Warning: Permanently added '172.25.85.79' (ECDSA) to the list of known hosts. Cloning into 'moose'... Note: checking out '333c92c9defe42205c9510b584268538ecfa2d01'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 333c92c... import_srpm % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6857k 100 6857k 0 0 24.4M 0 --:--:-- --:--:-- --:--:-- 24.5M moose-0e12e41.tar.gz: OK WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(moose.spec) Config(579096-fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/579096-fedora-rawhide-x86_64/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Start: dnf install "Copr repository" 0% [ ] --- B/s | 0 B --:-- ETA "Copr repository" 4.1 MB/s | 238 kB 00:00 fedora 0% [ ] --- B/s | 0 B --:-- ETA fedora 17% [===- ] 33 MB/s | 9.9 MB 00:01 ETA fedora 40% [======== ] 33 MB/s | 23 MB 00:00 ETA fedora 58% [===========- ] 33 MB/s | 33 MB 00:00 ETA fedora 77% [===============- ] 34 MB/s | 44 MB 00:00 ETA fedora 98% [===================-] 34 MB/s | 55 MB 00:00 ETA fedora 33 MB/s | 56 MB 00:01 Last metadata expiration check: 0:00:00 ago on Fri 14 Jul 2017 05:29:31 AM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group rpm-build coreutils make tar which sed info gawk findutils patch bzip2 grep util-linux xz unzip gcc cpio gzip diffutils fedora-release redhat-rpm-config bash shadow-utils gcc-c++ ================================================================================ Package Arch Version Repository Size ================================================================================ Installing dependencies: audit-libs x86_64 2.7.7-1.fc27 fedora 107 k basesystem noarch 11-3.fc26 fedora 8.8 k bash x86_64 4.4.12-6.fc27 fedora 1.5 M binutils x86_64 2.28-9.fc27 fedora 5.6 M bzip2 x86_64 1.0.6-22.fc26 fedora 57 k bzip2-libs x86_64 1.0.6-22.fc26 fedora 45 k ca-certificates noarch 2017.2.14-2.fc27 fedora 478 k chkconfig x86_64 1.10-1.fc27 fedora 185 k coreutils x86_64 8.27-10.fc27 fedora 1.1 M coreutils-common x86_64 8.27-10.fc27 fedora 1.9 M cpio x86_64 2.12-4.fc26 fedora 261 k cpp x86_64 7.1.1-5.fc27 fedora 9.1 M cracklib x86_64 2.9.6-5.fc26 fedora 85 k crypto-policies noarch 20170606-1.git7c32281.fc27 fedora 35 k curl x86_64 7.54.1-2.fc27 fedora 308 k cyrus-sasl-lib x86_64 2.1.26-32.fc27 fedora 160 k diffutils x86_64 3.6-1.fc27 fedora 352 k dwz x86_64 0.12-3.fc26 fedora 105 k elfutils x86_64 0.169-3.fc27 fedora 303 k elfutils-default-yama-scope noarch 0.169-3.fc27 fedora 38 k elfutils-libelf x86_64 0.169-3.fc27 fedora 200 k elfutils-libs x86_64 0.169-3.fc27 fedora 279 k expat x86_64 2.2.1-2.fc27 fedora 94 k fedora-release noarch 27-0.2 fedora 25 k fedora-repos noarch 27-0.2 fedora 92 k fedora-repos-rawhide noarch 27-0.2 fedora 7.4 k fedora-rpm-macros noarch 26-2.fc26 fedora 6.5 k file x86_64 5.31-1.fc27 fedora 70 k file-libs x86_64 5.31-1.fc27 fedora 507 k filesystem x86_64 3.3-1.fc27 fedora 1.1 M findutils x86_64 1:4.6.0-12.fc27 fedora 520 k fpc-srpm-macros noarch 1.1-2.fc26 fedora 7.0 k gawk x86_64 4.1.4-3.fc26 fedora 1.1 M gc x86_64 7.6.0-4.fc27 fedora 109 k gcc x86_64 7.1.1-5.fc27 fedora 21 M gcc-c++ x86_64 7.1.1-5.fc27 fedora 11 M gdb-headless x86_64 8.0-17.fc27 fedora 3.3 M gdbm x86_64 1.13-1.fc27 fedora 155 k ghc-srpm-macros noarch 1.4.2-5.fc26 fedora 7.7 k glib2 x86_64 2.53.3-1.fc27 fedora 2.4 M glibc x86_64 2.25.90-22.fc27 fedora 3.6 M glibc-all-langpacks x86_64 2.25.90-22.fc27 fedora 7.0 M glibc-common x86_64 2.25.90-22.fc27 fedora 865 k glibc-devel x86_64 2.25.90-22.fc27 fedora 1.0 M glibc-headers x86_64 2.25.90-22.fc27 fedora 518 k gmp x86_64 1:6.1.2-4.fc27 fedora 279 k gnat-srpm-macros noarch 4-2.fc26 fedora 8.1 k gnupg2 x86_64 2.1.21-2.fc27 fedora 2.2 M gnutls x86_64 3.5.14-1.fc27 fedora 755 k go-srpm-macros noarch 2-9.fc27 fedora 7.9 k grep x86_64 3.1-1.fc27 fedora 269 k guile x86_64 5:2.0.14-1.fc26 fedora 3.5 M gzip x86_64 1.8-2.fc26 fedora 158 k info x86_64 6.4-2.fc27 fedora 191 k isl x86_64 0.16.1-1.fc26 fedora 821 k kernel-headers x86_64 4.13.0-0.rc0.git5.1.fc27 fedora 1.2 M keyutils-libs x86_64 1.5.10-1.fc27 fedora 31 k krb5-libs x86_64 1.15.1-14.fc27 fedora 750 k libacl x86_64 2.2.52-15.fc27 fedora 32 k libarchive x86_64 3.3.1-1.fc27 fedora 352 k libassuan x86_64 2.4.3-2.fc26 fedora 75 k libatomic_ops x86_64 7.4.6-1.fc27 fedora 33 k libattr x86_64 2.4.47-18.fc26 fedora 23 k libbabeltrace x86_64 1.5.2-2.fc27 fedora 190 k libblkid x86_64 2.30-1.fc27 fedora 194 k libcap x86_64 2.25-5.fc26 fedora 51 k libcap-ng x86_64 0.7.8-3.fc26 fedora 29 k libcom_err x86_64 1.43.4-2.fc26 fedora 44 k libcrypt-nss x86_64 2.25.90-22.fc27 fedora 58 k libcurl x86_64 7.54.1-2.fc27 fedora 268 k libdb x86_64 5.3.28-24.fc27 fedora 752 k libdb-utils x86_64 5.3.28-24.fc27 fedora 142 k libfdisk x86_64 2.30-1.fc27 fedora 241 k libffi x86_64 3.1-12.fc27 fedora 34 k libgcc x86_64 7.1.1-5.fc27 fedora 87 k libgcrypt x86_64 1.7.8-1.fc27 fedora 435 k libgomp x86_64 7.1.1-5.fc27 fedora 195 k libgpg-error x86_64 1.27-1.fc27 fedora 182 k libidn2 x86_64 2.0.2-1.fc27 fedora 95 k libipt x86_64 1.6.1-2.fc27 fedora 47 k libksba x86_64 1.3.5-3.fc26 fedora 131 k libmetalink x86_64 0.1.3-2.fc26 fedora 28 k libmount x86_64 2.30-1.fc27 fedora 216 k libmpc x86_64 1.0.2-6.fc26 fedora 55 k libnghttp2 x86_64 1.24.0-1.fc27 fedora 72 k libpkgconf x86_64 1.3.7-1.fc27 fedora 30 k libpsl x86_64 0.17.0-2.fc26 fedora 48 k libpwquality x86_64 1.4.0-1.fc27 fedora 99 k libselinux x86_64 2.6-6.fc27 fedora 170 k libsemanage x86_64 2.6-4.fc27 fedora 152 k libsepol x86_64 2.6-1.fc26 fedora 295 k libsigsegv x86_64 2.11-1.fc26 fedora 28 k libsmartcols x86_64 2.30-1.fc27 fedora 157 k libssh2 x86_64 1.8.0-2.fc26 fedora 94 k libstdc++ x86_64 7.1.1-5.fc27 fedora 459 k libstdc++-devel x86_64 7.1.1-5.fc27 fedora 1.9 M libtasn1 x86_64 4.12-1.fc27 fedora 73 k libtool-ltdl x86_64 2.4.6-18.fc27 fedora 55 k libunistring x86_64 0.9.7-1.fc26 fedora 408 k libusbx x86_64 1.0.21-2.fc26 fedora 66 k libutempter x86_64 1.1.6-9.fc26 fedora 29 k libuuid x86_64 2.30-1.fc27 fedora 81 k libverto x86_64 0.2.6-7.fc26 fedora 20 k libxml2 x86_64 2.9.4-2.fc26 fedora 690 k lua-libs x86_64 5.3.4-3.fc27 fedora 114 k lz4-libs x86_64 1.7.5-4.fc27 fedora 47 k make x86_64 1:4.2.1-2.fc26 fedora 492 k mpfr x86_64 3.1.5-3.fc27 fedora 215 k ncurses x86_64 6.0-10.20170520.fc27 fedora 365 k ncurses-base noarch 6.0-10.20170520.fc27 fedora 77 k ncurses-libs x86_64 6.0-10.20170520.fc27 fedora 318 k nettle x86_64 3.3-2.fc26 fedora 305 k npth x86_64 1.5-1.fc27 fedora 24 k nspr x86_64 4.15.0-1.fc27 fedora 138 k nss x86_64 3.31.0-2.fc27 fedora 864 k nss-pem x86_64 1.0.3-3.fc27 fedora 76 k nss-softokn x86_64 3.31.0-2.fc27 fedora 387 k nss-softokn-freebl x86_64 3.31.0-2.fc27 fedora 226 k nss-sysinit x86_64 3.31.0-2.fc27 fedora 62 k nss-util x86_64 3.31.0-2.fc27 fedora 87 k ocaml-srpm-macros noarch 4-2.fc26 fedora 7.5 k openblas-srpm-macros noarch 2-1.fc27 fedora 6.5 k openldap x86_64 2.4.45-1.fc27 fedora 354 k openssl-libs x86_64 1:1.1.0f-5.fc27 fedora 1.3 M p11-kit x86_64 0.23.7-1.fc27 fedora 261 k p11-kit-trust x86_64 0.23.7-1.fc27 fedora 131 k pam x86_64 1.3.0-3.fc27 fedora 742 k patch x86_64 2.7.5-4.fc26 fedora 122 k pcre x86_64 8.41-1.fc27 fedora 204 k perl-srpm-macros noarch 1-23.fc27 fedora 9.2 k pkgconf x86_64 1.3.7-1.fc27 fedora 30 k pkgconf-m4 noarch 1.3.7-1.fc27 fedora 13 k pkgconf-pkg-config x86_64 1.3.7-1.fc27 fedora 12 k popt x86_64 1.16-8.fc26 fedora 58 k publicsuffix-list-dafsa noarch 20170424-1.fc27 fedora 44 k python-srpm-macros noarch 3-20.fc27 fedora 9.2 k qt5-srpm-macros noarch 5.9.0-2.fc27 fedora 8.3 k readline x86_64 7.0-5.fc26 fedora 215 k redhat-rpm-config noarch 64-1.fc27 fedora 61 k rpm x86_64 4.13.0.1-31.fc27 fedora 524 k rpm-build x86_64 4.13.0.1-31.fc27 fedora 153 k rpm-build-libs x86_64 4.13.0.1-31.fc27 fedora 131 k rpm-libs x86_64 4.13.0.1-31.fc27 fedora 309 k rpm-plugin-selinux x86_64 4.13.0.1-31.fc27 fedora 61 k sed x86_64 4.4-1.fc26 fedora 286 k setup noarch 2.10.5-2.fc26 fedora 174 k shadow-utils x86_64 2:4.3.1-3.fc26 fedora 1.2 M sqlite-libs x86_64 3.19.3-1.fc27 fedora 467 k system-python-libs x86_64 3.6.1-10.fc27 fedora 6.3 M systemd-libs x86_64 233-6.fc27 fedora 456 k tar x86_64 2:1.29-4.fc26 fedora 813 k tzdata noarch 2017b-1.fc27 fedora 420 k unzip x86_64 6.0-33.fc26 fedora 187 k ustr x86_64 1.0.4-22.fc26 fedora 100 k util-linux x86_64 2.30-1.fc27 fedora 2.4 M which x86_64 2.21-2.fc26 fedora 45 k xz x86_64 5.2.3-2.fc26 fedora 148 k xz-libs x86_64 5.2.3-2.fc26 fedora 90 k zip x86_64 3.0-18.fc26 fedora 269 k zlib x86_64 1.2.11-2.fc26 fedora 98 k Transaction Summary ================================================================================ Install 160 Packages Total download size: 117 M Installed size: 450 M Downloading Packages: (1/160): shadow-util 0% [ ] --- B/s | 0 B --:-- ETA (1/160): make-4.2.1-2.fc26.x86_64.rpm 4.4 MB/s | 492 kB 00:00 (2-3/160): shadow-ut 0% [ ] 4.4 MB/s | 492 kB 00:26 ETA (2/160): diffutils-3.6-1.fc27.x86_64.rpm 2.6 MB/s | 352 kB 00:00 (3-4/160): shadow-ut 0% [ ] 4.4 MB/s | 957 kB 00:26 ETA (3/160): fedora-release-27-0.2.noarch.rpm 720 kB/s | 25 kB 00:00 (4-5/160): shadow-ut 0% [ ] 4.5 MB/s | 1.1 MB 00:26 ETA (4/160): sed-4.4-1.fc26.x86_64.rpm 8.1 MB/s | 286 kB 00:00 (5-6/160): shadow-ut 1% [ ] 4.6 MB/s | 1.8 MB 00:25 ETA (5/160): rpm-build-4.13.0.1-31.fc27.x86_64.rpm 3.4 MB/s | 153 kB 00:00 (6-7/160): shadow-ut 2% [ ] 4.7 MB/s | 2.4 MB 00:24 ETA (6/160): shadow-utils-4.3.1-3.fc26.x86_64.rpm 5.6 MB/s | 1.2 MB 00:00 (7-8/160): which-2.2 2% [ ] 4.7 MB/s | 2.5 MB 00:24 ETA (7/160): patch-2.7.5-4.fc26.x86_64.rpm 4.6 MB/s | 122 kB 00:00 (8-9/160): which-2.2 2% [ ] 4.7 MB/s | 2.6 MB 00:24 ETA (8/160): which-2.21-2.fc26.x86_64.rpm 874 kB/s | 45 kB 00:00 (9-10/160): info-6.4 2% [ ] 4.7 MB/s | 2.6 MB 00:24 ETA (9/160): info-6.4-2.fc27.x86_64.rpm 2.8 MB/s | 191 kB 00:00 (10-11/160): xz-5.2. 2% [ ] 4.7 MB/s | 2.8 MB 00:24 ETA (10/160): xz-5.2.3-2.fc26.x86_64.rpm 2.2 MB/s | 148 kB 00:00 (11-12/160): gzip-1. 2% [- ] 4.7 MB/s | 3.0 MB 00:24 ETA (11/160): gzip-1.8-2.fc26.x86_64.rpm 2.2 MB/s | 158 kB 00:00 (12-13/160): bash-4. 2% [- ] 4.7 MB/s | 3.1 MB 00:24 ETA (12/160): redhat-rpm-config-64-1.fc27.noarch.rp 3.7 MB/s | 61 kB 00:00 (13-14/160): bash-4. 2% [- ] 4.7 MB/s | 3.2 MB 00:24 ETA (13/160): findutils-4.6.0-12.fc27.x86_64.rpm 9.6 MB/s | 520 kB 00:00 (14-15/160): grep-3. 4% [- ] 5.0 MB/s | 4.9 MB 00:22 ETA (14/160): bash-4.4.12-6.fc27.x86_64.rpm 17 MB/s | 1.5 MB 00:00 (15-16/160): tar-1.2 4% [- ] 5.1 MB/s | 5.5 MB 00:21 ETA (15/160): grep-3.1-1.fc27.x86_64.rpm 3.8 MB/s | 269 kB 00:00 (16-17/160): cpio-2. 4% [- ] 5.1 MB/s | 5.5 MB 00:21 ETA (16/160): tar-1.29-4.fc26.x86_64.rpm 17 MB/s | 813 kB 00:00 (17-18/160): coreuti 5% [= ] 5.2 MB/s | 6.3 MB 00:21 ETA (17/160): cpio-2.12-4.fc26.x86_64.rpm 5.3 MB/s | 261 kB 00:00 (18-19/160): bzip2-1 5% [= ] 5.3 MB/s | 6.6 MB 00:20 ETA (18/160): coreutils-8.27-10.fc27.x86_64.rpm 9.8 MB/s | 1.1 MB 00:00 (19-20/160): audit-l 6% [= ] 5.4 MB/s | 7.7 MB 00:20 ETA (19/160): bzip2-1.0.6-22.fc26.x86_64.rpm 567 kB/s | 57 kB 00:00 (20-21/160): glibc-2 6% [= ] 5.4 MB/s | 7.7 MB 00:20 ETA (20/160): audit-libs-2.7.7-1.fc27.x86_64.rpm 936 kB/s | 107 kB 00:00 (21-22/160): libacl- 6% [= ] 5.4 MB/s | 7.8 MB 00:20 ETA (21/160): glibc-2.25.90-22.fc27.x86_64.rpm 21 MB/s | 3.6 MB 00:00 (22-23/160): libattr 9% [=- ] 6.0 MB/s | 11 MB 00:17 ETA (22/160): libattr-2.4.47-18.fc26.x86_64.rpm 186 kB/s | 23 kB 00:00 (23-24/160): libseli 9% [=- ] 6.0 MB/s | 11 MB 00:17 ETA (23/160): libacl-2.2.52-15.fc27.x86_64.rpm 198 kB/s | 32 kB 00:00 (24-25/160): libsema 9% [=- ] 6.0 MB/s | 11 MB 00:17 ETA (24/160): libsemanage-2.6-4.fc27.x86_64.rpm 6.0 MB/s | 152 kB 00:00 (25-26/160): setup-2 9% [=- ] 6.0 MB/s | 12 MB 00:17 ETA (25/160): libselinux-2.6-6.fc27.x86_64.rpm 4.9 MB/s | 170 kB 00:00 (26-27/160): gc-7.6. 10% [== ] 6.0 MB/s | 12 MB 00:17 ETA (26/160): setup-2.10.5-2.fc26.noarch.rpm 3.8 MB/s | 174 kB 00:00 (27-28/160): guile-2 10% [== ] 6.0 MB/s | 12 MB 00:17 ETA (27/160): gc-7.6.0-4.fc27.x86_64.rpm 2.7 MB/s | 109 kB 00:00 (28-29/160): fedora- 10% [== ] 6.2 MB/s | 13 MB 00:16 ETA (28/160): fedora-repos-27-0.2.noarch.rpm 860 kB/s | 92 kB 00:00 (29-30/160): binutil 13% [==- ] 6.7 MB/s | 16 MB 00:15 ETA (29/160): guile-2.0.14-1.fc26.x86_64.rpm 25 MB/s | 3.5 MB 00:00 (30-31/160): bzip2-l 13% [==- ] 6.7 MB/s | 16 MB 00:15 ETA (30/160): bzip2-libs-1.0.6-22.fc26.x86_64.rpm 188 kB/s | 45 kB 00:00 (31-32/160): elfutil 17% [=== ] 7.3 MB/s | 20 MB 00:13 ETA (31/160): elfutils-0.169-3.fc27.x86_64.rpm 1.3 MB/s | 303 kB 00:00 (32-33/160): elfutil 17% [=== ] 7.3 MB/s | 20 MB 00:13 ETA (32/160): binutils-2.28-9.fc27.x86_64.rpm 14 MB/s | 5.6 MB 00:00 (33-34/160): elfutil 18% [===- ] 7.5 MB/s | 22 MB 00:12 ETA (33/160): elfutils-libs-0.169-3.fc27.x86_64.rpm 3.8 MB/s | 279 kB 00:00 (34-35/160): file-5. 18% [===- ] 7.5 MB/s | 22 MB 00:12 ETA (34/160): elfutils-libelf-0.169-3.fc27.x86_64.r 2.2 MB/s | 200 kB 00:00 (35-36/160): file-li 18% [===- ] 7.5 MB/s | 22 MB 00:12 ETA (35/160): file-5.31-1.fc27.x86_64.rpm 2.6 MB/s | 70 kB 00:00 (36-37/160): gdb-hea 19% [===- ] 7.6 MB/s | 22 MB 00:12 ETA (36/160): file-libs-5.31-1.fc27.x86_64.rpm 16 MB/s | 507 kB 00:00 (37-38/160): libcap- 19% [===- ] 7.6 MB/s | 23 MB 00:12 ETA (37/160): libcap-2.25-5.fc26.x86_64.rpm 682 kB/s | 51 kB 00:00 (38-39/160): libdb-5 21% [==== ] 7.9 MB/s | 25 MB 00:11 ETA (38/160): libdb-5.3.28-24.fc27.x86_64.rpm 8.2 MB/s | 752 kB 00:00 (39-40/160): lua-lib 21% [==== ] 8.0 MB/s | 26 MB 00:11 ETA (39/160): lua-libs-5.3.4-3.fc27.x86_64.rpm 5.0 MB/s | 114 kB 00:00 (40-41/160): openssl 21% [==== ] 8.0 MB/s | 26 MB 00:11 ETA (40/160): popt-1.16-8.fc26.x86_64.rpm 2.2 MB/s | 58 kB 00:00 (41-42/160): openssl 22% [====- ] 8.2 MB/s | 27 MB 00:11 ETA (41/160): gdb-headless-8.0-17.fc27.x86_64.rpm 18 MB/s | 3.3 MB 00:00 (42-43/160): rpm-4.1 23% [====- ] 8.4 MB/s | 28 MB 00:10 ETA (42/160): openssl-libs-1.1.0f-5.fc27.x86_64.rpm 13 MB/s | 1.3 MB 00:00 (43-44/160): rpm-4.1 24% [====- ] 8.4 MB/s | 28 MB 00:10 ETA (43/160): rpm-build-libs-4.13.0.1-31.fc27.x86_6 5.5 MB/s | 131 kB 00:00 (44-45/160): rpm-4.1 24% [====- ] 8.5 MB/s | 29 MB 00:10 ETA (44/160): rpm-4.13.0.1-31.fc27.x86_64.rpm 5.3 MB/s | 524 kB 00:00 (45-46/160): rpm-lib 24% [====- ] 8.5 MB/s | 29 MB 00:10 ETA (45/160): xz-libs-5.2.3-2.fc26.x86_64.rpm 3.1 MB/s | 90 kB 00:00 (46-47/160): rpm-lib 24% [====- ] 8.5 MB/s | 29 MB 00:10 ETA (46/160): rpm-libs-4.13.0.1-31.fc27.x86_64.rpm 6.7 MB/s | 309 kB 00:00 (47-48/160): zlib-1. 24% [====- ] 8.5 MB/s | 29 MB 00:10 ETA (47/160): zlib-1.2.11-2.fc26.x86_64.rpm 4.0 MB/s | 98 kB 00:00 (48-49/160): ncurses 25% [===== ] 8.5 MB/s | 29 MB 00:10 ETA (48/160): ncurses-libs-6.0-10.20170520.fc27.x86 8.3 MB/s | 318 kB 00:00 (49-50/160): filesys 25% [===== ] 8.5 MB/s | 30 MB 00:10 ETA (49/160): fedora-rpm-macros-26-2.fc26.noarch.rp 217 kB/s | 6.5 kB 00:00 (50-51/160): filesys 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (50/160): filesystem-3.3-1.fc27.x86_64.rpm 17 MB/s | 1.1 MB 00:00 (51-52/160): dwz-0.1 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (51/160): dwz-0.12-3.fc26.x86_64.rpm 1.8 MB/s | 105 kB 00:00 (52-53/160): fpc-srp 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (52/160): fpc-srpm-macros-1.1-2.fc26.noarch.rpm 960 kB/s | 7.0 kB 00:00 (53-54/160): ghc-srp 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (53/160): ghc-srpm-macros-1.4.2-5.fc26.noarch.r 890 kB/s | 7.7 kB 00:00 (54-55/160): gnat-sr 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (54/160): gnat-srpm-macros-4-2.fc26.noarch.rpm 890 kB/s | 8.1 kB 00:00 (55-56/160): go-srpm 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (55/160): go-srpm-macros-2-9.fc27.noarch.rpm 527 kB/s | 7.9 kB 00:00 (56-57/160): ocaml-s 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (56/160): ocaml-srpm-macros-4-2.fc26.noarch.rpm 326 kB/s | 7.5 kB 00:00 (57-58/160): openbla 26% [===== ] 8.7 MB/s | 31 MB 00:09 ETA (57/160): perl-srpm-macros-1-23.fc27.noarch.rpm 416 kB/s | 9.2 kB 00:00 (58-59/160): openbla 26% 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Verifying : openssl-libs-1:1.1.0f-5.fc27.x86_64 41/160 Verifying : popt-1.16-8.fc26.x86_64 42/160 Verifying : rpm-4.13.0.1-31.fc27.x86_64 43/160 Verifying : rpm-build-libs-4.13.0.1-31.fc27.x86_64 44/160 Verifying : rpm-libs-4.13.0.1-31.fc27.x86_64 45/160 Verifying : xz-libs-5.2.3-2.fc26.x86_64 46/160 Verifying : zlib-1.2.11-2.fc26.x86_64 47/160 Verifying : ncurses-libs-6.0-10.20170520.fc27.x86_64 48/160 Verifying : filesystem-3.3-1.fc27.x86_64 49/160 Verifying : dwz-0.12-3.fc26.x86_64 50/160 Verifying : fedora-rpm-macros-26-2.fc26.noarch 51/160 Verifying : fpc-srpm-macros-1.1-2.fc26.noarch 52/160 Verifying : ghc-srpm-macros-1.4.2-5.fc26.noarch 53/160 Verifying : gnat-srpm-macros-4-2.fc26.noarch 54/160 Verifying : go-srpm-macros-2-9.fc27.noarch 55/160 Verifying : ocaml-srpm-macros-4-2.fc26.noarch 56/160 Verifying : openblas-srpm-macros-2-1.fc27.noarch 57/160 Verifying : perl-srpm-macros-1-23.fc27.noarch 58/160 Verifying : python-srpm-macros-3-20.fc27.noarch 59/160 Verifying : qt5-srpm-macros-5.9.0-2.fc27.noarch 60/160 Verifying : zip-3.0-18.fc26.x86_64 61/160 Verifying : pcre-8.41-1.fc27.x86_64 62/160 Verifying : coreutils-common-8.27-10.fc27.x86_64 63/160 Verifying : gmp-1:6.1.2-4.fc27.x86_64 64/160 Verifying : ncurses-6.0-10.20170520.fc27.x86_64 65/160 Verifying : libcap-ng-0.7.8-3.fc26.x86_64 66/160 Verifying : basesystem-11-3.fc26.noarch 67/160 Verifying : glibc-common-2.25.90-22.fc27.x86_64 68/160 Verifying : libsepol-2.6-1.fc26.x86_64 69/160 Verifying : ustr-1.0.4-22.fc26.x86_64 70/160 Verifying : libatomic_ops-7.4.6-1.fc27.x86_64 71/160 Verifying : libgcc-7.1.1-5.fc27.x86_64 72/160 Verifying : libstdc++-7.1.1-5.fc27.x86_64 73/160 Verifying : libffi-3.1-12.fc27.x86_64 74/160 Verifying : libtool-ltdl-2.4.6-18.fc27.x86_64 75/160 Verifying : libunistring-0.9.7-1.fc26.x86_64 76/160 Verifying : readline-7.0-5.fc26.x86_64 77/160 Verifying : fedora-repos-rawhide-27-0.2.noarch 78/160 Verifying : chkconfig-1.10-1.fc27.x86_64 79/160 Verifying : elfutils-default-yama-scope-0.169-3.fc27.noarch 80/160 Verifying : expat-2.2.1-2.fc27.x86_64 81/160 Verifying : libbabeltrace-1.5.2-2.fc27.x86_64 82/160 Verifying : libipt-1.6.1-2.fc27.x86_64 83/160 Verifying : system-python-libs-3.6.1-10.fc27.x86_64 84/160 Verifying : ca-certificates-2017.2.14-2.fc27.noarch 85/160 Verifying : crypto-policies-20170606-1.git7c32281.fc27.noarc 86/160 Verifying : libarchive-3.3.1-1.fc27.x86_64 87/160 Verifying : libdb-utils-5.3.28-24.fc27.x86_64 88/160 Verifying : gnupg2-2.1.21-2.fc27.x86_64 89/160 Verifying : rpm-plugin-selinux-4.13.0.1-31.fc27.x86_64 90/160 Verifying : ncurses-base-6.0-10.20170520.fc27.noarch 91/160 Verifying : tzdata-2017b-1.fc27.noarch 92/160 Verifying : glib2-2.53.3-1.fc27.x86_64 93/160 Verifying : libuuid-2.30-1.fc27.x86_64 94/160 Verifying : gdbm-1.13-1.fc27.x86_64 95/160 Verifying : sqlite-libs-3.19.3-1.fc27.x86_64 96/160 Verifying : libxml2-2.9.4-2.fc26.x86_64 97/160 Verifying : lz4-libs-1.7.5-4.fc27.x86_64 98/160 Verifying : gnutls-3.5.14-1.fc27.x86_64 99/160 Verifying : libassuan-2.4.3-2.fc26.x86_64 100/160 Verifying : libgcrypt-1.7.8-1.fc27.x86_64 101/160 Verifying : libgpg-error-1.27-1.fc27.x86_64 102/160 Verifying : libksba-1.3.5-3.fc26.x86_64 103/160 Verifying : libusbx-1.0.21-2.fc26.x86_64 104/160 Verifying : npth-1.5-1.fc27.x86_64 105/160 Verifying : openldap-2.4.45-1.fc27.x86_64 106/160 Verifying : libmount-2.30-1.fc27.x86_64 107/160 Verifying : libidn2-2.0.2-1.fc27.x86_64 108/160 Verifying : libtasn1-4.12-1.fc27.x86_64 109/160 Verifying : nettle-3.3-2.fc26.x86_64 110/160 Verifying : p11-kit-0.23.7-1.fc27.x86_64 111/160 Verifying : systemd-libs-233-6.fc27.x86_64 112/160 Verifying : cyrus-sasl-lib-2.1.26-32.fc27.x86_64 113/160 Verifying : nspr-4.15.0-1.fc27.x86_64 114/160 Verifying : nss-3.31.0-2.fc27.x86_64 115/160 Verifying : nss-util-3.31.0-2.fc27.x86_64 116/160 Verifying : libblkid-2.30-1.fc27.x86_64 117/160 Verifying : krb5-libs-1.15.1-14.fc27.x86_64 118/160 Verifying : libcom_err-1.43.4-2.fc26.x86_64 119/160 Verifying : nss-pem-1.0.3-3.fc27.x86_64 120/160 Verifying : nss-softokn-3.31.0-2.fc27.x86_64 121/160 Verifying : nss-sysinit-3.31.0-2.fc27.x86_64 122/160 Verifying : keyutils-libs-1.5.10-1.fc27.x86_64 123/160 Verifying : libverto-0.2.6-7.fc26.x86_64 124/160 Verifying : nss-softokn-freebl-3.31.0-2.fc27.x86_64 125/160 Verifying : gcc-c++-7.1.1-5.fc27.x86_64 126/160 Verifying : libmpc-1.0.2-6.fc26.x86_64 127/160 Verifying : mpfr-3.1.5-3.fc27.x86_64 128/160 Verifying : util-linux-2.30-1.fc27.x86_64 129/160 Verifying : libfdisk-2.30-1.fc27.x86_64 130/160 Verifying : libsmartcols-2.30-1.fc27.x86_64 131/160 Verifying : libutempter-1.1.6-9.fc26.x86_64 132/160 Verifying : pam-1.3.0-3.fc27.x86_64 133/160 Verifying : cracklib-2.9.6-5.fc26.x86_64 134/160 Verifying : gcc-7.1.1-5.fc27.x86_64 135/160 Verifying : cpp-7.1.1-5.fc27.x86_64 136/160 Verifying : isl-0.16.1-1.fc26.x86_64 137/160 Verifying : libgomp-7.1.1-5.fc27.x86_64 138/160 Verifying : unzip-6.0-33.fc26.x86_64 139/160 Verifying : gawk-4.1.4-3.fc26.x86_64 140/160 Verifying : libsigsegv-2.11-1.fc26.x86_64 141/160 Verifying : pkgconf-pkg-config-1.3.7-1.fc27.x86_64 142/160 Verifying : pkgconf-1.3.7-1.fc27.x86_64 143/160 Verifying : pkgconf-m4-1.3.7-1.fc27.noarch 144/160 Verifying : libpkgconf-1.3.7-1.fc27.x86_64 145/160 Verifying : libpwquality-1.4.0-1.fc27.x86_64 146/160 Verifying : p11-kit-trust-0.23.7-1.fc27.x86_64 147/160 Verifying : libstdc++-devel-7.1.1-5.fc27.x86_64 148/160 Verifying : glibc-devel-2.25.90-22.fc27.x86_64 149/160 Verifying : glibc-headers-2.25.90-22.fc27.x86_64 150/160 Verifying : kernel-headers-4.13.0-0.rc0.git5.1.fc27.x86_64 151/160 Verifying : libcrypt-nss-2.25.90-22.fc27.x86_64 152/160 Verifying : curl-7.54.1-2.fc27.x86_64 153/160 Verifying : libmetalink-0.1.3-2.fc26.x86_64 154/160 Verifying : glibc-all-langpacks-2.25.90-22.fc27.x86_64 155/160 Verifying : libcurl-7.54.1-2.fc27.x86_64 156/160 Verifying : libnghttp2-1.24.0-1.fc27.x86_64 157/160 Verifying : libpsl-0.17.0-2.fc26.x86_64 158/160 Verifying : libssh2-1.8.0-2.fc26.x86_64 159/160 Verifying : publicsuffix-list-dafsa-20170424-1.fc27.noarch 160/160 Installed: audit-libs.x86_64 2.7.7-1.fc27 basesystem.noarch 11-3.fc26 bash.x86_64 4.4.12-6.fc27 binutils.x86_64 2.28-9.fc27 bzip2.x86_64 1.0.6-22.fc26 bzip2-libs.x86_64 1.0.6-22.fc26 ca-certificates.noarch 2017.2.14-2.fc27 chkconfig.x86_64 1.10-1.fc27 coreutils.x86_64 8.27-10.fc27 coreutils-common.x86_64 8.27-10.fc27 cpio.x86_64 2.12-4.fc26 cpp.x86_64 7.1.1-5.fc27 cracklib.x86_64 2.9.6-5.fc26 crypto-policies.noarch 20170606-1.git7c32281.fc27 curl.x86_64 7.54.1-2.fc27 cyrus-sasl-lib.x86_64 2.1.26-32.fc27 diffutils.x86_64 3.6-1.fc27 dwz.x86_64 0.12-3.fc26 elfutils.x86_64 0.169-3.fc27 elfutils-default-yama-scope.noarch 0.169-3.fc27 elfutils-libelf.x86_64 0.169-3.fc27 elfutils-libs.x86_64 0.169-3.fc27 expat.x86_64 2.2.1-2.fc27 fedora-release.noarch 27-0.2 fedora-repos.noarch 27-0.2 fedora-repos-rawhide.noarch 27-0.2 fedora-rpm-macros.noarch 26-2.fc26 file.x86_64 5.31-1.fc27 file-libs.x86_64 5.31-1.fc27 filesystem.x86_64 3.3-1.fc27 findutils.x86_64 1:4.6.0-12.fc27 fpc-srpm-macros.noarch 1.1-2.fc26 gawk.x86_64 4.1.4-3.fc26 gc.x86_64 7.6.0-4.fc27 gcc.x86_64 7.1.1-5.fc27 gcc-c++.x86_64 7.1.1-5.fc27 gdb-headless.x86_64 8.0-17.fc27 gdbm.x86_64 1.13-1.fc27 ghc-srpm-macros.noarch 1.4.2-5.fc26 glib2.x86_64 2.53.3-1.fc27 glibc.x86_64 2.25.90-22.fc27 glibc-all-langpacks.x86_64 2.25.90-22.fc27 glibc-common.x86_64 2.25.90-22.fc27 glibc-devel.x86_64 2.25.90-22.fc27 glibc-headers.x86_64 2.25.90-22.fc27 gmp.x86_64 1:6.1.2-4.fc27 gnat-srpm-macros.noarch 4-2.fc26 gnupg2.x86_64 2.1.21-2.fc27 gnutls.x86_64 3.5.14-1.fc27 go-srpm-macros.noarch 2-9.fc27 grep.x86_64 3.1-1.fc27 guile.x86_64 5:2.0.14-1.fc26 gzip.x86_64 1.8-2.fc26 info.x86_64 6.4-2.fc27 isl.x86_64 0.16.1-1.fc26 kernel-headers.x86_64 4.13.0-0.rc0.git5.1.fc27 keyutils-libs.x86_64 1.5.10-1.fc27 krb5-libs.x86_64 1.15.1-14.fc27 libacl.x86_64 2.2.52-15.fc27 libarchive.x86_64 3.3.1-1.fc27 libassuan.x86_64 2.4.3-2.fc26 libatomic_ops.x86_64 7.4.6-1.fc27 libattr.x86_64 2.4.47-18.fc26 libbabeltrace.x86_64 1.5.2-2.fc27 libblkid.x86_64 2.30-1.fc27 libcap.x86_64 2.25-5.fc26 libcap-ng.x86_64 0.7.8-3.fc26 libcom_err.x86_64 1.43.4-2.fc26 libcrypt-nss.x86_64 2.25.90-22.fc27 libcurl.x86_64 7.54.1-2.fc27 libdb.x86_64 5.3.28-24.fc27 libdb-utils.x86_64 5.3.28-24.fc27 libfdisk.x86_64 2.30-1.fc27 libffi.x86_64 3.1-12.fc27 libgcc.x86_64 7.1.1-5.fc27 libgcrypt.x86_64 1.7.8-1.fc27 libgomp.x86_64 7.1.1-5.fc27 libgpg-error.x86_64 1.27-1.fc27 libidn2.x86_64 2.0.2-1.fc27 libipt.x86_64 1.6.1-2.fc27 libksba.x86_64 1.3.5-3.fc26 libmetalink.x86_64 0.1.3-2.fc26 libmount.x86_64 2.30-1.fc27 libmpc.x86_64 1.0.2-6.fc26 libnghttp2.x86_64 1.24.0-1.fc27 libpkgconf.x86_64 1.3.7-1.fc27 libpsl.x86_64 0.17.0-2.fc26 libpwquality.x86_64 1.4.0-1.fc27 libselinux.x86_64 2.6-6.fc27 libsemanage.x86_64 2.6-4.fc27 libsepol.x86_64 2.6-1.fc26 libsigsegv.x86_64 2.11-1.fc26 libsmartcols.x86_64 2.30-1.fc27 libssh2.x86_64 1.8.0-2.fc26 libstdc++.x86_64 7.1.1-5.fc27 libstdc++-devel.x86_64 7.1.1-5.fc27 libtasn1.x86_64 4.12-1.fc27 libtool-ltdl.x86_64 2.4.6-18.fc27 libunistring.x86_64 0.9.7-1.fc26 libusbx.x86_64 1.0.21-2.fc26 libutempter.x86_64 1.1.6-9.fc26 libuuid.x86_64 2.30-1.fc27 libverto.x86_64 0.2.6-7.fc26 libxml2.x86_64 2.9.4-2.fc26 lua-libs.x86_64 5.3.4-3.fc27 lz4-libs.x86_64 1.7.5-4.fc27 make.x86_64 1:4.2.1-2.fc26 mpfr.x86_64 3.1.5-3.fc27 ncurses.x86_64 6.0-10.20170520.fc27 ncurses-base.noarch 6.0-10.20170520.fc27 ncurses-libs.x86_64 6.0-10.20170520.fc27 nettle.x86_64 3.3-2.fc26 npth.x86_64 1.5-1.fc27 nspr.x86_64 4.15.0-1.fc27 nss.x86_64 3.31.0-2.fc27 nss-pem.x86_64 1.0.3-3.fc27 nss-softokn.x86_64 3.31.0-2.fc27 nss-softokn-freebl.x86_64 3.31.0-2.fc27 nss-sysinit.x86_64 3.31.0-2.fc27 nss-util.x86_64 3.31.0-2.fc27 ocaml-srpm-macros.noarch 4-2.fc26 openblas-srpm-macros.noarch 2-1.fc27 openldap.x86_64 2.4.45-1.fc27 openssl-libs.x86_64 1:1.1.0f-5.fc27 p11-kit.x86_64 0.23.7-1.fc27 p11-kit-trust.x86_64 0.23.7-1.fc27 pam.x86_64 1.3.0-3.fc27 patch.x86_64 2.7.5-4.fc26 pcre.x86_64 8.41-1.fc27 perl-srpm-macros.noarch 1-23.fc27 pkgconf.x86_64 1.3.7-1.fc27 pkgconf-m4.noarch 1.3.7-1.fc27 pkgconf-pkg-config.x86_64 1.3.7-1.fc27 popt.x86_64 1.16-8.fc26 publicsuffix-list-dafsa.noarch 20170424-1.fc27 python-srpm-macros.noarch 3-20.fc27 qt5-srpm-macros.noarch 5.9.0-2.fc27 readline.x86_64 7.0-5.fc26 redhat-rpm-config.noarch 64-1.fc27 rpm.x86_64 4.13.0.1-31.fc27 rpm-build.x86_64 4.13.0.1-31.fc27 rpm-build-libs.x86_64 4.13.0.1-31.fc27 rpm-libs.x86_64 4.13.0.1-31.fc27 rpm-plugin-selinux.x86_64 4.13.0.1-31.fc27 sed.x86_64 4.4-1.fc26 setup.noarch 2.10.5-2.fc26 shadow-utils.x86_64 2:4.3.1-3.fc26 sqlite-libs.x86_64 3.19.3-1.fc27 system-python-libs.x86_64 3.6.1-10.fc27 systemd-libs.x86_64 233-6.fc27 tar.x86_64 2:1.29-4.fc26 tzdata.noarch 2017b-1.fc27 unzip.x86_64 6.0-33.fc26 ustr.x86_64 1.0.4-22.fc26 util-linux.x86_64 2.30-1.fc27 which.x86_64 2.21-2.fc26 xz.x86_64 5.2.3-2.fc26 xz-libs.x86_64 5.2.3-2.fc26 zip.x86_64 3.0-18.fc26 zlib.x86_64 1.2.11-2.fc26 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Finish: rpmbuild -bs Finish: buildsrpm INFO: Done(moose.spec) Config(child) 1 minutes 5 seconds INFO: Results and/or logs in: intermediate-srpm Finish: run INFO: unmounting tmpfs. WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(intermediate-srpm/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm) Config(579096-fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/579096-fedora-rawhide-x86_64/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Finish: chroot init Start: build phase for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Start: build setup for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm "Copr repository" 0% [ ] --- B/s | 0 B --:-- ETA "Copr repository" 4.3 MB/s | 238 kB 00:00 fedora 0% [ ] --- B/s | 0 B --:-- ETA fedora 18% [===- ] 34 MB/s | 10 MB 00:01 ETA fedora 42% [======== ] 35 MB/s | 24 MB 00:00 ETA fedora 61% [============ ] 35 MB/s | 34 MB 00:00 ETA fedora 85% [================= ] 35 MB/s | 48 MB 00:00 ETA fedora 36 MB/s | 56 MB 00:01 Last metadata expiration check: 0:00:00 ago on Fri 14 Jul 2017 05:30:40 AM UTC. Package gcc-c++-7.1.1-5.fc27.x86_64 is already installed, skipping. Package make-1:4.2.1-2.fc26.x86_64 is already installed, skipping. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: checksec noarch 1.7.4-3.fc26 fedora 26 k cmake x86_64 3.8.2-1.fc27 fedora 7.3 M gsl-devel x86_64 2.4-1.fc27 copr_base 563 k hdf5-devel x86_64 1.8.18-5.fc26 fedora 923 k libsbml-devel x86_64 5.15.0-4.fc27 fedora 791 k muParser-devel x86_64 2.2.5-3.fc27 fedora 30 k ncurses-devel x86_64 6.0-10.20170520.fc27 fedora 518 k python2-devel x86_64 2.7.13-12.fc27 fedora 408 k python2-numpy x86_64 1:1.13.1-1.fc27 fedora 3.5 M python3-devel x86_64 3.6.1-10.fc27 fedora 860 k python3-numpy x86_64 1:1.13.1-1.fc27 fedora 3.3 M readline-devel x86_64 7.0-5.fc26 fedora 181 k rsync x86_64 3.1.2-5.fc27 fedora 393 k tinyxml-devel x86_64 2.6.2-12.fc26 fedora 109 k zlib-devel x86_64 1.2.11-2.fc26 fedora 56 k Installing dependencies: atlas x86_64 3.10.2-16.fc26 fedora 6.2 M autoconf noarch 2.69-24.fc26 fedora 709 k automake noarch 1.15-9.fc26 fedora 695 k cmake-data noarch 3.8.2-1.fc27 fedora 1.2 M emacs-filesystem noarch 1:25.2-2.fc27 fedora 66 k groff-base x86_64 1.22.3-9.fc26 fedora 1.0 M gsl x86_64 2.4-1.fc27 copr_base 998 k hdf5 x86_64 1.8.18-5.fc26 fedora 1.7 M jsoncpp x86_64 1.8.1-3.fc27 fedora 83 k libgfortran x86_64 7.1.1-5.fc27 fedora 532 k libquadmath x86_64 7.1.1-5.fc27 fedora 179 k libsbml x86_64 5.15.0-4.fc27 fedora 1.9 M libuv x86_64 1:1.13.1-1.fc27 fedora 117 k libxml2-devel x86_64 2.9.4-2.fc26 fedora 1.1 M m4 x86_64 1.4.18-3.fc26 fedora 217 k minizip x86_64 1.2.11-2.fc26 fedora 38 k muParser x86_64 2.2.5-3.fc27 fedora 118 k ncurses-c++-libs x86_64 6.0-10.20170520.fc27 fedora 55 k perl x86_64 4:5.26.0-394.fc27 fedora 6.2 M perl-Carp noarch 1.42-393.fc27 fedora 28 k perl-Data-Dumper x86_64 2.167-394.fc27 fedora 55 k perl-Encode x86_64 4:2.91-11.fc27 fedora 1.5 M perl-Errno x86_64 1.28-394.fc27 fedora 69 k perl-Exporter noarch 5.72-394.fc27 fedora 32 k perl-File-Path noarch 2.14-1.fc27 fedora 36 k perl-File-Temp noarch 0.230.400-393.fc27 fedora 61 k perl-Getopt-Long noarch 1:2.50-2.fc27 fedora 61 k perl-HTTP-Tiny noarch 0.070-393.fc27 fedora 56 k perl-IO x86_64 1.38-394.fc27 fedora 134 k perl-MIME-Base64 x86_64 3.15-393.fc27 fedora 28 k perl-PathTools x86_64 3.67-393.fc27 fedora 88 k perl-Pod-Escapes noarch 1:1.07-393.fc27 fedora 19 k perl-Pod-Perldoc noarch 3.28-394.fc27 fedora 87 k perl-Pod-Simple noarch 1:3.35-393.fc27 fedora 211 k perl-Pod-Usage noarch 4:1.69-393.fc27 fedora 33 k perl-Scalar-List-Utils x86_64 3:1.48-1.fc27 fedora 65 k perl-Socket x86_64 4:2.024-3.fc27 fedora 56 k perl-Storable x86_64 1:2.62-393.fc27 fedora 83 k perl-Term-ANSIColor noarch 4.06-394.fc27 fedora 44 k perl-Term-Cap noarch 1.17-393.fc27 fedora 21 k perl-Text-ParseWords noarch 3.30-393.fc27 fedora 16 k perl-Text-Tabs+Wrap noarch 2013.0523-393.fc27 fedora 22 k perl-Thread-Queue noarch 3.12-393.fc27 fedora 22 k perl-Time-Local noarch 1:1.250-393.fc27 fedora 30 k perl-Unicode-Normalize x86_64 1.25-393.fc27 fedora 79 k perl-constant noarch 1.33-394.fc27 fedora 24 k perl-libs x86_64 4:5.26.0-394.fc27 fedora 1.5 M perl-macros x86_64 4:5.26.0-394.fc27 fedora 65 k perl-parent noarch 1:0.236-393.fc27 fedora 18 k perl-podlators noarch 4.09-393.fc27 fedora 114 k perl-threads x86_64 1:2.16-2.fc27 fedora 58 k perl-threads-shared x86_64 1.57-2.fc27 fedora 45 k python-rpm-macros noarch 3-20.fc27 fedora 9.6 k python2 x86_64 2.7.13-12.fc27 fedora 98 k python2-libs x86_64 2.7.13-12.fc27 fedora 6.3 M python2-nose noarch 1.3.7-13.fc26 fedora 266 k python2-pip noarch 9.0.1-10.fc27 fedora 1.8 M python2-rpm-macros noarch 3-20.fc27 fedora 9.0 k python2-setuptools noarch 36.0.1-1.fc27 fedora 595 k python3 x86_64 3.6.1-10.fc27 fedora 64 k python3-libs x86_64 3.6.1-10.fc27 fedora 1.4 M python3-pip noarch 9.0.1-10.fc27 fedora 1.7 M python3-rpm-generators noarch 4.13.0.1-2.fc27 fedora 23 k python3-rpm-macros noarch 3-20.fc27 fedora 9.0 k python3-setuptools noarch 36.0.1-1.fc27 fedora 594 k rhash x86_64 1.3.4-2.fc27 fedora 126 k tinyxml x86_64 2.6.2-12.fc26 fedora 53 k xz-devel x86_64 5.2.3-2.fc26 fedora 60 k Transaction Summary ================================================================================ Install 83 Packages Total download size: 60 M Installed size: 231 M Downloading Packages: (1/83): checksec-1.7 0% [ ] --- B/s | 0 B --:-- ETA (1/83): checksec-1.7.4-3.fc26.noarch.rpm 238 kB/s | 26 kB 00:00 (2-3/83): python3-nu 0% [ ] 1.4 MB/s | 154 kB 00:42 ETA (2/83): rsync-3.1.2-5.fc27.x86_64.rpm 2.1 MB/s | 393 kB 00:00 (3-4/83): python3-nu 3% [- ] 1.8 MB/s | 2.1 MB 00:32 ETA (3/83): gsl-devel-2.4-1.fc27.x86_64.rpm 2.2 MB/s | 563 kB 00:00 (4-5/83): python3-nu 6% [= ] 2.1 MB/s | 4.1 MB 00:26 ETA (4/83): python3-numpy-1.13.1-1.fc27.x86_64.rpm 2.6 MB/s | 3.3 MB 00:01 (5-6/83): hdf5-devel 7% [= ] 1.8 MB/s | 4.2 MB 00:31 ETA (5/83): hdf5-devel-1.8.18-5.fc26.x86_64.rpm 931 kB/s | 923 kB 00:00 (6-7/83): libsbml-de 16% [=== ] 2.9 MB/s | 10 MB 00:17 ETA (6/83): cmake-3.8.2-1.fc27.x86_64.rpm 5.1 MB/s | 7.3 MB 00:01 (7-8/83): muParser-d 21% [==== ] 3.4 MB/s | 13 MB 00:13 ETA (7/83): muParser-devel-2.2.5-3.fc27.x86_64.rpm 280 kB/s | 30 kB 00:00 (8-9/83): ncurses-de 21% [==== ] 3.4 MB/s | 13 MB 00:13 ETA (8/83): libsbml-devel-5.15.0-4.fc27.x86_64.rpm 2.5 MB/s | 791 kB 00:00 (9-10/83): python2-n 22% [====- ] 3.5 MB/s | 13 MB 00:13 ETA (9/83): ncurses-devel-6.0-10.20170520.fc27.x86_ 14 MB/s | 518 kB 00:00 (10-11/83): python2- 23% [====- ] 3.6 MB/s | 14 MB 00:12 ETA (10/83): python2-devel-2.7.13-12.fc27.x86_64.rp 10 MB/s | 408 kB 00:00 (11-12/83): python3- 24% [====- ] 3.7 MB/s | 15 MB 00:12 ETA (11/83): python2-numpy-1.13.1-1.fc27.x86_64.rpm 22 MB/s | 3.5 MB 00:00 (12-13/83): python3- 30% [====== ] 4.4 MB/s | 18 MB 00:09 ETA (12/83): readline-devel-7.0-5.fc26.x86_64.rpm 1.6 MB/s | 181 kB 00:00 (13-14/83): python3- 31% [====== ] 4.4 MB/s | 19 MB 00:09 ETA (13/83): python3-devel-3.6.1-10.fc27.x86_64.rpm 6.0 MB/s | 860 kB 00:00 (14-15/83): tinyxml- 31% [====== ] 4.4 MB/s | 19 MB 00:09 ETA (14/83): zlib-devel-1.2.11-2.fc26.x86_64.rpm 2.0 MB/s | 56 kB 00:00 (15-16/83): tinyxml- 31% [====== ] 4.4 MB/s | 19 MB 00:09 ETA (15-17/83): tinyxml- 33% [======- ] 4.2 MB/s | 20 MB 00:09 ETA (15/83): tinyxml-devel-2.6.2-12.fc26.x86_64.rpm 189 kB/s | 109 kB 00:00 (16-17/83): atlas-3. 34% [======- ] 4.3 MB/s | 21 MB 00:09 ETA (16-18/83): libgfort 36% [======= ] 4.1 MB/s | 22 MB 00:09 ETA (16/83): libgfortran-7.1.1-5.fc27.x86_64.rpm 488 kB/s | 532 kB 00:01 (17-18/83): libquadm 38% [=======- ] 4.3 MB/s | 23 MB 00:08 ETA (17-19/83): libquadm 38% [=======- ] 3.9 MB/s | 23 MB 00:09 ETA (17-19/83): cmake-da 42% [========- ] 3.9 MB/s | 25 MB 00:08 ETA (17/83): atlas-3.10.2-16.fc26.x86_64.rpm 2.7 MB/s | 6.2 MB 00:02 (18-19/83): libquadm 42% [========- ] 3.8 MB/s | 26 MB 00:08 ETA (18/83): libquadmath-7.1.1-5.fc27.x86_64.rpm 103 kB/s | 179 kB 00:01 (19-20/83): cmake-da 43% [========- ] 3.9 MB/s | 26 MB 00:08 ETA (19/83): libuv-1.13.1-1.fc27.x86_64.rpm 6.0 MB/s | 117 kB 00:00 (20-21/83): cmake-da 44% [========- ] 4.0 MB/s | 27 MB 00:08 ETA (20/83): jsoncpp-1.8.1-3.fc27.x86_64.rpm 2.3 MB/s | 83 kB 00:00 (21-22/83): cmake-da 44% [========- ] 4.1 MB/s | 27 MB 00:08 ETA (21/83): rhash-1.3.4-2.fc27.x86_64.rpm 8.8 MB/s | 126 kB 00:00 (22-23/83): cmake-da 45% [========= ] 4.1 MB/s | 27 MB 00:07 ETA (22/83): cmake-data-3.8.2-1.fc27.noarch.rpm 993 kB/s | 1.2 MB 00:01 (23-24/83): gsl-2.4- 46% [========= ] 4.2 MB/s | 27 MB 00:07 ETA (23/83): automake-1.15-9.fc26.noarch.rpm 17 MB/s | 695 kB 00:00 (24-25/83): gsl-2.4- 48% [=========- ] 4.4 MB/s | 29 MB 00:07 ETA (24/83): gsl-2.4-1.fc27.x86_64.rpm 17 MB/s | 998 kB 00:00 (25-26/83): hdf5-1.8 48% [=========- ] 4.5 MB/s | 29 MB 00:06 ETA (25/83): muParser-2.2.5-3.fc27.x86_64.rpm 3.5 MB/s | 118 kB 00:00 (26-27/83): hdf5-1.8 50% [========== ] 4.7 MB/s | 30 MB 00:06 ETA (26/83): ncurses-c++-libs-6.0-10.20170520.fc27. 2.1 MB/s | 55 kB 00:00 (27-28/83): hdf5-1.8 52% [==========- ] 4.9 MB/s | 31 MB 00:05 ETA (27/83): hdf5-1.8.18-5.fc26.x86_64.rpm 13 MB/s | 1.7 MB 00:00 (28-29/83): libsbml- 54% [==========- ] 5.0 MB/s | 32 MB 00:05 ETA (28/83): libsbml-5.15.0-4.fc27.x86_64.rpm 13 MB/s | 1.9 MB 00:00 (29-30/83): python2- 55% [=========== ] 5.2 MB/s | 33 MB 00:05 ETA (29/83): python-rpm-macros-3-20.fc27.noarch.rpm 578 kB/s | 9.6 kB 00:00 (30-31/83): python2- 56% [=========== ] 5.3 MB/s | 34 MB 00:04 ETA (30/83): python2-nose-1.3.7-13.fc26.noarch.rpm 4.5 MB/s | 266 kB 00:00 (31-32/83): python2- 57% [=========== ] 5.3 MB/s | 34 MB 00:04 ETA (31/83): python2-rpm-macros-3-20.fc27.noarch.rp 754 kB/s | 9.0 kB 00:00 (32-33/83): python2- 57% [===========- ] 5.4 MB/s | 35 MB 00:04 ETA (32/83): python3-rpm-generators-4.13.0.1-2.fc27 1.1 MB/s | 23 kB 00:00 (33-34/83): python2- 59% [===========- ] 5.5 MB/s | 35 MB 00:04 ETA (33/83): python2-2.7.13-12.fc27.x86_64.rpm 2.0 MB/s | 98 kB 00:00 (34-35/83): python2- 59% [===========- ] 5.6 MB/s | 36 MB 00:04 ETA 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[===============- ] 5.5 MB/s | 46 MB 00:02 ETA (40/83): perl-5.26.0-394.fc27.x86_64.rpm 3.6 MB/s | 6.2 MB 00:01 (41-42/83): perl-Car 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (41/83): perl-Carp-1.42-393.fc27.noarch.rpm 17 kB/s | 28 kB 00:01 (42-43/83): perl-Err 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (42/83): perl-Errno-1.28-394.fc27.x86_64.rpm 42 kB/s | 69 kB 00:01 (43-44/83): perl-Exp 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (43/83): perl-File-Path-2.14-1.fc27.noarch.rpm 647 kB/s | 36 kB 00:00 (44-45/83): perl-Exp 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (44/83): perl-Getopt-Long-2.50-2.fc27.noarch.rp 5.2 MB/s | 61 kB 00:00 (45-46/83): perl-Exp 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (45/83): perl-Exporter-5.72-394.fc27.noarch.rpm 435 kB/s | 32 kB 00:00 (46-47/83): perl-IO- 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (46/83): perl-PathTools-3.67-393.fc27.x86_64.rp 4.7 MB/s | 88 kB 00:00 (47-48/83): perl-IO- 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (47/83): perl-Thread-Queue-3.12-393.fc27.noarch 1.3 MB/s | 22 kB 00:00 (48-49/83): perl-IO- 80% [================ ] 5.7 MB/s | 48 MB 00:02 ETA (48/83): perl-IO-1.38-394.fc27.x86_64.rpm 3.5 MB/s | 134 kB 00:00 (49-50/83): perl-con 80% [================ ] 5.7 MB/s | 48 MB 00:01 ETA (49/83): perl-constant-1.33-394.fc27.noarch.rpm 648 kB/s | 24 kB 00:00 (50-51/83): perl-thr 81% [================ ] 5.7 MB/s | 48 MB 00:01 ETA (50/83): minizip-1.2.11-2.fc26.x86_64.rpm 1.4 MB/s | 38 kB 00:00 (51-52/83): perl-thr 81% [================ ] 5.7 MB/s | 48 MB 00:01 ETA (51/83): perl-threads-2.16-2.fc27.x86_64.rpm 1.5 MB/s | 58 kB 00:00 (52-53/83): python2- 81% [================ ] 5.7 MB/s | 48 MB 00:01 ETA (52/83): python2-setuptools-36.0.1-1.fc27.noarc 14 MB/s | 595 kB 00:00 (53-54/83): python2- 82% [================ ] 5.8 MB/s | 49 MB 00:01 ETA (53/83): m4-1.4.18-3.fc26.x86_64.rpm 4.1 MB/s | 217 kB 00:00 (54-55/83): python2- 85% [================= ] 6.1 MB/s | 51 MB 00:01 ETA (54/83): python2-pip-9.0.1-10.fc27.noarch.rpm 18 MB/s | 1.8 MB 00:00 (55-56/83): python3- 85% [================= ] 6.1 MB/s | 51 MB 00:01 ETA (55/83): python3-setuptools-36.0.1-1.fc27.noarc 4.8 MB/s | 594 kB 00:00 (56-57/83): perl-Dat 86% [================= ] 6.2 MB/s | 52 MB 00:01 ETA (56/83): perl-Text-ParseWords-3.30-393.fc27.noa 542 kB/s | 16 kB 00:00 (57-58/83): perl-Dat 86% [================= ] 6.2 MB/s | 52 MB 00:01 ETA (57/83): perl-Data-Dumper-2.167-394.fc27.x86_64 1.2 MB/s | 55 kB 00:00 (58-59/83): perl-Sca 86% [================= ] 6.2 MB/s | 52 MB 00:01 ETA (58/83): perl-Scalar-List-Utils-1.48-1.fc27.x86 2.3 MB/s | 65 kB 00:00 (59-60/83): perl-Tex 86% [================= ] 6.2 MB/s | 52 MB 00:01 ETA (59/83): perl-Unicode-Normalize-1.25-393.fc27.x 1.9 MB/s | 79 kB 00:00 (60-61/83): perl-Tex 86% [================= ] 6.2 MB/s | 52 MB 00:01 ETA (60/83): perl-Text-Tabs+Wrap-2013.0523-393.fc27 347 kB/s | 22 kB 00:00 (61-62/83): perl-lib 86% [================= ] 6.1 MB/s | 52 MB 00:01 ETA (61/83): perl-libs-5.26.0-394.fc27.x86_64.rpm 16 MB/s | 1.5 MB 00:00 (62-63/83): perl-mac 89% [=================- ] 6.4 MB/s | 53 MB 00:00 ETA (62/83): perl-parent-0.236-393.fc27.noarch.rpm 294 kB/s | 18 kB 00:00 (63-64/83): perl-mac 89% [=================- ] 6.4 MB/s | 53 MB 00:00 ETA (63/83): perl-macros-5.26.0-394.fc27.x86_64.rpm 691 kB/s | 65 kB 00:00 (64-65/83): perl-thr 89% [=================- ] 6.4 MB/s | 53 MB 00:00 ETA (64/83): perl-Pod-Usage-1.69-393.fc27.noarch.rp 62 kB/s | 33 kB 00:00 (65-66/83): perl-Soc 89% [=================- ] 5.7 MB/s | 54 MB 00:01 ETA (65/83): perl-threads-shared-1.57-2.fc27.x86_64 84 kB/s | 45 kB 00:00 (66-67/83): perl-Pod 89% [=================- ] 5.7 MB/s | 54 MB 00:01 ETA (66/83): perl-Socket-2.024-3.fc27.x86_64.rpm 107 kB/s | 56 kB 00:00 (67-68/83): perl-pod 89% [=================- ] 5.7 MB/s | 54 MB 00:01 ETA (67-69/83): perl-Pod 89% [=================- ] 5.7 MB/s | 54 MB 00:01 ETA (67/83): perl-Pod-Perldoc-3.28-394.fc27.noarch. 80 kB/s | 87 kB 00:01 (68-69/83): perl-pod 89% [=================- ] 5.7 MB/s | 54 MB 00:01 ETA (68/83): perl-podlators-4.09-393.fc27.noarch.rp 104 kB/s | 114 kB 00:01 (69-70/83): groff-ba 90% [================== ] 5.7 MB/s | 54 MB 00:01 ETA (69/83): perl-HTTP-Tiny-0.070-393.fc27.noarch.r 3.8 MB/s | 56 kB 00:00 (70-71/83): groff-ba 91% [================== ] 5.8 MB/s | 54 MB 00:00 ETA (70/83): perl-File-Temp-0.230.400-393.fc27.noar 1.4 MB/s | 61 kB 00:00 (71-72/83): groff-ba 92% [================== ] 5.9 MB/s | 55 MB 00:00 ETA (71/83): groff-base-1.22.3-9.fc26.x86_64.rpm 892 kB/s | 1.0 MB 00:01 (72-73/83): perl-Pod 92% [================== ] 5.9 MB/s | 55 MB 00:00 ETA (72/83): perl-Pod-Simple-3.35-393.fc27.noarch.r 9.1 MB/s | 211 kB 00:00 (73-74/83): perl-Ter 92% [================== ] 5.9 MB/s | 55 MB 00:00 ETA (73/83): perl-Term-Cap-1.17-393.fc27.noarch.rpm 747 kB/s | 21 kB 00:00 (74-75/83): perl-Ter 92% [================== ] 5.9 MB/s | 55 MB 00:00 ETA (74/83): perl-MIME-Base64-3.15-393.fc27.x86_64. 578 kB/s | 28 kB 00:00 (75-76/83): perl-Ter 92% [================== ] 5.8 MB/s | 55 MB 00:00 ETA (75/83): perl-Time-Local-1.250-393.fc27.noarch. 1.0 MB/s | 30 kB 00:00 (76-77/83): perl-Ter 92% [================== ] 5.8 MB/s | 55 MB 00:00 ETA (76/83): perl-Term-ANSIColor-4.06-394.fc27.noar 558 kB/s | 44 kB 00:00 (77-78/83): perl-Pod 92% [================== ] 5.8 MB/s | 55 MB 00:00 ETA (77/83): perl-Pod-Escapes-1.07-393.fc27.noarch. 362 kB/s | 19 kB 00:00 (78-79/83): python3- 92% [================== ] 5.8 MB/s | 55 MB 00:00 ETA (78/83): python3-3.6.1-10.fc27.x86_64.rpm 979 kB/s | 64 kB 00:00 (79-80/83): python3- 92% [==================- ] 5.8 MB/s | 55 MB 00:00 ETA (79/83): python3-pip-9.0.1-10.fc27.noarch.rpm 15 MB/s | 1.7 MB 00:00 (80-81/83): perl-Enc 95% [=================== ] 6.1 MB/s | 57 MB 00:00 ETA (80/83): perl-Storable-2.62-393.fc27.x86_64.rpm 1.0 MB/s | 83 kB 00:00 (81-82/83): perl-Enc 96% [=================== ] 6.1 MB/s | 57 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ncurses-devel.x86_64 6.0-10.20170520.fc27 python2-devel.x86_64 2.7.13-12.fc27 python2-numpy.x86_64 1:1.13.1-1.fc27 python3-devel.x86_64 3.6.1-10.fc27 python3-numpy.x86_64 1:1.13.1-1.fc27 readline-devel.x86_64 7.0-5.fc26 rsync.x86_64 3.1.2-5.fc27 tinyxml-devel.x86_64 2.6.2-12.fc26 zlib-devel.x86_64 1.2.11-2.fc26 atlas.x86_64 3.10.2-16.fc26 autoconf.noarch 2.69-24.fc26 automake.noarch 1.15-9.fc26 cmake-data.noarch 3.8.2-1.fc27 emacs-filesystem.noarch 1:25.2-2.fc27 groff-base.x86_64 1.22.3-9.fc26 gsl.x86_64 2.4-1.fc27 hdf5.x86_64 1.8.18-5.fc26 jsoncpp.x86_64 1.8.1-3.fc27 libgfortran.x86_64 7.1.1-5.fc27 libquadmath.x86_64 7.1.1-5.fc27 libsbml.x86_64 5.15.0-4.fc27 libuv.x86_64 1:1.13.1-1.fc27 libxml2-devel.x86_64 2.9.4-2.fc26 m4.x86_64 1.4.18-3.fc26 minizip.x86_64 1.2.11-2.fc26 muParser.x86_64 2.2.5-3.fc27 ncurses-c++-libs.x86_64 6.0-10.20170520.fc27 perl.x86_64 4:5.26.0-394.fc27 perl-Carp.noarch 1.42-393.fc27 perl-Data-Dumper.x86_64 2.167-394.fc27 perl-Encode.x86_64 4:2.91-11.fc27 perl-Errno.x86_64 1.28-394.fc27 perl-Exporter.noarch 5.72-394.fc27 perl-File-Path.noarch 2.14-1.fc27 perl-File-Temp.noarch 0.230.400-393.fc27 perl-Getopt-Long.noarch 1:2.50-2.fc27 perl-HTTP-Tiny.noarch 0.070-393.fc27 perl-IO.x86_64 1.38-394.fc27 perl-MIME-Base64.x86_64 3.15-393.fc27 perl-PathTools.x86_64 3.67-393.fc27 perl-Pod-Escapes.noarch 1:1.07-393.fc27 perl-Pod-Perldoc.noarch 3.28-394.fc27 perl-Pod-Simple.noarch 1:3.35-393.fc27 perl-Pod-Usage.noarch 4:1.69-393.fc27 perl-Scalar-List-Utils.x86_64 3:1.48-1.fc27 perl-Socket.x86_64 4:2.024-3.fc27 perl-Storable.x86_64 1:2.62-393.fc27 perl-Term-ANSIColor.noarch 4.06-394.fc27 perl-Term-Cap.noarch 1.17-393.fc27 perl-Text-ParseWords.noarch 3.30-393.fc27 perl-Text-Tabs+Wrap.noarch 2013.0523-393.fc27 perl-Thread-Queue.noarch 3.12-393.fc27 perl-Time-Local.noarch 1:1.250-393.fc27 perl-Unicode-Normalize.x86_64 1.25-393.fc27 perl-constant.noarch 1.33-394.fc27 perl-libs.x86_64 4:5.26.0-394.fc27 perl-macros.x86_64 4:5.26.0-394.fc27 perl-parent.noarch 1:0.236-393.fc27 perl-podlators.noarch 4.09-393.fc27 perl-threads.x86_64 1:2.16-2.fc27 perl-threads-shared.x86_64 1.57-2.fc27 python-rpm-macros.noarch 3-20.fc27 python2.x86_64 2.7.13-12.fc27 python2-libs.x86_64 2.7.13-12.fc27 python2-nose.noarch 1.3.7-13.fc26 python2-pip.noarch 9.0.1-10.fc27 python2-rpm-macros.noarch 3-20.fc27 python2-setuptools.noarch 36.0.1-1.fc27 python3.x86_64 3.6.1-10.fc27 python3-libs.x86_64 3.6.1-10.fc27 python3-pip.noarch 9.0.1-10.fc27 python3-rpm-generators.noarch 4.13.0.1-2.fc27 python3-rpm-macros.noarch 3-20.fc27 python3-setuptools.noarch 36.0.1-1.fc27 rhash.x86_64 1.3.4-2.fc27 tinyxml.x86_64 2.6.2-12.fc26 xz-devel.x86_64 5.2.3-2.fc26 Complete! Finish: build setup for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Start: rpmbuild moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ic8M8D + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/gzip -dc /builddir/build/SOURCES/moose-0e12e41.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/0001-Tell-setup.py-about-the-.so-suffix-too.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0002-Make-libmoose-static-for-now.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.US6gZ5 + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + mkdir -p build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build2 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python2 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib64/libhdf5_hl.so/usr/lib64/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib64/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python2 (found version "2.7.13") -- Found NumPy: version "1.13.1" /usr/lib64/python2.7/site-packages/numpy/core/include -- Checking for module 'python2' -- Found python2, version 2.7 Python include dir: /usr/include/python2.7 Python libraries: python2.7 Python executable: /usr/bin/python2 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Scanning dependencies of target intfire make[2]: Leaving directory 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/consts.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 0%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Element.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Element.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdThreshIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/DataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/DataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/GlobalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Eref.cpp.o -c 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-I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DestFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/DestFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 5%] Building CXX object intfire/CMakeFiles/intfire.dir/IzhIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IzhIF.cpp make[2]: Leaving directory 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-fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 7%] Building CXX object basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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&& /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/QIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/QIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 8%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/testIntFire.cpp.o -c 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CMakeFiles/intfire.dir/testIntFire.cpp.o /usr/bin/ranlib libintfire.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 8%] Built target intfire make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 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basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory 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/usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ObjId.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ObjId.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/global.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/global.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 12%] Building CXX object basecode/CMakeFiles/basecode.dir/SetGet.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SetGet.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SetGet.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 12%] Building CXX object basecode/CMakeFiles/basecode.dir/OpFuncBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/OpFuncBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/OpFuncBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 11%] Building CXX object msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToAllMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToAllMsg.cpp make[2]: Leaving directory 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-fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToOneMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToOneMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 14%] Building CXX object basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SparseMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML 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basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wmake[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' unused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Scanning dependencies of target shell make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o CMakeFiles/msg.dir/OneToOneMsg.cpp.o CMakeFiles/msg.dir/SingleMsg.cpp.o CMakeFiles/msg.dir/SparseMsg.cpp.o CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o CMakeFiles/msg.dir/testMsg.cpp.o /usr/bin/ranlib libmsg.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Built target msg make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum/CMakeFiles/randnum.dir/DependInfo.cmake --color= Scanning dependencies of target randnum make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Binomial.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/BinomialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/BinomialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/Exponential.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellCopy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 19%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 19%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Gamma.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Gamma.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/SaveModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Poisson.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS 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shell/CMakeFiles/shell.dir/Neutral.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Neutral.cpp.o -c 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randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c 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--verbose=1 /usr/bin/ar qc librandnum.a CMakeFiles/randnum.dir/Binomial.cpp.o CMakeFiles/randnum.dir/BinomialRng.cpp.o CMakeFiles/randnum.dir/Exponential.cpp.o CMakeFiles/randnum.dir/ExponentialRng.cpp.o CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 25%] Built target randnum make[1]: Leaving directory 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse 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biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 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object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHGate.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHGate.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHGate2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHGate2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConcBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MgBlock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MgBlock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IzhikevichNrn.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Leakage.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VectorTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VectorTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovRateTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovGslSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Spine.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o /usr/bin/ranlib libbiophysics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Built target biophysics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Arith.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Mstring.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Mstring.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 46%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TableBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 46%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 51%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 51%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 51%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd 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utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/strutil.cpp.o -c 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/types.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/types.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 52%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/numutil.cpp.o -c 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/cmake -P CMakeFiles/utility.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility.dir/link.txt --verbose=1 /usr/bin/ar qc libutility.a CMakeFiles/utility.dir/strutil.cpp.o CMakeFiles/utility.dir/types.cpp.o CMakeFiles/utility.dir/setupenv.cpp.o CMakeFiles/utility.dir/numutil.cpp.o CMakeFiles/utility.dir/Annotator.cpp.o CMakeFiles/utility.dir/Vec.cpp.o /usr/bin/ranlib libutility.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh/CMakeFiles/mesh.dir/DependInfo.cmake --color= Scanning dependencies of target mesh make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/build 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/ChemCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 57%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 57%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 59%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 59%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml/CMakeFiles/moose_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target moose_sbml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 70%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 70%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/SteadyState.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode 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hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode 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hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd 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CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/FastMatrixElim.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/testDiffusion.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 79%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device/CMakeFiles/device.dir/DependInfo.cmake --color= Scanning dependencies of target device make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 79%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PulseGen.cpp.o -c 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/DiffAmp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/RC.cpp.o -c 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make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 81%] Built target device make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake --color= Scanning dependencies of target benchmarks make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 82%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -c 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 83%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Pool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReacBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReacBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/CplxEnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Enz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Enz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 90%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o CMakeFiles/kinetics.dir/ReacBase.cpp.o CMakeFiles/kinetics.dir/Reac.cpp.o CMakeFiles/kinetics.dir/EnzBase.cpp.o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o CMakeFiles/kinetics.dir/Enz.cpp.o CMakeFiles/kinetics.dir/MMenz.cpp.o CMakeFiles/kinetics.dir/Species.cpp.o CMakeFiles/kinetics.dir/ReadKkit.cpp.o CMakeFiles/kinetics.dir/WriteKkit.cpp.o CMakeFiles/kinetics.dir/ReadCspace.cpp.o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o CMakeFiles/kinetics.dir/testKinetics.cpp.o /usr/bin/ranlib libkinetics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 90%] Built target kinetics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SynHandlerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/GraupnerBrunel2012CaPlasticitySynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/Synapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/Synapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 93%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 93%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/testSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose/CMakeFiles/moosepython.dir/DependInfo.cmake --color= Scanning dependencies of target moosepython make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 95%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp: In function 'PyObject* moose_Id_richCompare(_Id*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:703:13: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:705:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 95%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/mfield.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/mfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/pymooseinit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/pymooseinit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/pymooseinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/melement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/melement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_getattro(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:621:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_True); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:624:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_False); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_setDestField(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1394:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1396:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* setDestFinfo(ObjId, std::__cxx11::string, PyObject*, std::__cxx11::string)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1533:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1535:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_richcompare(_ObjId*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1845:17: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1847:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1869:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1871:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1874:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1876:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1879:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1881:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1497:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = short int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1500:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1503:85: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1506:93: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1509:94: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1512:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1515:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1518:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1521:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1524:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1552:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1554:80: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1559:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1567:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1569:79: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1578:101: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1580:88: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1602:73: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1623:76: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = char; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1636:78: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-64.h:1199:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/c++/7/x86_64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/x86_64-redhat-linux/bits/c++config.h:2494, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:260:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-64.h:1221:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /usr/include/c++/7/x86_64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/x86_64-redhat-linux/bits/c++config.h:2494, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:201:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 97%] Building CXX object pymoose/CMakeFiles/moosepython.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/PyRun.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/PyRun.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 97%] Linking CXX static library libmoosepython.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -P CMakeFiles/moosepython.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -E cmake_link_script CMakeFiles/moosepython.dir/link.txt --verbose=1 /usr/bin/ar qc libmoosepython.a CMakeFiles/moosepython.dir/vec.cpp.o CMakeFiles/moosepython.dir/mfield.cpp.o CMakeFiles/moosepython.dir/pymooseinit.cpp.o CMakeFiles/moosepython.dir/melement.cpp.o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o CMakeFiles/moosepython.dir/PyRun.cpp.o /usr/bin/ranlib libmoosepython.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 97%] Built target moosepython make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 24%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ /usr/bin/make -f CMakeFiles/copy_python_files.dir/build.make CMakeFiles/copy_python_files.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/copy_python_files.dir/DependInfo.cmake --color= Scanning dependencies of target copy_python_files make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/copy_python_files.dir/build.make CMakeFiles/copy_python_files.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Copying python files to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/python /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target copy_python_files make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples/CMakeFiles/examples.dir/DependInfo.cmake --color= Scanning dependencies of target examples make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object examples/CMakeFiles/examples.dir/Example.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here [-Wreorder] Example::Example() ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object examples/CMakeFiles/examples.dir/Ex.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Ex.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Ex.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX static library libexamples.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -P CMakeFiles/examples.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/examples.dir/link.txt --verbose=1 /usr/bin/ar qc libexamples.a CMakeFiles/examples.dir/Example.cpp.o CMakeFiles/examples.dir/Ex.cpp.o /usr/bin/ranlib libexamples.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target examples make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/cmake -P 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -DMOOSE_LIB -o CMakeFiles/libmoose.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX static library libmoose.a /usr/bin/cmake -P CMakeFiles/libmoose.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/libmoose.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose.a CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/ranlib libmoose.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target libmoose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/moose.bin.dir/DependInfo.cmake --color= Scanning dependencies of target moose.bin make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:78: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'PyObject* to_py(void*, char)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:392:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:394:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'void init_moose()': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2768:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&IdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2778:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&ObjIdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2788:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_LookupField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2795:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_ElementField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2807:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_DestField); ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX shared module python/moose/_moose.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython2.7 -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + /usr/bin/python2 setup.py build '--executable=/usr/bin/python2 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + mkdir -p build3 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python3 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib64/libhdf5_hl.so/usr/lib64/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib64/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python3 (found version "3.6.1") -- Found NumPy: version "1.13.1" /usr/lib64/python3.6/site-packages/numpy/core/include -- Checking for module 'python3' -- Found python3, version 3.6 Python include dir: /usr/include/python3.6m Python libraries: python3.6m Python executable: /usr/bin/python3 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Scanning dependencies of target intfire make[2]: Leaving directory 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basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Element.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Element.cpp make[2]: Leaving directory 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/GlobalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/ExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/ExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/LocalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/LocalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Eref.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Eref.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Finfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DestFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/DestFinfo.cpp make[2]: Leaving directory 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-fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IzhIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 6%] Building CXX object intfire/CMakeFiles/intfire.dir/LIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/LIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/LIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/QIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/testIntFire.cpp.o -c 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CMakeFiles/intfire.dir/testIntFire.cpp.o /usr/bin/ranlib libintfire.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 7%] Built target intfire make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SrcFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SrcFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 9%] Building CXX object basecode/CMakeFiles/basecode.dir/ValueFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SharedFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Building CXX object msg/CMakeFiles/msg.dir/Msg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/Msg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/Msg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/DiagonalMsg.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ObjId.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ObjId.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/global.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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basecode/CMakeFiles/basecode.dir/SetGet.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SetGet.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SetGet.cpp make[2]: Leaving directory 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 14%] Building CXX object basecode/CMakeFiles/basecode.dir/SparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/doubleEq.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/doubleEq.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 13%] Building CXX object msg/CMakeFiles/msg.dir/SingleMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SingleMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SingleMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/SparseMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SparseMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToOneDataIndexMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wunused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Scanning dependencies of target shell make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o CMakeFiles/msg.dir/OneToOneMsg.cpp.o CMakeFiles/msg.dir/SingleMsg.cpp.o CMakeFiles/msg.dir/SparseMsg.cpp.o CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o CMakeFiles/msg.dir/testMsg.cpp.o /usr/bin/ranlib libmsg.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Built target msg make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum/CMakeFiles/randnum.dir/DependInfo.cmake --color= Scanning dependencies of target randnum make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Binomial.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/BinomialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/BinomialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/Exponential.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellCopy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 19%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Gamma.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Gamma.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellThreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/GammaRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/GammaRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp: In static member function 'static double Normal::aliasMethod()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp:310:50: warning: 'uniform_prime' may be used uninitialized in this function [-Wmaybe-uninitialized] v_num = (unsigned long)(d*uniform*uniform*uniform_prime); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/LoadModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 22%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/NormalRng.cpp.o -c 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Poisson.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Poisson.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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randnum/CMakeFiles/randnum.dir/Probability.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Probability.cpp.o -c 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/RandGenerator.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/RandGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c 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--verbose=1 /usr/bin/ar qc librandnum.a CMakeFiles/randnum.dir/Binomial.cpp.o CMakeFiles/randnum.dir/BinomialRng.cpp.o CMakeFiles/randnum.dir/Exponential.cpp.o CMakeFiles/randnum.dir/ExponentialRng.cpp.o CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Built target randnum make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake --color= Scanning dependencies of target scheduling make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 22%] Building CXX object shell/CMakeFiles/shell.dir/Neutral.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Neutral.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Neutral.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 26%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp: In function 'void testClock()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake --color= Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libshell.a CMakeFiles/shell.dir/Shell.cpp.o CMakeFiles/shell.dir/ShellCopy.cpp.o CMakeFiles/shell.dir/ShellThreads.cpp.o CMakeFiles/shell.dir/LoadModels.cpp.o CMakeFiles/shell.dir/SaveModels.cpp.o CMakeFiles/shell.dir/Neutral.cpp.o CMakeFiles/shell.dir/Wildcard.cpp.o CMakeFiles/shell.dir/testShell.cpp.o /usr/bin/ranlib libshell.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target shell make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SpikeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentDataHolder.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/RandSpike.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 31%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Arith.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 31%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Mstring.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Mstring.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/InputVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TableBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 40%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/setupenv.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/setupenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 40%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/numutil.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/numutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object utility/CMakeFiles/utility.dir/Annotator.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Annotator.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/Annotator.cpp make[2]: 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CMakeFiles/utility.dir/setupenv.cpp.o CMakeFiles/utility.dir/numutil.cpp.o CMakeFiles/utility.dir/Annotator.cpp.o CMakeFiles/utility.dir/Vec.cpp.o /usr/bin/ranlib libutility.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 42%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 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Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 45%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 45%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 47%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 47%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml/CMakeFiles/moose_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target moose_sbml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 49%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 49%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 49%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 49%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 49%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 50%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 50%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 50%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 52%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 52%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 54%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 54%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 56%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 56%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 58%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 58%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/SteadyState.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode 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hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode 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hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 63%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 63%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/FastMatrixElim.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/testDiffusion.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device/CMakeFiles/device.dir/DependInfo.cmake --color= Scanning dependencies of target device make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PulseGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PulseGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/DiffAmp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/RC.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/RC.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Linking CXX static library libdevice.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/cmake -P CMakeFiles/device.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/cmake -E cmake_link_script CMakeFiles/device.dir/link.txt --verbose=1 /usr/bin/ar qc libdevice.a CMakeFiles/device.dir/PulseGen.cpp.o CMakeFiles/device.dir/DiffAmp.cpp.o CMakeFiles/device.dir/PIDController.cpp.o CMakeFiles/device.dir/RC.cpp.o /usr/bin/ranlib libdevice.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Built target device make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SymCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 70%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/GapJunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/GapJunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 70%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/NMDAChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 78%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IzhikevichNrn.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 78%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Leakage.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 78%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/DifShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/DifShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 79%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VectorTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VectorTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 79%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovRateTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 80%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 80%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 80%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovGslSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 81%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 81%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 82%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake --color= Scanning dependencies of target benchmarks make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 83%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/benchmarks.cpp.o -c 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cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 84%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 82%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches 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kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Pool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SynHandlerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/CplxEnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Enz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Enz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/testSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 92%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 92%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose/CMakeFiles/moosepython.dir/DependInfo.cmake --color= Scanning dependencies of target moosepython make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 93%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 93%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 95%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 94%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/mfield.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/mfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 95%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/pymooseinit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/pymooseinit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/pymooseinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 96%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 97%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/copy_python_files.dir/DependInfo.cmake --color= Scanning dependencies of target copy_python_files make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/copy_python_files.dir/build.make CMakeFiles/copy_python_files.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Copying python files to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/python /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/python make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Built target copy_python_files make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples/CMakeFiles/examples.dir/DependInfo.cmake --color= Scanning dependencies of target examples make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Building CXX object examples/CMakeFiles/examples.dir/Example.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here [-Wreorder] Example::Example() ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object examples/CMakeFiles/examples.dir/Ex.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Ex.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Ex.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Linking CXX static library libexamples.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/cmake -P CMakeFiles/examples.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/examples.dir/link.txt --verbose=1 /usr/bin/ar qc libexamples.a CMakeFiles/examples.dir/Example.cpp.o CMakeFiles/examples.dir/Ex.cpp.o /usr/bin/ranlib libexamples.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Built target examples make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/libmoose.dir/DependInfo.cmake --color= Scanning dependencies of target libmoose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object pymoose/CMakeFiles/moosepython.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/melement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/_moose.dir/DependInfo.cmake --color= Scanning dependencies of target _moose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib64/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX shared module python/moose/_moose.cpython-36m-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.cpython-36m-x86_64-linux-gnu.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython3.6m -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.cpython-36m-x86_64-linux-gnu.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.c9ArKf + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 ++ dirname /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + install -D build2/moose.bin /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/bin/moose ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build2/python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + /usr/bin/python2 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 --install-lib=/usr/lib64/python2.7/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/_moose.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/genesis/_main.py to _main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/genesis/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/NeuroML.py to NeuroML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/NetworkML.py to NetworkML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/MorphML.py to MorphML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/neuroml/ChannelML.py to ChannelML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/kkit/visualizer.py to visualizer.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/kkit/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/writekkit.py to writekkit.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/verification_utils.py to verification_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/sim_utils.py to sim_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/recording.py to recording.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/print_utils.py to print_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/plot_utils.py to plot_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/optimizer_interface.py to optimizer_interface.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/moose_constants.py to moose_constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/moose_config.py to moose_config.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/moose.py to moose.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/methods_utils.py to methods_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/hdfutil.py to hdfutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/graphutil.py to graphutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/graph_utils.py to graph_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/alternate.py to alternate.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur/rmoogli.py to rmoogli.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur/rdesigneur.py to rdesigneur.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/rdesigneur/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl/main.py to main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/libmumbl/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpq2TXsY.py' /usr/bin/python2 -O /tmp/tmpq2TXsY.py removing /tmp/tmpq2TXsY.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose-3.0.2-py2.7.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/_moose.so ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + pushd build3/python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 --install-lib=/usr/lib64/python3.6/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/_moose.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/genesis/_main.py to _main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/genesis/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/NeuroML.py to NeuroML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/NetworkML.py to NetworkML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/MorphML.py to MorphML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/neuroml/ChannelML.py to ChannelML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/kkit/visualizer.py to visualizer.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/kkit/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/writekkit.py to writekkit.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/verification_utils.py to verification_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/sim_utils.py to sim_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/recording.py to recording.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/print_utils.py to print_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/plot_utils.py to plot_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/optimizer_interface.py to optimizer_interface.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/moose_constants.py to moose_constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/moose_config.py to moose_config.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/moose.py to moose.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/methods_utils.py to methods_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/hdfutil.py to hdfutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/graphutil.py to graphutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/graph_utils.py to graph_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/constants.py to constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/alternate.py to alternate.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur/rmoogli.py to rmoogli.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur/rdesigneur.py to rdesigneur.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/rdesigneur/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl/util.py to util.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl/main.py to main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/libmumbl/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmpjfy6zinn.py' /usr/bin/python3 /tmp/tmpjfy6zinn.py removing /tmp/tmpjfy6zinn.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose-3.0.2-py3.6.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/_moose.cpython-36m-x86_64-linux-gnu.so ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m --build-id-seed 3.0.2-0.13.fc27.beta.2.git0e12e41 --unique-debug-suffix -3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 --unique-debug-src-base moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages/moose/_moose.cpython-36m-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages/moose/_moose.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/bin/moose /usr/lib/rpm/sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. 7146 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib/debug/usr/lib64/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iDcXvO + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + checksec --file /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/bin/moose WARNING: 'sysctl' not found! It's required for most checks. WARNING: 'openssl' not found! It's required for most checks. WARNING: 'ps' not found! It's required for most checks. WARNING: Not all necessary commands found. Some tests might not work! RELRO STACK CANARY NX PIE RPATH RUNPATH FORTIFY Fortified Fortifiable FILE Full RELRO  Canary found  NX enabled  PIE enabled  No RPATH  No RUNPATH  Yes 2 7 /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/bin/moose + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python2.7/site-packages + /usr/bin/python2 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/lib64/python3.6/site-packages + /usr/bin/python3 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + exit 0 Processing files: moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iWNHsy + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2Y09ri + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + exit 0 Provides: moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose(x86-64) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) libhdf5.so.10()(64bit) libhdf5_hl.so.10()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmuparser.so.2()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtinyxml.so.0()(64bit) libxml2.so.2()(64bit) rtld(GNU_HASH) Processing files: python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.24YAT2 + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.StFgmN + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + exit 0 Provides: python-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python-moose(x86-64) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose(x86-64) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2.7dist(moose) = 3.0.2 python2dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) libhdf5.so.10()(64bit) libhdf5_hl.so.10()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmuparser.so.2()(64bit) libpython2.7.so.1.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtinyxml.so.0()(64bit) libxml2.so.2()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-moose < 3.0.2-0.13.fc27.beta.2.git0e12e41 Processing files: python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8Xf6aP Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4hqN0Q + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/doc/moose + exit 0 + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64/usr/share/licenses/moose + exit 0 Provides: python3-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose(x86-64) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3.6dist(moose) = 3.0.2 python3dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) libhdf5.so.10()(64bit) libhdf5_hl.so.10()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmuparser.so.2()(64bit) libpython3.6m.so.1.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtinyxml.so.0()(64bit) libxml2.so.2()(64bit) python(abi) = 3.6 rtld(GNU_HASH) Processing files: moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 Provides: debuginfo(build-id) = 10a3bf76e4a44f6b8f3ab4d651b0de1251acd932 debuginfo(build-id) = dea91b917b0de0097b4fa6428c006352c7b45178 debuginfo(build-id) = f3ed94a5ceb7f5ca34726419bce16229a087df08 moose-debuginfo = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose-debuginfo(x86-64) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 Wrote: /builddir/build/RPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64.rpm Wrote: /builddir/build/RPMS/python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64.rpm Wrote: /builddir/build/RPMS/moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.gnDEXZ + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.x86_64 + exit 0 Finish: rpmbuild moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Finish: build phase for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm INFO: Done(intermediate-srpm/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm) Config(child) 24 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run