput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255825:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getOutputBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255625:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getOutput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255440:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeInput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255192:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getInputBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254992:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getInput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254807:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfQualitativeSpecies_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:253809:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfQualitativeSpecies_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:253629:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:251861:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_getBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:251741:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:251556:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:249892:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_getBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:249772:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:249587:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionTerms_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:247033:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionTerms_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:246853:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_removeTransition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:245281:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_getTransition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:245045:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_removeQualitativeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:244773:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_getQualitativeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:244537:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeInSpeciesTypeBond(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:240076:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getInSpeciesTypeBond(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239816:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesTypeComponentIndex(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239568:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesTypeComponentIndex(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239308:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesTypeInstance(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239060:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesTypeInstance(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238800:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesFeatureType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238552:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesFeatureType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238292:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SubListOfSpeciesFeatures_setRelation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:237126:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SubListOfSpeciesFeatures_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:236958:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SubListOfSpeciesFeatures_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:236778:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentMapInProducts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:235862:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentMapInProducts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:235682:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_removeSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:233910:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_getSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:233730:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:233512:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:233332:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeature_removeSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:232553:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeature_getSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:232293:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentIndexes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:231027:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentIndexes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:230847:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:229256:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:229076:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeatureType_removePossibleSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:228405:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeatureType_getPossibleSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:228145:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutwardBindingSites_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:227050:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutwardBindingSites_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:226870:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_OutwardBindingSite_setBindingStatus(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:226058:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInSpeciesTypeBonds_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:225198:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInSpeciesTypeBonds_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:225018:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeInstances_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:223427:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeInstances_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:223247:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentReferences_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:221656:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentReferences_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:221476:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureValues_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:219996:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureValues_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:219816:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPossibleSpeciesFeatureValues_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:218558:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPossibleSpeciesFeatureValues_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:218378:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesReferencePlugin_removeSpeciesTypeComponentMapInProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:216610:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesReferencePlugin_getSpeciesTypeComponentMapInProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:216374:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_removeSpeciesFeature(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:215276:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:215040:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getSpeciesFeature(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214763:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_removeOutwardBindingSite(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214491:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getOutwardBindingSite(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214255:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiCompartmentPlugin_removeCompartmentReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:213537:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiCompartmentPlugin_getCompartmentReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:213301:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LayoutModelPlugin_getLayout(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:209216:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLayouts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:207988:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLayouts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:207808:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeAdditionalGraphicalObject(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:207080:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeTextGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206995:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeReactionGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206878:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeSpeciesGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206795:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeCompartmentGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206712:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getGeneralGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205851:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getAdditionalGraphicalObject(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205733:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getTextGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205613:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getReactionGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205495:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getSpeciesGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205377:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getCompartmentGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205259:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTextGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:203555:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTextGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:203375:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactionGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202801:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactionGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202621:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202047:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201867:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201317:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201137:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ReactionGlyph_removeSpeciesReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:198404:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferenceGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:197038:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferenceGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:196858:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_removeSubGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:196052:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_removeReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:195962:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReferenceGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:194237:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReferenceGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:194057:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReferenceGlyph_setRole(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:191653:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGraphicalObjects_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:185202:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGraphicalObjects_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:185018:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_getByIdRef(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:178429:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:178224:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:178044:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGroups_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:177118:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGroups_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:176938:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_removeMember(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:175109:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_getMemberByIdRef(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174909:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_getMember(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174724:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_setKind(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174404:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GroupsModelPlugin_removeGroup(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:173403:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GroupsModelPlugin_getGroup(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:173143:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneProducts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:167962:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneProducts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:167702:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfObjectives_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:161952:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfObjectives_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:161692:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_removeFluxObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:160947:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_getFluxObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:160687:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_setType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:160367:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneAssociations_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:159555:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneAssociations_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:159375:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxObjectives_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:157862:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxObjectives_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:157602:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxBounds_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:156042:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxBounds_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:155862:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FluxBound_setOperation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:155048:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeGeneAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:151030:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getGeneAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:150794:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeGeneProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:150546:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getGeneProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:150286:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149825:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149565:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeFluxBound(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149293:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getFluxBound(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149018:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Submodel_removeDeletion(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:146001:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Submodel_getDeletion(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:145741:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSubmodels_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:141672:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSubmodels_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:141492:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPorts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:140365:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPorts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:140185:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfModelDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:139635:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfModelDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:139455:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfExternalModelDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138905:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfExternalModelDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138725:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDeletions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138175:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDeletions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:137995:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_removeExternalModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:131666:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getModel(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:131439:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getExternalModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:131250:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_removeModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:131002:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:130747:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompModelPlugin_getPort(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:129704:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompModelPlugin_getSubmodel(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:129294:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTNode_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:123317:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:118773:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_addPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:118604:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_setBiologicalQualifierType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107626:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_setModelQualifierType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107538:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNode_getChild(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:95379:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLToken_getNamespacePrefix(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:93151:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLToken_removeNamespace(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:92905:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNamespaces_getPrefix(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:89739:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNamespaces_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:89436:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ConversionProperties_getOption(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:80798:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEventAssignments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:72565:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEventAssignments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:72385:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEvents_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:71039:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEvents_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:70859:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Event_removeEventAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:70245:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Event_getEventAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:70041:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferences_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:68103:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferences_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67919:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReference_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67453:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReference_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67334:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_removeLocalParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:65602:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_removeParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:65514:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_getLocalParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:65080:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_getParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:64923:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:63700:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:63516:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeModifier(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62918:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62798:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeReactant(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62678:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getModifier(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62426:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62205:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getReactant(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:61984:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfRules_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:57591:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfRules_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:57366:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInitialAssignments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:55672:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInitialAssignments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:55492:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalParameters_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:54146:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalParameters_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:53925:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfParameters_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:52985:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfParameters_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:52805:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpecies_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:51401:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpecies_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:51221:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:48824:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:48644:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:46681:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:46501:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:45604:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:45424:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnitDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:44527:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnitDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:44306:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:39253:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:39073:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FunctionDefinition_getArgument(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:38405:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeEvent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:34310:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeReaction(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:34190:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33993:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeInitialAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33869:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33749:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33629:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeCompartment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33509:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33389:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeCompartmentType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33269:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeUnitDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33149:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeFunctionDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33029:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getEvent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30694:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getModifierSpeciesReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30533:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpeciesReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30408:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getReaction(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30223:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRateRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29939:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getAssignmentRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29814:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRateRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29689:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getAssignmentRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29564:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29439:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29250:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getInitialAssignmentBySymbol(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29081:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getInitialAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28935:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28675:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] int res = SWIG_AsVal_unmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: signed_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28454:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getCompartment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28233:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28012:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getCompartmentType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27791:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getUnitDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27570:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getFunctionDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27349:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:26144:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:26025:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:20718:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_setSBOTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19680:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_appendNotes(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19478:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_replaceTopLevelAnnotationElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19173:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:18849:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:18730:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getElementByMetaId(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:16696:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getElementBySId(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:16567:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderCurve_getCurveElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:293249:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderCurve_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:293130:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Polygon_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:294499:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Polygon_removeElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:294761:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcAnd_removeAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:170108:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcOr_removeAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:171344:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_removeGradientDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:266931:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiModelPlugin_removeMultiSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:212455:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCurveElements_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:314724:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMultiSpeciesTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:240990:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFbcAssociations_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:164844:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:319519:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcOr_getAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:170931:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcAnd_getAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:169695:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiModelPlugin_getMultiSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:212189:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getGradientDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:266643:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:319335:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFbcAssociations_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:164532:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCurveElements_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:314540:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMultiSpeciesTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2703:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:240806:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTNode_setDefinitionURL(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:122396:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lruby -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_ruby_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/../swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -I/usr/include/R -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:90348:14: warning: unused variable 'arg1' [-Wunused-variable] BUILDSTDERR: ASTNode_t *arg1 = (ASTNode_t *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:90354:7: warning: unused variable 'ecode' [-Wunused-variable] BUILDSTDERR: int ecode = 0; BUILDSTDERR: ^~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_Model_p_SBMLErrorLog_p_void__int(Model*, SBMLErrorLog*, void*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111757:10: warning: unused variable 'arg1' [-Wunused-variable] BUILDSTDERR: Model *arg1 = (Model *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111758:17: warning: unused variable 'arg2' [-Wunused-variable] BUILDSTDERR: SBMLErrorLog *arg2 = (SBMLErrorLog *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111759:9: warning: unused variable 'arg3' [-Wunused-variable] BUILDSTDERR: void *arg3 = (void *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111765:7: warning: unused variable 'ecode' [-Wunused-variable] BUILDSTDERR: int ecode = 0; BUILDSTDERR: ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML_5.17.0_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/../swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a -lperl -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles 0 + pushd ../build-docs ~/build/BUILD/libSBML-5.17.0-Source/build-docs ~/build/BUILD/libSBML-5.17.0-Source/build ~/build/BUILD/libSBML-5.17.0-Source/build2 ~/build/BUILD/libSBML-5.17.0-Source + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub BUILDSTDERR: ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess BUILDSTDERR: ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static --with-expat=no --with-libxml=yes --enable-layout --enable-comp --enable-fbc --enable-qual BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for x86_64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... yes checking for autoconf... autoconf checking for aclocal... aclocal checking whether -Wno-long-double is supported... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for x86_64-redhat-linux-gnu-g77... no checking for x86_64-redhat-linux-gnu-xlf... no checking for x86_64-redhat-linux-gnu-f77... no checking for x86_64-redhat-linux-gnu-frt... no checking for x86_64-redhat-linux-gnu-pgf77... no checking for x86_64-redhat-linux-gnu-cf77... no checking for x86_64-redhat-linux-gnu-fort77... no checking for x86_64-redhat-linux-gnu-fl32... no checking for x86_64-redhat-linux-gnu-af77... no checking for x86_64-redhat-linux-gnu-xlf90... no checking for x86_64-redhat-linux-gnu-f90... no checking for x86_64-redhat-linux-gnu-pgf90... no checking for x86_64-redhat-linux-gnu-pghpf... no checking for x86_64-redhat-linux-gnu-epcf90... no checking for x86_64-redhat-linux-gnu-gfortran... no checking for x86_64-redhat-linux-gnu-g95... no checking for x86_64-redhat-linux-gnu-xlf95... no checking for x86_64-redhat-linux-gnu-f95... no checking for x86_64-redhat-linux-gnu-fort... no checking for x86_64-redhat-linux-gnu-ifort... no checking for x86_64-redhat-linux-gnu-ifc... no checking for x86_64-redhat-linux-gnu-efc... no checking for x86_64-redhat-linux-gnu-pgfortran... no checking for x86_64-redhat-linux-gnu-pgf95... no checking for x86_64-redhat-linux-gnu-lf95... no checking for x86_64-redhat-linux-gnu-ftn... no checking for x86_64-redhat-linux-gnu-nagfor... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for x86_64-redhat-linux-gnu-ar... no checking for ar... ar checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for bash... /usr/bin/bash checking if dolt supports this host... yes, replacing libtool checking for isnan in -lm... yes checking for xml2-config... /usr/bin/xml2-config checking for libxml2 - version >= 2.6.16... yes (version 2.9.8) checking for zlib library... yes checking for deflate in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for possibly buggy zlib... no checking for bzip2 library... yes checking for BZ2_bzopen in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for ANSI C header files... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for size_t... yes configure: creating ./config.status config.status: creating config/makefile-common-vars.mk config.status: creating config/lt_link_helper.sh config.status: creating config/mkoctfile_wrapper.sh config.status: creating config/chk_swig_version.sh config.status: creating ./Makefile config.status: creating libsbml.spec config.status: creating src/Makefile config.status: creating src/sbml/common/Makefile config.status: creating src/sbml/common/libsbml-version.h config.status: creating src/bindings/Makefile config.status: creating src/bindings/python/Makefile config.status: creating src/bindings/python/setup.py config.status: creating src/bindings/perl/Makefile config.status: creating src/bindings/perl/Makefile.PL config.status: creating src/bindings/matlab/Makefile config.status: creating src/bindings/matlab/test/Makefile config.status: creating src/bindings/octave/Makefile config.status: creating src/bindings/octave/test/Makefile config.status: creating src/bindings/java/Makefile config.status: creating src/bindings/java/Manifest.txt config.status: creating src/bindings/ruby/Makefile config.status: creating src/bindings/csharp/Makefile config.status: creating src/sbml/annotation/Makefile config.status: creating src/sbml/annotation/test/Makefile config.status: creating src/sbml/math/Makefile config.status: creating src/sbml/math/test/Makefile config.status: creating src/sbml/math-legacy/Makefile config.status: creating src/sbml/math-legacy/test/Makefile config.status: creating src/sbml/units/Makefile config.status: creating src/sbml/units/test/Makefile config.status: creating src/sbml/Makefile config.status: creating src/sbml/test/Makefile config.status: creating src/sbml/util/Makefile config.status: creating src/sbml/util/test/Makefile config.status: creating src/sbml/validator/Makefile config.status: creating src/sbml/validator/constraints/Makefile config.status: creating src/sbml/validator/test/Makefile config.status: creating src/sbml/validator/test/test-data/Makefile config.status: creating src/sbml/validator/test/test-data/sbml-general-consistency-constraints/Makefile config.status: creating src/sbml/xml/Makefile config.status: creating src/sbml/xml/test/Makefile config.status: creating src/sbml/compress/Makefile config.status: creating src/sbml/extension/Makefile config.status: creating src/sbml/extension/test/Makefile config.status: creating src/sbml/extension/RegisterExtensions.h config.status: creating src/sbml/extension/RegisterExtensions.cxx config.status: creating src/sbml/conversion/Makefile config.status: creating src/sbml/conversion/test/Makefile config.status: creating src/sbml/packages/Makefile config.status: creating src/sbml/packages/comp/Makefile config.status: creating src/sbml/packages/comp/common/Makefile config.status: creating src/sbml/packages/comp/extension/Makefile config.status: creating src/sbml/packages/comp/extension/test/Makefile config.status: creating src/sbml/packages/comp/sbml/Makefile config.status: creating src/sbml/packages/comp/sbml/test/Makefile config.status: creating src/sbml/packages/comp/util/Makefile config.status: creating src/sbml/packages/comp/util/test/Makefile config.status: creating src/sbml/packages/comp/validator/Makefile config.status: creating src/sbml/packages/comp/validator/constraints/Makefile config.status: creating src/sbml/packages/comp/validator/test/Makefile config.status: creating src/sbml/packages/comp/validator/test/test-data/Makefile config.status: creating examples/c++/comp/Makefile config.status: creating examples/c/comp/Makefile config.status: creating src/sbml/packages/fbc/common/Makefile config.status: creating src/sbml/packages/fbc/extension/Makefile config.status: creating src/sbml/packages/fbc/extension/test/Makefile config.status: creating src/sbml/packages/fbc/Makefile config.status: creating src/sbml/packages/fbc/sbml/Makefile config.status: creating src/sbml/packages/fbc/util/Makefile config.status: creating src/sbml/packages/fbc/validator/constraints/Makefile config.status: creating src/sbml/packages/fbc/validator/Makefile config.status: creating src/sbml/packages/fbc/validator/test/Makefile config.status: creating src/sbml/packages/fbc/validator/test/test-data/Makefile config.status: creating examples/c++/fbc/Makefile config.status: creating src/sbml/packages/layout/Makefile config.status: creating src/sbml/packages/layout/common/Makefile config.status: creating src/sbml/packages/layout/extension/Makefile config.status: creating src/sbml/packages/layout/sbml/Makefile config.status: creating src/sbml/packages/layout/sbml/test/Makefile config.status: creating src/sbml/packages/layout/util/Makefile config.status: creating src/sbml/packages/layout/validator/Makefile config.status: creating src/sbml/packages/layout/validator/constraints/Makefile config.status: creating src/sbml/packages/layout/validator/test/Makefile config.status: creating src/sbml/packages/layout/validator/test/test-data/Makefile config.status: creating src/sbml/packages/qual/Makefile config.status: creating src/sbml/packages/qual/common/Makefile config.status: creating src/sbml/packages/qual/extension/Makefile config.status: creating src/sbml/packages/qual/sbml/Makefile config.status: creating src/sbml/packages/qual/sbml/test/Makefile config.status: creating src/sbml/packages/qual/validator/Makefile config.status: creating src/sbml/packages/qual/validator/constraints/Makefile config.status: creating src/sbml/packages/qual/validator/test/Makefile config.status: creating src/sbml/packages/qual/validator/test/test-data/Makefile config.status: creating examples/c++/qual/Makefile config.status: creating docs/Makefile config.status: creating docs/index.html config.status: creating docs/src/Makefile config.status: creating docs/src/doxygen-config-c.txt config.status: creating docs/src/doxygen-config-cpp.txt config.status: creating docs/src/doxygen-config-csharp.txt config.status: creating docs/src/doxygen-config-octave.txt config.status: creating docs/src/doxygen-config-python.txt config.status: creating docs/src/doxygen-config-perl.txt config.status: creating docs/src/doxygen-config-matlab.txt config.status: creating docs/src/common-text/libsbml-downloading.html config.status: creating docs/src/common-text/libsbml-group-comp-intro.html config.status: creating docs/src/common-text/libsbml-group-fbc-intro.html config.status: creating docs/src/common-text/libsbml-group-groups-intro.html config.status: creating docs/src/common-text/libsbml-group-layout-intro.html config.status: creating docs/src/common-text/libsbml-group-multi-intro.html config.status: creating docs/src/common-text/libsbml-group-qual-intro.html config.status: creating docs/src/common-text/libsbml-group-render-intro.html config.status: creating docs/src/common-text/libsbml-installation.html config.status: creating docs/src/common-text/libsbml-version.html config.status: creating docs/src/common-text/sbml-specifications-table.html config.status: creating docs/src/java-substitutions/libsbmlConstants.java config.status: creating examples/c/Makefile config.status: creating examples/c++/Makefile config.status: creating examples/java/Makefile config.status: creating examples/csharp/Makefile config.status: creating examples/c++/layout/Makefile config.status: creating src/bindings/csharp/local-downcast-astplugins.i config.status: creating src/bindings/csharp/local-downcast-extension.i config.status: creating src/bindings/csharp/local-downcast-namespaces.i config.status: creating src/bindings/csharp/local-downcast-converters.i config.status: creating src/bindings/csharp/local-packages.i config.status: creating src/bindings/java/local-downcast-astplugins.i config.status: creating src/bindings/java/local-downcast-extension.i config.status: creating src/bindings/java/local-downcast-namespaces.i config.status: creating src/bindings/java/local-downcast-converters.i config.status: creating src/bindings/java/local-packages.i config.status: creating src/bindings/perl/local-downcast.cpp config.status: creating src/bindings/perl/local-downcast-astplugins.cpp config.status: creating src/bindings/perl/local-downcast-extension.cpp config.status: creating src/bindings/perl/local-downcast-namespaces.cpp config.status: creating src/bindings/perl/local-downcast-converters.cpp config.status: creating src/bindings/perl/local-downcast-plugins.cpp config.status: creating src/bindings/perl/local-packages.i config.status: creating src/bindings/python/local-downcast.cpp config.status: creating src/bindings/python/local-downcast-astplugins.cpp config.status: creating src/bindings/python/local-downcast-extension.cpp config.status: creating src/bindings/python/local-downcast-namespaces.cpp config.status: creating src/bindings/python/local-downcast-converters.cpp config.status: creating src/bindings/python/local-downcast-plugins.cpp config.status: creating src/bindings/python/local-packages.i config.status: creating src/bindings/ruby/local-downcast.cpp config.status: creating src/bindings/ruby/local-downcast-astplugins.cpp config.status: creating src/bindings/ruby/local-downcast-extension.cpp config.status: creating src/bindings/ruby/local-downcast-namespaces.cpp config.status: creating src/bindings/ruby/local-downcast-converters.cpp config.status: creating src/bindings/ruby/local-downcast-plugins.cpp config.status: creating src/bindings/ruby/local-packages.i config.status: creating src/bindings/swig/libsbml-packages.h config.status: creating src/bindings/swig/libsbml-packages.i config.status: creating macosx/Makefile config.status: creating macosx/build.sh config.status: creating macosx/resources/package-intro.txt config.status: creating macosx/resources/package-readme.txt config.status: creating macosx/libsbml-package.pmdoc/01local-contents.xml config.status: creating macosx/libsbml-package.pmdoc/01local.xml config.status: creating macosx/libsbml-package.pmdoc/index.xml config.status: creating src/sbml/common/libsbml-config-common.h config.status: creating src/sbml/common/libsbml-package.h config.status: src/sbml/common/libsbml-package.h is unchanged config.status: creating src/sbml/common/libsbml-namespace.h config.status: src/sbml/common/libsbml-namespace.h is unchanged BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking ---------------------------------------------------------------------- libSBML version 5.17.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host "35c43dc9e3d64f45961119b446873ac5" host type = linux host vendor = redhat host operating system = linux-gnu host CPU architecture = x86_64 General build flags: CC = gcc CXX = g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection CFLAGS_ARCH = CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection CXXFLAGS_ARCH = LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LDFLAGS_ARCH = LIBS = -lm -lz -lbz2 XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LDFLAGS for XML = LIBS for XML = -lxml2 -lz -llzma -lm -ldl XML2_CONFIG = /usr/bin/xml2-config Other libSBML configuration settings: Installation $prefix = /usr Using zlib with path = autodetect Using bzip2 with path = autodetect Support for SBML packages: SBML 'comp' = yes SBML 'fbc' = yes SBML 'layout' = yes SBML 'qual' = yes Other potentially important settings: Compression support is enabled for .zip, .gz and .bz2 files Value of $LD_LIBRARY_PATH = ---------------------------------------------------------------------- + /usr/bin/make -O -j2 libsbml.pc + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qZKTw9 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 + cd libSBML-5.17.0-Source + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.17.0-Source -B/builddir/build/BUILD/libSBML-5.17.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 35%] Built target sbml-static /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target sbml /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 70%] Built target test_comp_extensions /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 71%] Built target test_comp_sbase /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Built target test_comp_util /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 72%] Built target test_comp_validator /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 73%] Built target test_sbml_package_fbc /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 74%] Built target test_fbc_validator /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Built target test_extension_package_groups /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 75%] Built target test_groups_validator /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Built target test_sbml_package_layout /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 76%] Built target test_layout_validator /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_sbml_package_multi /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_multi_validator /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_extension_package_qual /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 77%] Built target test_sbml_package_qual /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 78%] Built target test_qual_validator /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Built target test_sbml_package_render /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 81%] Built target test_render_validator /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 83%] Built target test_sbml_annotation /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Built target test_sbml_conversion /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 84%] Built target test_sbml_extension /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 86%] Built target test_sbml_math /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 94%] Built target test_sbml_sbml /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 95%] Built target test_sbml_units /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Built target test_sbml_util /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 96%] Built target test_sbml_validator /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target test_sbml_xml /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_csharp_swig /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_csharp_native_lib /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_csharp_managed_lib /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_java_swig /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_java_lib /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_jar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_java_jar /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 98%] Built target binding_perl_swig /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_perl_lib /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_python_swig /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_python_lib /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 99%] Built target binding_ruby_swig /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_ruby_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_r_swig /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_r_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' cd /builddir/build/BUILD/libSBML-5.17.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.17.0-Source /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML_5.17.0_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.17.0-Source/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/COPYING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/FUNDING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/LICENSE.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/OLD_NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/README.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/pkgconfig/libsbml.pc -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/Replacing.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/sbml/Submodel.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/util/SBMLUri.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/CompValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/CompIdBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueComponentIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueModelIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniquePortIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniquePortReferences.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/common/FbcExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/common/fbcfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/extension/FbcExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/extension/FbcModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/extension/FbcReactionPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/extension/FbcSpeciesPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/Association.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/FbcAnd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/FbcAssociation.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/FbcOr.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/FluxBound.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/FluxObjective.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/GeneAssociation.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/GeneProduct.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/GeneProductAssociation.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/include/sbml/packages/fbc/sbml/GeneProductRef.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/cmake/sbml-static-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcs.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcsP.dll -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbmlj.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/java/libsbmlj.jar -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so BUILDSTDERR: Notice: the libSBML R interface must be installed separately. BUILDSTDERR: To install it, please execute the following shell command: BUILDSTDERR: R CMD INSTALL /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/r/libSBML_5.17.0_R_x86_64-redhat-linux-gnu.tar.gz make: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' + rm -f /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/FUNDING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/NEWS.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/OLD_NEWS.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/README.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/libsbml/VERSION.txt + mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/java + mv /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/java/libsbmlj.jar /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/java/ + mv /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbmlj.so /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml/ + mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/R/library build/src/bindings/r/libSBML_5.17.0_R_x86_64-redhat-linux-gnu.tar.gz BUILDSTDERR: * installing *binary* package 'libSBML' ... BUILDSTDERR: * DONE (libSBML) + rm -rf /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/R/library/libSBML/R.css + make -C build-docs install-pc DESTDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 make: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build-docs' /builddir/build/BUILD/libSBML-5.17.0-Source/build-docs/config/install-sh -c libsbml.pc -m 0644 "/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/pkgconfig/libsbml.pc" make: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build-docs' + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml/README-ruby.txt + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 5.17.0-11.fc30 --unique-debug-suffix -5.17.0-11.fc30.x86_64 --unique-debug-src-base libsbml-5.17.0-11.fc30.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libSBML-5.17.0-Source explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcs.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/R/library/libSBML/libs/libSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcs.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/R/library/libSBML/libs/libSBML.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml/libsbmlj.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml/libsbmlj.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7/site-packages/libsbml/_libsbml.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7/site-packages/libsbml/_libsbml.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml.so.5.17.0 extracting debug info from /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/libsbml.so.5.17.0 /usr/lib/rpm/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. BUILDSTDERR: cpio: build/src/L3Parser.cpp: Cannot stat: No such file or directory BUILDSTDERR: cpio: build/src/L3Parser.ypp: Cannot stat: No such file or directory BUILDSTDERR: 150256 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/lib64/python3.7 using /usr/bin/python3.7 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.sjtr7b + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + pushd build ~/build/BUILD/libSBML-5.17.0-Source/build ~/build/BUILD/libSBML-5.17.0-Source + ctest --force-new-ctest-process -VV -E test_ruby_binding UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.17.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.17.0-Source/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.17.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.17.0-Source/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libSBML-5.17.0-Source/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_comp_extensions_run 1: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/extension/test/test_comp_extensions 1: Environment variables: 1: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/extension/test 1: Test timeout computed to be: 3000 1: Running suite(s): SBMLCompExtensionObjects 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 1/71 Test #1: test_comp_extensions_run ............... Passed 1.74 sec test 2 Start 2: test_comp_sbase_run 2: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/sbml/test/test_comp_sbase 2: Environment variables: 2: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/sbml/test 2: Test timeout computed to be: 3000 2: Running suite(s): SBMLCompSBaseObjects 2: SBMLCompSBaseObjects 2: comp_deletion 2: comp_externalModelDefinition 2: comp_modelDefinition 2: comp_port 2: comp_replacedBy 2: comp_replacedElement 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 69, Failures: 0, Errors: 0 2/71 Test #2: test_comp_sbase_run .................... Passed 1.32 sec test 3 Start 3: test_comp_util_run 3: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/util/test/test_comp_util 3: Environment variables: 3: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/util/test 3: Test timeout computed to be: 3000 3: Running suite(s): SBMLCompURIResolvers 3: SBMLCompLevelVersionConversion 3: SBMLCompFlatteningUnknownPackageRefs 3: SBMLCompFlatteningErrorMessages 3: SBMLCompFlatteningConverter 3: ExternalModelResolving 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 354, Failures: 0, Errors: 0 3/71 Test #3: test_comp_util_run ..................... Passed 6.04 sec test 4 Start 4: test_comp_validator_run 4: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/comp/validator/test/test_comp_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test" 4: Environment variables: 4: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test 4: Test timeout computed to be: 3000 4: 4: Validator testrunner 4: ==================== 4: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/comp/validator/test/test-data 4: 4: Testing General XML Consistency Constraints (20000 - 29999). 4: 100%: Checks: 279, Failures: 0 4: Testing Id Consistency Constraints (10300 - 10399). 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 20, Failures: 0 4/71 Test #4: test_comp_validator_run ................ Passed 2.19 sec test 5 Start 5: test_sbml_package_fbc_run 5: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/extension/test/test_sbml_package_fbc 5: Environment variables: 5: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/extension/test 5: Test timeout computed to be: 3000 5: Running suite(s): FbcExtension 5: WriteFbcExtension 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 36, Failures: 0, Errors: 0 5/71 Test #5: test_sbml_package_fbc_run .............. Passed 2.29 sec test 6 Start 6: test_fbc_validator_run 6: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/fbc/validator/test/test_fbc_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test" 6: Environment variables: 6: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test 6: Test timeout computed to be: 3000 6: 6: Validator testrunner 6: ==================== 6: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/fbc/validator/test/test-data 6: 6: Testing General XML Consistency Constraints (20000 - 29999). 6: 100%: Checks: 170, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 11, Failures: 0 6/71 Test #6: test_fbc_validator_run ................. Passed 1.84 sec test 7 Start 7: test_extension_package_groups_run 7: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/extension/test/test_extension_package_groups 7: Environment variables: 7: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/extension/test 7: Test timeout computed to be: 3000 7: Running suite(s): GroupsExtension 7: WriteGroupsExtension 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 7/71 Test #7: test_extension_package_groups_run ...... Passed 1.13 sec test 8 Start 8: test_groups_validator_run 8: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/groups/validator/test/test_groups_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test" 8: Environment variables: 8: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test 8: Test timeout computed to be: 3000 8: 8: Validator testrunner 8: ==================== 8: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/groups/validator/test/test-data 8: 8: Testing General XML Consistency Constraints (20000 - 29999). 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 8/71 Test #8: test_groups_validator_run .............. Passed 0.93 sec test 9 Start 9: test_sbml_package_layout_run 9: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/sbml/test/test_sbml_package_layout 9: Environment variables: 9: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/sbml/test 9: Test timeout computed to be: 3000 9: Running suite(s): Point 9: Dimensions 9: BoundingBox 9: LineSegment 9: CubicBezier 9: Curve 9: GraphicalObject 9: CompartmentGlyph 9: SpeciesGlyph 9: ReactionGlyph 9: GeneralGlyph 9: ReferenceGlyph 9: SpeciesReferenceGlyph 9: TextGlyph 9: Layout 9: LayoutCreation 9: LayoutFormatter 9: SBMLHandler 9: LayoutWriting 9: 100%: Checks: 288, Failures: 0, Errors: 0 9/71 Test #9: test_sbml_package_layout_run ........... Passed 2.09 sec test 10 Start 10: test_layout_validator_run 10: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/layout/validator/test/test_layout_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test" 10: Environment variables: 10: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test 10: Test timeout computed to be: 3000 10: 10: Validator testrunner 10: ==================== 10: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/layout/validator/test/test-data 10: 10: Testing General XML Consistency Constraints (20000 - 29999). 10: 100%: Checks: 223, Failures: 0 10: Testing Id Consistency Constraints (10300 - 10399). 10: 100%: Checks: 18, Failures: 0 10/71 Test #10: test_layout_validator_run .............. Passed 2.39 sec test 11 Start 11: test_sbml_package_multi_run 11: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/extension/test/test_sbml_package_multi 11: Environment variables: 11: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/extension/test 11: Test timeout computed to be: 3000 11: Running suite(s): MultiExtension 11: MultiCheckConsistency 11: MultiAST 11: 100%: Checks: 16, Failures: 0, Errors: 0 11/71 Test #11: test_sbml_package_multi_run ............ Passed 1.42 sec test 12 Start 12: test_multi_validator_run 12: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/multi/validator/test/test_multi_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test" 12: Environment variables: 12: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test 12: Test timeout computed to be: 3000 12: 12: Validator testrunner 12: ==================== 12: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/multi/validator/test/test-data 12: 12: Testing MathML Consistency Constraints (10200 - 10299). 12: 100%: Checks: 5, Failures: 0 12: Testing General XML Consistency Constraints (20000 - 29999). 12: 100%: Checks: 123, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10999). 12: 100%: Checks: 16, Failures: 0 12/71 Test #12: test_multi_validator_run ............... Passed 1.90 sec test 13 Start 13: test_extension_package_qual_run 13: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/extension/test/test_extension_package_qual 13: Environment variables: 13: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/extension/test 13: Test timeout computed to be: 3000 13: Running suite(s): QualExtension 13: WriteQualExtension 13: ReadQualExtension 13: GetAllElements 13: 100%: Checks: 20, Failures: 0, Errors: 0 13/71 Test #13: test_extension_package_qual_run ........ Passed 1.88 sec test 14 Start 14: test_sbml_package_qual_run 14: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/sbml/test/test_sbml_package_qual 14: Environment variables: 14: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/sbml/test 14: Test timeout computed to be: 3000 14: Running suite(s): Input 14: Output 14: FunctionTerm 14: Transition 14: QualitativeSpecies 14: DefaultTerm 14: ListOfFunctionTerms 14: CopyAndClone 14: 100%: Checks: 73, Failures: 0, Errors: 0 14/71 Test #14: test_sbml_package_qual_run ............. Passed 1.94 sec test 15 Start 15: test_qual_validator_run 15: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/qual/validator/test/test_qual_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test" 15: Environment variables: 15: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test 15: Test timeout computed to be: 3000 15: 15: Validator testrunner 15: ==================== 15: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/qual/validator/test/test-data 15: 15: Testing General XML Consistency Constraints (20000 - 29999). 15: 100%: Checks: 81, Failures: 0 15: Testing Id Consistency Constraints (10300 - 10399). 15: 100%: Checks: 4, Failures: 0 15: Testing Math Consistency Constraints (10200 - 10299). 15: 100%: Checks: 3, Failures: 0 15/71 Test #15: test_qual_validator_run ................ Passed 2.48 sec test 16 Start 16: test_sbml_package_render_run 16: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/sbml/test/test_sbml_package_render 16: Environment variables: 16: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/sbml/test 16: Test timeout computed to be: 3000 16: Running suite(s): RenderExtension 16: RelAbsVector 16: ColorDefinition 16: GradientStop 16: RenderPoint 16: RenderCubicBezier 16: GradientBaseTest 16: LinearGradient 16: RadialGradient 16: Transformation 16: Transformation2D 16: Image 16: GraphicalPrimitive1D 16: RenderCurve 16: Text 16: GraphicalPrimitive2D 16: Rectangle 16: Ellipse 16: Polygon 16: Group 16: LineEnding 16: Style 16: GlobalStyle 16: LocalStyle 16: RenderInformationBase 16: GlobalRenderInformation 16: LocalRenderInformation 16: RenderReading 16: RenderWriting 16: 100%: Checks: 136, Failures: 0, Errors: 0 16/71 Test #16: test_sbml_package_render_run ........... Passed 4.44 sec test 17 Start 17: test_render_validator_run 17: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/packages/render/validator/test/test_render_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test" 17: Environment variables: 17: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test 17: Test timeout computed to be: 3000 17: 17: Validator testrunner 17: ==================== 17: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/packages/render/validator/test/test-data 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 111, Failures: 0 17/71 Test #17: test_render_validator_run .............. Passed 3.24 sec test 18 Start 18: test_sbml_annotation_run 18: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/annotation/test/test_sbml_annotation 18: Environment variables: 18: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/annotation/test 18: Test timeout computed to be: 3000 18: Running suite(s): CVTerms 18: CVTerms_newSetters 18: ModelHistory 18: Date_newSetters 18: ModelCreator_newSetters 18: ModelHistory_newSetters 18: CopyAndClone 18: RDFAnnotation 18: RDFAnnotation2 18: Validation 18: RDFAnnotation_C 18: L3ModelHistory 18: SyncAnnotation 18: RDFAnnotationMetaid 18: RDFAnnotationNestedCVTerm 18: RDFAnnotationV4 18: 100%: Checks: 180, Failures: 0, Errors: 0 18/71 Test #18: test_sbml_annotation_run ............... Passed 2.22 sec test 19 Start 19: test_sbml_conversion_run 19: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/conversion/test/test_sbml_conversion 19: Environment variables: 19: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/conversion/test 19: Test timeout computed to be: 3000 19: Running suite(s): ConversionOption 19: SBMLRuleConverter 19: ConversionProperties 19: SBMLConverterRegistry 19: UnitsConverter 19: UnitsConverter2 19: UnitsConverterL2 19: InferUnitsConverter 19: StripPackageConverter 19: LevelVersionConverter 19: RateOfConverter 19: 100%: Checks: 170, Failures: 0, Errors: 0 19/71 Test #19: test_sbml_conversion_run ............... Passed 2.60 sec test 20 Start 20: test_sbml_extension_run 20: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/extension/test/test_sbml_extension 20: Environment variables: 20: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/extension/test 20: Test timeout computed to be: 3000 20: Running suite(s): SBaseExtensionPoint 20: SBasePlugin 20: SBasePluginCreator 20: SBasePluginCreatorBase 20: SBMLDocumentPlugin 20: SBMLExtension 20: SBMLExtensionNamespaces 20: SBMLExtensionRegistry 20: TestUnknownPackages 20: 100%: Checks: 30, Failures: 0, Errors: 0 20/71 Test #20: test_sbml_extension_run ................ Passed 1.13 sec test 21 Start 21: test_sbml_math_run 21: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/math/test/test_sbml_math 21: Environment variables: 21: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/math/test 21: Test timeout computed to be: 3000 21: Running suite(s): ASTNode 21: FormulaFormatter 21: FormulaParser 21: L3FormulaFormatter 21: L3FormulaParser 21: L3FormulaParserC 21: FormulaTokenizer 21: ReadMathML 21: NewReadMathML 21: WriteMathML 21: WriteMathMLFromAST 21: NewWriteMathMLFromAST 21: test-data/mathML_1.xml 21: test-data/mathML_2.xml 21: TestValidASTNode 21: NewASTNode 21: TestChildFunctions 21: TestGetValue 21: 100%: Checks: 1035, Failures: 0, Errors: 0 21/71 Test #21: test_sbml_math_run ..................... Passed 3.01 sec test 22 Start 22: test_sbml_sbml_run 22: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/test/test_sbml_sbml 22: Environment variables: 22: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test 22: Test timeout computed to be: 3000 22: Running suite(s): ReadSBML 22: SBMLValidator API 22: RenameIDs 22: RemoveFromParent 22: GetMultipleObjects 22: WriteSBML 22: WriteL3SBML 22: WriteL3V2SBML 22: AlgebraicRule 22: AssignmentRule 22: Compartment 22: L3_Compartment 22: Compartment_newSetters 22: CompartmentType 22: CompartmentType_newSetters 22: CompartmentVolumeRule 22: Constraint 22: Constraint_newSetters 22: Delay 22: Event 22: L3_Event 22: Event_newSetters 22: EventAssignment 22: EventAssignment_newSetters 22: FunctionDefinition 22: FunctionDefinition_newSetters 22: InitialAssignment 22: InitialAssignment_newSetters 22: KineticLaw 22: KineticLaw_newSetters 22: L3_KineticLaw 22: ListOf 22: Model 22: L3_Model 22: Model_newSetters 22: ModifierSpeciesReference 22: Parameter 22: L3_Parameter 22: L3_LocalParameter 22: Parameter_newSetters 22: ParameterRule 22: Priority 22: RateRule 22: Reaction 22: L3_Reaction 22: Reaction_newSetters 22: Rule 22: Rule_newSetters 22: SBase 22: SBase_newSetters 22: Species 22: L3_Species 22: Species_newSetters 22: SpeciesReference 22: L3_SpeciesReference 22: SpeciesReference_newSetters 22: SpeciesConcentrationRule 22: SpeciesType 22: SpeciesType_newSetters 22: StoichiometryMath 22: Trigger 22: L3Trigger 22: Unit 22: L3_Unit 22: Unit_newSetters 22: UnitDefinition 22: UnitDefinition_newSetters 22: UnitKind 22: CopyAndClone 22: SBMLConvert 22: SBMLConvertStrict 22: SBMLConvertFromL3V2 22: SBMLDocument 22: SBMLError 22: test-data/l1v1-branch.xml 22: test-data/l1v1-units.xml 22: test-data/l1v1-rules.xml 22: test-data/l1v1-minimal.xml 22: test-data/l2v1-assignment.xml 22: test-data/l2v2-newComponents.xml 22: test-data/l2v3-all.xml 22: test-data/l2v4-new.xml 22: test-data/l3v1-new.xml 22: test-data/l2v5-all.xml 22: test-data/l3v2-all.xml 22: test-data/l3v2-no-model.xml 22: test-data/l3v2-empty-lo-1.xml 22: test-data/l3v2-empty-lo-2.xml 22: test-data/l3v2-empty-math.xml 22: test-data/l3v2-empty-event.xml 22: test-data/l3v2-empty-event2.xml 22: ConsistencyChecks 22: ParentObject 22: AncestorObject 22: InternalConsistencyChecks 22: HasReqdAtt 22: HasReqdElements 22: SBMLNamespaces 22: SyntaxChecker 22: SBMLConstructorException 22: SBMLTransforms 22: GetMultipleObjects 22: LevelCompatibility 22: SBaseIdName 22: Generic Attribute Functions 22: 100%: Checks: 1730, Failures: 0, Errors: 0 22/71 Test #22: test_sbml_sbml_run ..................... Passed 5.49 sec test 23 Start 23: test_sbml_units_run 23: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/units/test/test_sbml_units 23: Environment variables: 23: srcdir=/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/units/test 23: Test timeout computed to be: 3000 23: Running suite(s): UtilsUnit 23: UtilsUnitDefinition 23: UnitFormulaFormatter 23: UnitFormulaFormatter1 23: FormulaUnitData 23: FormulaUnitDataMap 23: DerivedUnitDefinition 23: UnitFormulaFormatter2 23: CalcUnitDefinition 23: UnitFormulaFormatter3 23: DerivedUnitDefinitionUndefined 23: 100%: Checks: 173, Failures: 0, Errors: 0 23/71 Test #23: test_sbml_units_run .................... Passed 1.95 sec test 24 Start 24: test_sbml_util_run 24: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/util/test/test_sbml_util 24: Test timeout computed to be: 3000 24: Running suite(s): memory 24: util 24: List 24: Stack 24: StringBuffer 24: 100%: Checks: 57, Failures: 0, Errors: 0 24/71 Test #24: test_sbml_util_run ..................... Passed 0.16 sec test 25 Start 25: test_sbml_validator_run 25: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/validator/test/test_sbml_validator "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test" 25: Test timeout computed to be: 3000 25: 25: Validator testrunner 25: ==================== 25: using test data from : /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/test-data 25: using conversion test data from: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/validator/test/test-data-conversion 25: 25: Testing Bad XML Constraints (0000 - 10000). 25: 100%: Checks: 55, Failures: 0 25: Testing General XML Consistency Constraints (10000 - 10199). 25: 100%: Checks: 195, Failures: 0 25: Testing General MathML Consistency Constraints (10200 - 10299). 25: 100%: Checks: 508, Failures: 0 25: Testing Id Consistency Constraints (10300 - 10399). 25: 100%: Checks: 509, Failures: 0 25: Testing General Annotation Consistency Constraints (10400 - 10499). 25: 100%: Checks: 65, Failures: 0 25: Testing Unit Consistency Constraints (10500 - 10599). 25: 100%: Checks: 1177, Failures: 0 25: Testing Unit Consistency Constraints (20000 - 29999). 25: 100%: Checks: 362, Failures: 0 25: Testing Overdetermined Constraints (10600 - 10699). 25: 100%: Checks: 31, Failures: 0 25: Testing SBO Consistency Constraints (10700 - 10799). 25: 100%: Checks: 206, Failures: 0 25: Testing General Notes Consistency Constraints (10800 - 19999). 25: 100%: Checks: 92, Failures: 0 25: Testing Model Consistency Constraints (20000 - 29999). 25: 100%: Checks: 2290, Failures: 0 25: Testing L1 Compatibility Constraints (91000 - 91999). 25: 100%: Checks: 91, Failures: 0 25: Testing L2v1 Compatibility Constraints (92000 - 92999). 25: 100%: Checks: 38, Failures: 0 25: Testing L2v2 Compatibility Constraints (93000 - 93999). 25: 100%: Checks: 23, Failures: 0 25: Testing L2v3 Compatibility Constraints (94000 - 94999). 25: 100%: Checks: 22, Failures: 0 25: Testing L2v4 Compatibility Constraints (95000 - 95999). 25: 100%: Checks: 21, Failures: 0 25: Testing L3v1 Compatibility Constraints (96000 - 96999). 25: 100%: Checks: 31, Failures: 0 25: Testing L1 for New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing L2v1 for New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing L2v2 for New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing L2v3 for New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing L3v1 for New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing New Compatibility Constraints (98000 - 98999). 25: 100%: Checks: 39, Failures: 0 25: Testing Additional SBML Constraints (99100 - 99108). 25: 100%: Checks: 31, Failures: 0 25: Testing Additional SBML Constraints (99129 - 99199). 25: 100%: Checks: 56, Failures: 0 25: Testing Additional Math Constraints (99200 - 99299). 25: 100%: Checks: 144, Failures: 0 25: Testing Additional SBML Constraints (99300 - 99399). 25: 100%: Checks: 10, Failures: 0 25: Testing Additional Annotation Constraints (99400 - 99499). 25: 100%: Checks: 28, Failures: 0 25: Testing Additional Unit Constraints (99127 - 99128). 25: 100%: Checks: 36, Failures: 0 25: Testing Additional Unit Constraints (99500 - 99599). 25: 100%: Checks: 174, Failures: 0 25: Testing Additional SBO Constraints (99700 - 99799). 25: 100%: Checks: 30, Failures: 0 25: Testing Modeling Practice Constraints (80000 - 89999). 25: 100%: Checks: 56, Failures: 0 25/71 Test #25: test_sbml_validator_run ................ Passed 16.72 sec test 26 Start 26: test_sbml_xml_run 26: Test command: /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/sbml/xml/test/test_sbml_xml 26: Test timeout computed to be: 3000 26: Running suite(s): XMLAttributes 26: CopyAndClone 26: XMLNamespaces 26: XMLTriple 26: XMLToken 26: XMLToken_newSetters 26: XMLNode 26: XMLNode_newSetters 26: XMLError 26: XMLErrorC 26: XMLErrorLog 26: XMLInputStream 26: XMLOutputStream 26: 26: XMLAttributesC 26: XMLExceptions 26: 100%: Checks: 129, Failures: 0, Errors: 0 26/71 Test #26: test_sbml_xml_run ...................... Passed 1.65 sec test 27 Start 27: test_csharp_bindings 27: Test command: /usr/bin/mono "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/TestRW.exe" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-2/" "-p" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp" 27: Environment variables: 27: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp: 27: Test timeout computed to be: 3000 27: Testing LibSBML: 5.17.0 27: 27: ........................................................................................................................................................................................................................... 27: All tests passed. 27: 27/71 Test #27: test_csharp_bindings ................... Passed 1.66 sec test 28 Start 28: test_csharp_bindings_full 28: Test command: /usr/bin/mono "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/TestRunner.exe" "-d" "/builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/test-data" "-l" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp/libsbmlcsP.dll" "-w" "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/csharp" "-p" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp" 28: Environment variables: 28: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/csharp: 28: Test timeout computed to be: 3000 28: LibSBML C# Testrunner 28: ===================== 28: Running the tests with: 28: Data Directory: /builddir/build/BUILD/libSBML-5.17.0-Source/src/sbml/test/test-data 28: 28: ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28: ..................................... 28: 28: Total Number of Tests 1830, failures 0 28: 28: All tests passed. 28: 28/71 Test #28: test_csharp_bindings_full .............. Passed 0.09 sec test 29 Start 29: test_java_binding 29: Test command: /usr/bin/java "-Xss8m" "-Djava.library.path=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java" "-cp" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/test" "AutoTestRunner" 29: Environment variables: 29: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java: 29: Test timeout computed to be: 3000 29: .............................................................................................................................................................................................................................................................................................................................................................................................. 29/71 Test #29: test_java_binding ...................... Passed 4.83 sec test 30 Start 30: test_java_printversion 30: Test command: /usr/bin/java "-Xss8m" "-Djava.library.path=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java" "-cp" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/java/test" "TestPrintVersion" "5.17.0" 30: Test timeout computed to be: 3000 30: . 30/71 Test #30: test_java_printversion ................. Passed 0.14 sec test 31 Start 31: test_perl_binding 31: Test command: /usr/bin/perl "-I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl" "-I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl" "-MExtUtils::Command::MM" "-e" "test_harness(0)" "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/*.t" 31: Environment variables: 31: LD_LIBRARY_PATH=/usr/lib/:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/perl/../..: 31: Test timeout computed to be: 3000 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/01__LoadModule.t ................ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/02__CreateDocument.t ............ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/02__ReadFromFile.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/02__ReadFromFileL3.t ............ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/02__WriteToFile.t ............... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/02__WriteToFileL3.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/03__ChangeValues.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/03__DowncastRule.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/03__DowncastSBase.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/03__DowncastSBaseL3.t ........... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/04__ListOf.t .................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/04__ListOfL3.t .................. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__AlgebraicRule.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__AssignmentRule.t ............ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__AssignmentRuleL3.t .......... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__Compartment.t ............... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__CompartmentL3.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__CompartmentVolumeRule.t ..... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__Event.t ..................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__EventAssignment.t ........... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__EventL3.t ................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__Formula.t ................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__FunctionDefinition.t ........ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__KineticLaw.t ................ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__KineticLawL3.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__Model.t ..................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__ModelL3.t ................... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__ModifierSpeciesReference.t .. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__Parameter.t ................. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__ParameterL3.t ............... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__ParameterRule.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__RateRule.t .................. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__SBMLDocument.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/05__SBMLDocumentVerbose.t ....... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/06__TestReadSBML.t .............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/06__TestReadSBMLL3.t ............ ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/06__TestWriteSBML.t ............. ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/06__TestWriteSBMLL3.t ........... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/07__TestCVTerms.t ............... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/07__TestModelHistory.t .......... ok 31: /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok 31: All tests successful. 31: Files=41, Tests=3364, 7 wallclock secs ( 0.23 usr 0.07 sys + 5.16 cusr 0.79 csys = 6.25 CPU) 31: Result: PASS 31/71 Test #31: test_perl_binding ...................... Passed 7.66 sec test 32 Start 32: test_python_binding 32: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/test.py" "-p" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/test" 32: Test timeout computed to be: 3000 32: ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 32: ............................................................................................................................................................................................................................................................................................................................................................................................................... 32: ---------------------------------------------------------------------- 32: Ran 1819 tests in 0.510s 32: 32: OK 32/71 Test #32: test_python_binding .................... Passed 1.75 sec test 33 Start 33: test_python_printversion 33: Test command: /usr/bin/python3 "-c" "import libsbml; assert libsbml.getLibSBMLDottedVersion() == '5.17.0'" "-p" "/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/test" 33: Environment variables: 33: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 33: Test timeout computed to be: 3000 33/71 Test #33: test_python_printversion ............... Passed 0.07 sec test 34 Start 34: test_python_addCVTerms 34: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/addCVTerms.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addCVTerms.out.xml" 34: Environment variables: 34: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 34: Test timeout computed to be: 3000 34/71 Test #34: test_python_addCVTerms ................. Passed 0.09 sec test 35 Start 35: test_python_addingEvidenceCodes_1 35: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/addingEvidenceCodes_1.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_1.out.xml" 35: Environment variables: 35: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 35: Test timeout computed to be: 3000 35/71 Test #35: test_python_addingEvidenceCodes_1 ...... Passed 0.08 sec test 36 Start 36: test_python_addingEvidenceCodes_2 36: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/addingEvidenceCodes_2.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_2.out.xml" 36: Environment variables: 36: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 36: Test timeout computed to be: 3000 36/71 Test #36: test_python_addingEvidenceCodes_2 ...... Passed 0.08 sec test 37 Start 37: test_python_addModelHistory 37: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/addModelHistory.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addModelHistory.out.xml" 37: Environment variables: 37: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 37: Test timeout computed to be: 3000 37: Status for addCreator: succeeded 37: Set created date: succeeded 37: Set modified date: succeeded 37: Set model history: unknown 37/71 Test #37: test_python_addModelHistory ............ Passed 0.07 sec test 38 Start 38: test_python_append_to_note 38: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/append_to_note.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekineticext.xml" "veq" "a new note" "append_to_note.out.xml" 38: Environment variables: 38: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 38: Test timeout computed to be: 3000 38: Body before change: 38: 38:

Some notes

38: 38: 38: Body after change: 38: 38:

Some notes

a new note 38/71 Test #38: test_python_append_to_note ............. Passed 0.08 sec test 39 Start 39: test_python_appendAnnotation 39: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/appendAnnotation.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "appendAnnotation.out.xml" 39: Environment variables: 39: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 39: Test timeout computed to be: 3000 39/71 Test #39: test_python_appendAnnotation ........... Passed 0.08 sec test 40 Start 40: test_python_convertSBML 40: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/convertSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "convertSBML.out.xml" 40: Environment variables: 40: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 40: Test timeout computed to be: 3000 40: Attempting to convert Level 3 Version 1 model to Level 3 Version 2. 40: 40: Conversion completed. 40: 40/71 Test #40: test_python_convertSBML ................ Passed 0.09 sec test 41 Start 41: test_python_createExampleSBML 41: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/createExampleSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createExampleSBMLy.out.xml" 41: Environment variables: 41: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 41: Test timeout computed to be: 3000 41: line 1: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 41: The units of the expression 'f(S1) * compartmentOne / t' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 41: 41: Wrote file 'enzymaticreaction.xml' 41: Wrote file 'units.xml' 41: 41: Notice: encountered 1 validation warning in model 'functionExample'. 41: 41: Wrote file 'functiondef.xml' 41/71 Test #41: test_python_createExampleSBML .......... Passed 0.10 sec test 42 Start 42: test_python_createSimpleModel 42: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/createSimpleModel.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createSimpleModel.out.xml" 42: Environment variables: 42: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 42: Test timeout computed to be: 3000 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: 42: k 42: s1 42: c1 42: 42: 42: 42: 42: 42: 42: 42: 42/71 Test #42: test_python_createSimpleModel .......... Passed 0.08 sec test 43 Start 43: test_python_echoSBML 43: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/echoSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "echoSBML.out.xml" 43: Environment variables: 43: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 43: Test timeout computed to be: 3000 43: [OK] Echoed /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml 43/71 Test #43: test_python_echoSBML ................... Passed 0.08 sec test 44 Start 44: test_python_evaluateCustomMath 44: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/evaluateCustomMath.py" "2*3+4" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 44: Environment variables: 44: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 44: Test timeout computed to be: 3000 44: 2*3+4 = 10.0 44/71 Test #44: test_python_evaluateCustomMath ......... Passed 0.07 sec test 45 Start 45: test_python_getAllElementsWithNotes 45: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/getAllElementsWithNotes.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 45: Environment variables: 45: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 45: Test timeout computed to be: 3000 45: 45: filename: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 45: read time (ms): 1.215576171875 45: searching ......: 45: search time (ms): 0.13037109375 45: elements with notes: 0 45/71 Test #45: test_python_getAllElementsWithNotes .... Passed 0.08 sec test 46 Start 46: test_python_inlineInitialAssignments 46: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/inlineInitialAssignments.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "inlineInitialAssignments.out.xml" 46: Environment variables: 46: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 46: Test timeout computed to be: 3000 46/71 Test #46: test_python_inlineInitialAssignments ... Passed 0.08 sec test 47 Start 47: test_python_printAnnotation 47: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printAnnotation.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 47: Environment variables: 47: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 47: Test timeout computed to be: 3000 47: filename: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 47: 47/71 Test #47: test_python_printAnnotation ............ Passed 0.08 sec test 48 Start 48: test_python_printMath 48: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printMath.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 48: Environment variables: 48: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 48: Test timeout computed to be: 3000 48: 48: Reaction 1, formula: comp * (kon * E * S - koff * ES) 48: 48: Reaction 2, formula: comp * kcat * ES 48: 48: 48: 48/71 Test #48: test_python_printMath .................. Passed 0.08 sec test 49 Start 49: test_python_printRegisteredPackages 49: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printRegisteredPackages.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "printRegisteredPackages.out.xml" 49: Environment variables: 49: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 49: Test timeout computed to be: 3000 49: This version of LibSBML: 5.17.0 includes: 49: 49: comp 49: fbc 49: groups 49: layout 49: render 49: multi 49: qual 49: 49: 49/71 Test #49: test_python_printRegisteredPackages .... Passed 0.07 sec test 50 Start 50: test_python_printSBML 50: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 50: Environment variables: 50: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 50: Test timeout computed to be: 3000 50: 50: File: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml (Level 3, version 1) 50: id: (empty) 50: functionDefinitions: 0 50: unitDefinitions: 2 50: compartmentTypes: 0 50: specieTypes: 0 50: compartments: 1 50: species: 4 50: parameters: 0 50: initialAssignments: 0 50: rules: 0 50: constraints: 0 50: reactions: 2 50: events: 0 50: 50: 50/71 Test #50: test_python_printSBML .................. Passed 0.07 sec test 51 Start 51: test_python_printsupported 51: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printsupported.py" 51: Environment variables: 51: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 51: Test timeout computed to be: 3000 51: Supported by LibSBML 5.17.0 51: 51: SBML Level: 1 Version: 1 51: SBML Level: 1 Version: 2 51: SBML Level: 2 Version: 1 51: SBML Level: 2 Version: 2 51: SBML Level: 2 Version: 3 51: SBML Level: 2 Version: 4 51: SBML Level: 2 Version: 5 51: SBML Level: 3 Version: 1 51: SBML Level: 3 Version: 2 51: 51/71 Test #51: test_python_printsupported ............. Passed 0.07 sec test 52 Start 52: test_python_printUnits 52: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/printUnits.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 52: Environment variables: 52: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 52: Test timeout computed to be: 3000 52: Species 0: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 52: Species 1: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 52: Species 2: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 52: Species 3: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 52: Compartment 0: litre (exponent = 1, multiplier = 1, scale = 0) 52: Reaction 0: 52: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 52: undeclared units: no 52: Reaction 1: 52: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 52: undeclared units: no 52/71 Test #52: test_python_printUnits ................. Passed 0.08 sec test 53 Start 53: test_python_promoteParameters 53: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/promoteParameters.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "promoteParameters.out.xml" 53: Environment variables: 53: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 53: Test timeout computed to be: 3000 53: [OK] wrote promoteParameters.out.xml 53/71 Test #53: test_python_promoteParameters .......... Passed 0.08 sec test 54 Start 54: test_python_readSBML 54: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/readSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 54: Environment variables: 54: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 54: Test timeout computed to be: 3000 54: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/readSBML.py:57: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead 54: current = time.clock() 54: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/readSBML.py:65: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead 54: print(" read time (ms): " + str(time.clock() - current)) 54: 54: filename: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 54: file size: 3930 54: read time (ms): 0.0014749999999999902 54: validation error(s): 0 54: 54/71 Test #54: test_python_readSBML ................... Passed 0.09 sec test 55 Start 55: test_python_replaceOneFD 55: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/replaceOneFD.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/functiondef.xml" "f" "reaction_1" "replaceOneFD.out.xml" 55: Environment variables: 55: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 55: Test timeout computed to be: 3000 55/71 Test #55: test_python_replaceOneFD ............... Passed 0.07 sec test 56 Start 56: test_python_setIdFromNames 56: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/setIdFromNames.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setIdFromNames.out.xml" 56: Environment variables: 56: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 56: Test timeout computed to be: 3000 56: 56: filename: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 56: read time (ms): 1.081787109375 56: rename time (ms): 0.16357421875 56: write time (ms): 0.487060546875 56: 56/71 Test #56: test_python_setIdFromNames ............. Passed 0.08 sec test 57 Start 57: test_python_unsetAnnotation 57: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/unsetAnnotation.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetAnnotation.out.xml" 57: Environment variables: 57: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 57: Test timeout computed to be: 3000 57/71 Test #57: test_python_unsetAnnotation ............ Passed 0.07 sec test 58 Start 58: test_python_unsetNotes 58: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/unsetNotes.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetNotes.out.xml" 58: Environment variables: 58: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 58: Test timeout computed to be: 3000 58/71 Test #58: test_python_unsetNotes ................. Passed 0.09 sec test 59 Start 59: test_python_validateSBML 59: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/validateSBML.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 59: Environment variables: 59: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 59: Test timeout computed to be: 3000 59: --------------------------------------------------------------------------- 59: filename : /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 59: file size (byte) : 3930 59: read time (ms) : 1.173973 59: c-check time (ms) : 3.493786 59: validation error(s) : 0 59: (consistency error(s)): 0 59: validation warning(s) : 0 59: (consistency warning(s)): 0 59: --------------------------------------------------------------------------- 59: Validated 1 files, 1 valid files, 0 invalid files 59/71 Test #59: test_python_validateSBML ............... Passed 0.08 sec test 60 Start 60: test_python_stringInput 60: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/stringInput.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 60: Environment variables: 60: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 60: Test timeout computed to be: 3000 60: filename: /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 60: 60: 60: 60/71 Test #60: test_python_stringInput ................ Passed 0.07 sec test 61 Start 61: test_python_stripPackage 61: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/stripPackage.py" "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/fbc/fbc_example1.xml" "fbc" "stripPackage.out.xml" 61: Environment variables: 61: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 61: Test timeout computed to be: 3000 61: [OK] stripped package 'fbc' from /builddir/build/BUILD/libSBML-5.17.0-Source/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml 61/71 Test #61: test_python_stripPackage ............... Passed 0.10 sec test 62 Start 62: test_python_fbc_fbc_example1 62: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/fbc/fbc_example1.py" 62: Environment variables: 62: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 62: Test timeout computed to be: 3000 62/71 Test #62: test_python_fbc_fbc_example1 ........... Passed 0.07 sec test 63 Start 63: test_python_groups_groups_example1 63: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/groups/groups_example1.py" 63: Environment variables: 63: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 63: Test timeout computed to be: 3000 63/71 Test #63: test_python_groups_groups_example1 ..... Passed 0.07 sec test 64 Start 64: test_python_layout_example1_L3 64: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/layout/example1-L3.py" 64: Environment variables: 64: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 64: Test timeout computed to be: 3000 64/71 Test #64: test_python_layout_example1_L3 ......... Passed 0.07 sec test 65 Start 65: test_python_layout_example1 65: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/layout/example1.py" 65: Environment variables: 65: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 65: Test timeout computed to be: 3000 65/71 Test #65: test_python_layout_example1 ............ Passed 0.08 sec test 66 Start 66: test_python_multi_multi_example1 66: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/multi/multi_example1.py" 66: Environment variables: 66: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 66: Test timeout computed to be: 3000 66/71 Test #66: test_python_multi_multi_example1 ....... Passed 0.07 sec test 67 Start 67: test_python_multi_multi_example2 67: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/multi/multi_example2.py" 67: Environment variables: 67: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 67: Test timeout computed to be: 3000 67/71 Test #67: test_python_multi_multi_example2 ....... Passed 0.08 sec test 68 Start 68: test_python_multi_multi_example3 68: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/multi/multi_example3.py" 68: Environment variables: 68: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 68: Test timeout computed to be: 3000 68/71 Test #68: test_python_multi_multi_example3 ....... Passed 0.07 sec test 69 Start 69: test_python_multi_printMulti 69: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/multi/printMulti.py" 69: Environment variables: 69: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 69: Test timeout computed to be: 3000 69: usage: printMulti sbml-file 69/71 Test #69: test_python_multi_printMulti ........... Passed 0.08 sec test 70 Start 70: test_python_qual_qual_example1 70: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.17.0-Source/examples/python/qual/qual_example1.py" 70: Environment variables: 70: PYTHONPATH=/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python: 70: Test timeout computed to be: 3000 70/71 Test #70: test_python_qual_qual_example1 ......... Passed 0.08 sec test 71 Start 71: test_r_binding 71: Test command: /usr/bin/R "--slave" "-e" ".libPaths('temp');library(libSBML);cat(getLibSBMLDottedVersion() == '5.17.0')" 71: Test timeout computed to be: 3000 71: 71: Attaching package: 'libSBML' 71: 71: The following object is masked from 'package:base': 71: 71: flush 71: 71: TRUE 71/71 Test #71: test_r_binding ......................... Passed 1.26 sec The following tests passed: test_comp_extensions_run test_comp_sbase_run test_comp_util_run test_comp_validator_run test_sbml_package_fbc_run test_fbc_validator_run test_extension_package_groups_run test_groups_validator_run test_sbml_package_layout_run test_layout_validator_run test_sbml_package_multi_run test_multi_validator_run test_extension_package_qual_run test_sbml_package_qual_run test_qual_validator_run test_sbml_package_render_run test_render_validator_run test_sbml_annotation_run test_sbml_conversion_run test_sbml_extension_run test_sbml_math_run test_sbml_sbml_run test_sbml_units_run test_sbml_util_run test_sbml_validator_run test_sbml_xml_run test_csharp_bindings test_csharp_bindings_full test_java_binding test_java_printversion test_perl_binding test_python_binding test_python_printversion test_python_addCVTerms test_python_addingEvidenceCodes_1 test_python_addingEvidenceCodes_2 test_python_addModelHistory test_python_append_to_note test_python_appendAnnotation test_python_convertSBML test_python_createExampleSBML test_python_createSimpleModel test_python_echoSBML test_python_evaluateCustomMath test_python_getAllElementsWithNotes test_python_inlineInitialAssignments test_python_printAnnotation test_python_printMath test_python_printRegisteredPackages test_python_printSBML test_python_printsupported test_python_printUnits test_python_promoteParameters test_python_readSBML test_python_replaceOneFD test_python_setIdFromNames test_python_unsetAnnotation test_python_unsetNotes test_python_validateSBML test_python_stringInput test_python_stripPackage test_python_fbc_fbc_example1 test_python_groups_groups_example1 test_python_layout_example1_L3 test_python_layout_example1 test_python_multi_multi_example1 test_python_multi_multi_example2 test_python_multi_multi_example3 test_python_multi_printMulti test_python_qual_qual_example1 test_r_binding 100% tests passed, 0 tests failed out of 71 Total Test time (real) = 96.58 sec + popd + exit 0 ~/build/BUILD/libSBML-5.17.0-Source Processing files: libsbml-5.17.0-11.fc30.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tbRtHx + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + DOCDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + cp -pr AUTHORS.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + cp -pr README-extension.txt README.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + cp -pr NEWS.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + cp -pr OLD_NEWS.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/doc/libsbml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.qEPMyT + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: libsbml = 5.17.0-11.fc30 libsbml(x86-64) = 5.17.0-11.fc30 libsbml.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-devel-5.17.0-11.fc30.x86_64 Provides: libsbml-devel = 5.17.0-11.fc30 libsbml-devel(x86-64) = 5.17.0-11.fc30 libsbml-static = 5.17.0-11.fc30 pkgconfig(libsbml) = 5.17.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22 Processing files: python3-libsbml-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.CbGU1j + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: python3-libsbml = 5.17.0-11.fc30 python3-libsbml(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.7 rtld(GNU_HASH) Processing files: perl-LibSBML-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zlqZeL + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: perl(LibSBML) perl(LibSBML::ASTBase) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::MathML) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.17.0-11.fc30 perl-LibSBML(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libperl.so.5.28()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) rtld(GNU_HASH) Processing files: ruby-SBML-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.EkP6Fd + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: libSBML.so()(64bit) ruby(SBML) = 5.17.0 ruby-SBML = 5.17.0-11.fc30 ruby-SBML(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libruby.so.2.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: java-libsbml-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.PUgNpG + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: java-libsbml = 5.17.0-11.fc30 java-libsbml(x86-64) = 5.17.0-11.fc30 libsbmlj.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-libSBML-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.6qTaz9 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: R-libSBML = 5.17.0-11.fc30 R-libSBML(x86-64) = 5.17.0-11.fc30 libSBML.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-sharp-5.17.0-11.fc30.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.IHkYdD + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64/usr/share/licenses/libsbml + exit 0 Provides: libsbml-sharp = 5.17.0-11.fc30 libsbml-sharp(x86-64) = 5.17.0-11.fc30 libsbmlcs.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-debugsource-5.17.0-11.fc30.x86_64 Provides: libsbml-debugsource = 5.17.0-11.fc30 libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsbml-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = 10b9758a0f6f939ed6f94366dccc51e81996da95 libsbml-debuginfo = 5.17.0-11.fc30 libsbml-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: python3-libsbml-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = 2a580c72c8513d9b0652d2d8a157a48c07c03074 python3-libsbml-debuginfo = 5.17.0-11.fc30 python3-libsbml-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: perl-LibSBML-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = 29c5a8122a31e5731e8364ed56f48978ba73a38b perl-LibSBML-debuginfo = 5.17.0-11.fc30 perl-LibSBML-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: ruby-SBML-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = 81beb559e9803a1c17a1d2d4b76d5893e8e34c57 ruby-SBML-debuginfo = 5.17.0-11.fc30 ruby-SBML-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: java-libsbml-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = 433805322542815cc17e638264ad42226f0a7766 java-libsbml-debuginfo = 5.17.0-11.fc30 java-libsbml-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: R-libSBML-debuginfo-5.17.0-11.fc30.x86_64 Provides: R-libSBML-debuginfo = 5.17.0-11.fc30 R-libSBML-debuginfo(x86-64) = 5.17.0-11.fc30 debuginfo(build-id) = a0a815c49084bbec3586054c2c3d947dc9e5448e Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Processing files: libsbml-sharp-debuginfo-5.17.0-11.fc30.x86_64 Provides: debuginfo(build-id) = b93c2ca94307b996bd2559fd75e706a22b2b960f libsbml-sharp-debuginfo = 5.17.0-11.fc30 libsbml-sharp-debuginfo(x86-64) = 5.17.0-11.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.17.0-11.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 Wrote: /builddir/build/RPMS/libsbml-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-devel-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/java-libsbml-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-sharp-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debugsource-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/java-libsbml-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-debuginfo-5.17.0-11.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-sharp-debuginfo-5.17.0-11.fc30.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.6lexkq + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.17.0-Source + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsbml-5.17.0-11.fc30.x86_64 + exit 0 Child return code was: 0