Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c162' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10317686-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.6
PID: 13718
Logging PID: 13720
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10317686,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '97a2bcabf3d1dc26cd15cea6826845a3bedc6cbb',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/fmt12/bout++',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bout++',
 'package_version': '5.2.0-11',
 'project_dirname': 'fmt12',
 'project_name': 'fmt12',
 'project_owner': 'davidsch',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/davidsch/fmt12/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'davidsch/fmt12--davidsch',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 1,
 'submitter': 'davidsch',
 'tags': [],
 'task_id': '10317686-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/davidsch/fmt12/bout++ /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++ --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/fmt12/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++'...

Running: git checkout 97a2bcabf3d1dc26cd15cea6826845a3bedc6cbb --

cmd: ['git', 'checkout', '97a2bcabf3d1dc26cd15cea6826845a3bedc6cbb', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++
rc: 0
stdout: 
stderr: Note: switching to '97a2bcabf3d1dc26cd15cea6826845a3bedc6cbb'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 97a2bca automatic import of bout++

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading BOUT++-v5.2.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o BOUT++-v5.2.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/davidsch/fmt12/bout++/BOUT++-v5.2.0.tar.gz/md5/a12adf302b00dbb7d05e4c71cb47c17e/BOUT++-v5.2.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 14.3M  100 14.3M    0     0  68.0M      0 --:--:-- --:--:-- --:--:-- 67.8M
INFO: Reading stdout from command: md5sum BOUT++-v5.2.0.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776077438.297492 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776077438.297492 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++/bout++.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.7
INFO: Mock Version: 6.7
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776077438.297492/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-a605f15e-b4d2-4c44-ae6d-80565db2da37
INFO: Checking that 7802854ce3f7b8c5dcfe862645d3632ef9a474f3f2792cc4a88eb70e7b48aa9a image matches host's architecture
INFO: Copy content of container 7802854ce3f7b8c5dcfe862645d3632ef9a474f3f2792cc4a88eb70e7b48aa9a to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776077438.297492/root
INFO: mounting 7802854ce3f7b8c5dcfe862645d3632ef9a474f3f2792cc4a88eb70e7b48aa9a with podman image mount
INFO: image 7802854ce3f7b8c5dcfe862645d3632ef9a474f3f2792cc4a88eb70e7b48aa9a as /var/lib/containers/storage/overlay/35aa5c4e9aea93d4cc8f8a1dba23127202ef9c511665e8c784fefb7ebb13039b/merged
INFO: umounting image 7802854ce3f7b8c5dcfe862645d3632ef9a474f3f2792cc4a88eb70e7b48aa9a (/var/lib/containers/storage/overlay/35aa5c4e9aea93d4cc8f8a1dba23127202ef9c511665e8c784fefb7ebb13039b/merged) with podman image umount
INFO: Removing image mock-bootstrap-a605f15e-b4d2-4c44-ae6d-80565db2da37
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1776077438.297492/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-5.fc45.x86_64
  rpm-sequoia-1.10.1-1.fc45.x86_64
  dnf5-5.4.0.0-6.fc45.x86_64
  dnf5-plugins-5.4.0.0-6.fc45.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  67.9 KiB/s |  38.1 KiB |  00m01s
 Copr repository                        100% |   3.4 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                      Repository      Size
Installing group/module packages:
 bash                              x86_64 0:5.3.9-3.fc44               fedora       8.5 MiB
 bzip2                             x86_64 0:1.0.8-23.fc44              fedora      95.0 KiB
 coreutils                         x86_64 0:9.10-3.fc45                fedora       5.6 MiB
 cpio                              x86_64 0:2.15-9.fc44                fedora       1.1 MiB
 diffutils                         x86_64 0:3.12-5.fc44                fedora       1.6 MiB
 fedora-release-common             noarch 0:45-0.5                     fedora       4.2 KiB
 findutils                         x86_64 1:4.10.0-7.fc44              fedora       1.9 MiB
 gawk                              x86_64 0:5.4.0-2.fc45               fedora       2.2 MiB
 glibc-minimal-langpack            x86_64 0:2.43.9000-8.fc45           fedora       0.0   B
 grep                              x86_64 0:3.12-3.fc44                fedora       1.0 MiB
 gzip                              x86_64 0:1.14-2.fc44                fedora     401.6 KiB
 info                              x86_64 0:7.3-1.fc45                 fedora     372.4 KiB
 patch                             x86_64 0:2.8-4.fc44                 fedora     226.6 KiB
 redhat-rpm-config                 noarch 0:344-1.fc45                 fedora     183.7 KiB
 rpm-build                         x86_64 0:6.0.1-5.fc45               fedora     294.6 KiB
 sed                               x86_64 0:4.9-8.fc45                 fedora     857.2 KiB
 shadow-utils                      x86_64 2:4.19.3-1.fc45              fedora       4.0 MiB
 tar                               x86_64 2:1.35-8.fc44                fedora       3.0 MiB
 unzip                             x86_64 0:6.0-69.fc44                fedora     445.8 KiB
 util-linux                        x86_64 0:2.42-7.fc45                fedora       3.6 MiB
 which                             x86_64 0:2.23-4.fc44                fedora      83.4 KiB
 xz                                x86_64 1:5.8.3-1.fc45               fedora       1.4 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.7-1.fc45               fedora       3.5 KiB
 add-determinism                   x86_64 0:0.7.3-2.fc45               fedora       2.2 MiB
 alternatives                      x86_64 0:1.33-5.fc44                fedora      62.1 KiB
 ansible-srpm-macros               noarch 0:1-20.1.fc44                fedora      35.7 KiB
 audit-libs                        x86_64 0:4.1.4-1.fc45               fedora     390.5 KiB
 binutils                          x86_64 0:2.46.50-7.fc45             fedora      28.2 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45               fedora       1.2 KiB
 bzip2-libs                        x86_64 0:1.0.8-23.fc44              fedora      80.5 KiB
 ca-certificates                   noarch 0:2025.2.80_v9.0.304-7.fc45  fedora       2.7 MiB
 cmake-srpm-macros                 noarch 0:4.3.0-1.fc45               fedora     524.0   B
 coreutils-common                  x86_64 0:9.10-3.fc45                fedora      10.7 MiB
 crypto-policies                   noarch 0:20251128-3.git19878fe.fc44 fedora     132.6 KiB
 curl                              x86_64 0:8.20.0~rc1-1.fc45          fedora     482.7 KiB
 cyrus-sasl-lib                    x86_64 0:2.1.28-35.fc44             fedora       2.3 MiB
 debugedit                         x86_64 0:5.3-2.fc45                 fedora     220.8 KiB
 dwz                               x86_64 0:0.16-3.fc44                fedora     290.9 KiB
 ed                                x86_64 0:1.22.5-2.fc45              fedora     149.7 KiB
 efi-srpm-macros                   noarch 0:6-6.fc44                   fedora      40.2 KiB
 elfutils                          x86_64 0:0.194-5.fc45               fedora       2.9 MiB
 elfutils-debuginfod-client        x86_64 0:0.194-5.fc45               fedora      83.7 KiB
 elfutils-default-yama-scope       noarch 0:0.194-5.fc45               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0:0.194-5.fc45               fedora       1.1 MiB
 elfutils-libs                     x86_64 0:0.194-5.fc45               fedora     715.3 KiB
 erlang-srpm-macros                noarch 0:0.3.11-1.fc45              fedora       1.9 KiB
 fedora-gpg-keys                   noarch 0:45-0.1                     fedora     133.4 KiB
 fedora-release                    noarch 0:45-0.5                     fedora       0.0   B
 fedora-release-identity-basic     noarch 0:45-0.5                     fedora     664.0   B
 fedora-repos                      noarch 0:45-0.1                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 0:45-0.1                     fedora       2.2 KiB
 file                              x86_64 0:5.47-1.fc45                fedora     101.2 KiB
 file-libs                         x86_64 0:5.47-1.fc45                fedora      12.2 MiB
 filesystem                        x86_64 0:3.18-56.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch 0:3.18-56.fc45               fedora      38.2 KiB
 fonts-srpm-macros                 noarch 1:5.0.0-3.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-4.fc44               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-16.fc44                fedora     144.0   B
 gap-srpm-macros                   noarch 0:2-2.fc44                   fedora       2.1 KiB
 gdb-minimal                       x86_64 0:17.1-5.fc45                fedora      14.2 MiB
 gdbm-libs                         x86_64 1:1.23-11.fc44               fedora     129.6 KiB
 ghc-srpm-macros                   noarch 0:1.10-1.fc44                fedora     792.0   B
 glibc                             x86_64 0:2.43.9000-8.fc45           fedora       7.0 MiB
 glibc-common                      x86_64 0:2.43.9000-8.fc45           fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 0:2.43.9000-8.fc45           fedora       7.7 MiB
 gmp                               x86_64 1:6.3.0-5.fc44               fedora     815.2 KiB
 gnat-srpm-macros                  noarch 0:7-2.fc44                   fedora       1.0 KiB
 gnulib-l10n                       noarch 0:20241231-2.fc44            fedora     655.0 KiB
 gnupg2                            x86_64 0:2.4.9-5.fc44               fedora       6.5 MiB
 gnupg2-dirmngr                    x86_64 0:2.4.9-5.fc44               fedora     633.9 KiB
 gnupg2-gpg-agent                  x86_64 0:2.4.9-5.fc44               fedora     682.5 KiB
 gnupg2-gpgconf                    x86_64 0:2.4.9-5.fc44               fedora     249.7 KiB
 gnupg2-keyboxd                    x86_64 0:2.4.9-5.fc44               fedora     201.2 KiB
 gnupg2-verify                     x86_64 0:2.4.9-5.fc44               fedora     360.3 KiB
 gnutls                            x86_64 0:3.8.12-1.fc45              fedora       3.7 MiB
 go-srpm-macros                    noarch 0:3.8.0-2.fc44               fedora      61.9 KiB
 gpgverify                         noarch 0:2.2-4.fc44                 fedora       8.7 KiB
 ima-evm-utils-libs                x86_64 0:1.6.2-10.fc45              fedora      60.6 KiB
 jansson                           x86_64 0:2.14-4.fc44                fedora      88.9 KiB
 java-srpm-macros                  noarch 0:1-8.fc44                   fedora     870.0   B
 json-c                            x86_64 0:0.18-8.fc44                fedora      82.6 KiB
 kernel-srpm-macros                noarch 0:1.0-29.fc45                fedora       1.9 KiB
 keyutils-libs                     x86_64 0:1.6.3-7.fc44               fedora      54.2 KiB
 krb5-libs                         x86_64 0:1.22.2-4.fc45              fedora       2.4 MiB
 libacl                            x86_64 0:2.3.2-6.fc44               fedora      35.8 KiB
 libarchive                        x86_64 0:3.8.6-1.fc45               fedora     995.2 KiB
 libassuan                         x86_64 0:2.5.7-5.fc44               fedora     163.8 KiB
 libattr                           x86_64 0:2.5.2-8.fc44               fedora      24.3 KiB
 libblkid                          x86_64 0:2.42-7.fc45                fedora     282.2 KiB
 libbrotli                         x86_64 0:1.2.0-3.fc44               fedora     865.0 KiB
 libcap                            x86_64 0:2.78-1.fc45                fedora     212.1 KiB
 libcap-ng                         x86_64 0:0.9.3-1.fc45               fedora      68.8 KiB
 libcbor                           x86_64 0:0.13.0-2.fc44              fedora      79.5 KiB
 libcom_err                        x86_64 0:1.47.4-1.fc45              fedora      63.0 KiB
 libcurl                           x86_64 0:8.20.0~rc1-1.fc45          fedora       1.0 MiB
 libeconf                          x86_64 0:0.7.9-3.fc44               fedora      64.8 KiB
 libevent                          x86_64 0:2.1.12-17.fc44             fedora     978.7 KiB
 libfdisk                          x86_64 0:2.42-7.fc45                fedora     388.2 KiB
 libffi                            x86_64 0:3.5.2-2.fc44               fedora      87.7 KiB
 libfido2                          x86_64 0:1.16.0-5.fc44              fedora     246.4 KiB
 libfsverity                       x86_64 0:1.7-1.fc45                 fedora      28.4 KiB
 libgcc                            x86_64 0:16.0.1-0.10.fc45           fedora     270.7 KiB
 libgcrypt                         x86_64 0:1.12.1-1.fc45              fedora       1.7 MiB
 libgomp                           x86_64 0:16.0.1-0.10.fc45           fedora     577.2 KiB
 libgpg-error                      x86_64 0:1.59-1.fc45                fedora     946.4 KiB
 libidn2                           x86_64 0:2.3.8-3.fc44               fedora     556.4 KiB
 libksba                           x86_64 0:1.6.8-1.fc45               fedora     421.9 KiB
 liblastlog2                       x86_64 0:2.42-7.fc45                fedora      41.6 KiB
 libmount                          x86_64 0:2.42-7.fc45                fedora     400.8 KiB
 libnghttp2                        x86_64 0:1.68.1-1.fc45              fedora     166.2 KiB
 libnghttp3                        x86_64 0:1.15.0-1.fc44              fedora     159.2 KiB
 libpkgconf                        x86_64 0:2.5.1-1.fc45               fedora      90.1 KiB
 libpsl                            x86_64 0:0.21.5-7.fc44              fedora      76.3 KiB
 libselinux                        x86_64 0:3.10-1.fc44                fedora     201.0 KiB
 libselinux-utils                  x86_64 0:3.10-1.fc44                fedora     305.7 KiB
 libsemanage                       x86_64 0:3.10-1.fc44                fedora     312.3 KiB
 libsepol                          x86_64 0:3.10-1.fc44                fedora     870.0 KiB
 libsmartcols                      x86_64 0:2.42-7.fc45                fedora     192.4 KiB
 libssh                            x86_64 0:0.12.0-1.fc45              fedora     719.1 KiB
 libssh-config                     noarch 0:0.12.0-1.fc45              fedora     277.0   B
 libstdc++                         x86_64 0:16.0.1-0.10.fc45           fedora       2.9 MiB
 libtasn1                          x86_64 0:4.21.0-1.fc45              fedora     180.6 KiB
 libtool-ltdl                      x86_64 0:2.5.4-10.fc44              fedora      70.0 KiB
 libunistring                      x86_64 0:1.1-11.fc44                fedora       1.7 MiB
 libusb1                           x86_64 0:1.0.29-5.fc44              fedora     175.2 KiB
 libuuid                           x86_64 0:2.42-7.fc45                fedora      37.2 KiB
 libverto                          x86_64 0:0.3.2-12.fc44              fedora      25.3 KiB
 libxcrypt                         x86_64 0:4.5.2-3.fc44               fedora     293.2 KiB
 libxml2                           x86_64 0:2.12.10-6.fc44             fedora       1.8 MiB
 libzstd                           x86_64 0:1.5.7-5.fc44               fedora     956.1 KiB
 linkdupes                         x86_64 0:0.7.3-2.fc45               fedora     780.9 KiB
 lua-libs                          x86_64 0:5.5.0-1.fc45               fedora     297.9 KiB
 lua-srpm-macros                   noarch 0:1-17.fc44                  fedora       1.3 KiB
 lz4-libs                          x86_64 0:1.10.0-4.fc44              fedora     157.3 KiB
 mpfr                              x86_64 0:4.2.2-3.fc44               fedora     849.1 KiB
 ncurses-base                      noarch 0:6.6-1.fc44                 fedora     329.7 KiB
 ncurses-libs                      x86_64 0:6.6-1.fc44                 fedora     968.9 KiB
 nettle                            x86_64 0:3.10.1-3.fc44              fedora     794.3 KiB
 ngtcp2                            x86_64 0:1.21.0-1.fc45              fedora     330.2 KiB
 ngtcp2-crypto-ossl                x86_64 0:1.21.0-1.fc45              fedora      51.6 KiB
 npth                              x86_64 0:1.8-4.fc44                 fedora      49.5 KiB
 ocaml-srpm-macros                 noarch 0:11-3.fc44                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 0:2-21.fc44                  fedora     112.0   B
 openldap                          x86_64 0:2.6.13-1.fc45              fedora     669.9 KiB
 openssl-libs                      x86_64 1:3.5.5-1.fc44               fedora       9.2 MiB
 p11-kit                           x86_64 0:0.26.2-1.fc45              fedora       2.6 MiB
 p11-kit-trust                     x86_64 0:0.26.2-1.fc45              fedora     478.3 KiB
 package-notes-srpm-macros         noarch 0:0.17-3.fc45                fedora       1.6 KiB
 pam-libs                          x86_64 0:1.7.2-1.fc44               fedora     130.5 KiB
 pcre2                             x86_64 0:10.47-1.fc44.1             fedora     718.6 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc44.1             fedora     281.9 KiB
 perl-srpm-macros                  noarch 0:1-61.fc44                  fedora     861.0   B
 pkgconf                           x86_64 0:2.5.1-1.fc45               fedora      92.7 KiB
 pkgconf-m4                        noarch 0:2.5.1-1.fc45               fedora      14.3 KiB
 pkgconf-pkg-config                x86_64 0:2.5.1-1.fc45               fedora     989.0   B
 policycoreutils                   x86_64 0:3.10-3.fc45                fedora     884.5 KiB
 popt                              x86_64 0:1.19-10.fc44               fedora     132.6 KiB
 publicsuffix-list-dafsa           noarch 0:20260116-1.fc44            fedora      70.4 KiB
 pyproject-srpm-macros             noarch 0:1.19.0-1.fc45              fedora       1.9 KiB
 python-srpm-macros                noarch 0:3.14-12.fc45               fedora      51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-2.fc44             fedora     500.0   B
 qt6-srpm-macros                   noarch 0:6.10.3-1.fc45              fedora     472.0   B
 readline                          x86_64 0:8.3-4.fc44                 fedora     519.5 KiB
 redhat-systemd-presets            noarch 0:102-1.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch 0:102-1.fc45                 fedora      16.6 KiB
 rpm                               x86_64 0:6.0.1-5.fc45               fedora       3.1 MiB
 rpm-build-libs                    x86_64 0:6.0.1-5.fc45               fedora     276.3 KiB
 rpm-libs                          x86_64 0:6.0.1-5.fc45               fedora     961.2 KiB
 rpm-plugin-selinux                x86_64 0:6.0.1-5.fc45               fedora      11.9 KiB
 rpm-sequoia                       x86_64 0:1.10.1-1.fc45              fedora       2.4 MiB
 rpm-sign-libs                     x86_64 0:6.0.1-5.fc45               fedora      39.6 KiB
 rust-srpm-macros                  noarch 0:28.4-3.fc44                fedora       5.5 KiB
 selinux-policy                    noarch 0:43.6-1.fc45                fedora      32.0 KiB
 selinux-policy-targeted           noarch 0:43.6-1.fc45                fedora      18.6 MiB
 setup                             noarch 0:2.15.0-29.fc45             fedora     724.9 KiB
 sqlite-libs                       x86_64 0:3.52.0-1.fc45              fedora       1.6 MiB
 systemd-libs                      x86_64 0:260.1-2.fc45               fedora       2.5 MiB
 systemd-standalone-sysusers       x86_64 0:260.1-2.fc45               fedora     841.2 KiB
 tpm2-tss                          x86_64 0:4.1.3-9.fc44               fedora       1.6 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.2-2.fc44               fedora       8.3 KiB
 util-linux-core                   x86_64 0:2.42-7.fc45                fedora       1.5 MiB
 xxhash-libs                       x86_64 0:0.8.3-4.fc44               fedora      94.0 KiB
 xz-libs                           x86_64 1:5.8.3-1.fc45               fedora     217.7 KiB
 zig-srpm-macros                   noarch 0:1-8.fc44                   fedora       1.3 KiB
 zip                               x86_64 0:3.0-45.fc44                fedora     698.0 KiB
 zlib-ng-compat                    x86_64 0:2.3.3-5.fc45               fedora     165.6 KiB
 zstd                              x86_64 0:1.5.7-5.fc44               fedora     502.4 KiB
Installing groups:
 Buildsystem building group                                                                

Transaction Summary:
 Installing:       187 packages

Total size of inbound packages is 70 MiB. Need to download 0 B.
After this operation, 226 MiB extra will be used (install 226 MiB, remove 0 B).
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--------------------------------------------------------------------------------
[187/187] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
[  1/189] Verify package files          100% | 638.0   B/s | 187.0   B |  00m00s
[  2/189] Prepare transaction           100% |   2.1 KiB/s | 187.0   B |  00m00s
[  3/189] Installing libgcc-0:16.0.1-0. 100% | 133.0 MiB/s | 272.4 KiB |  00m00s
[  4/189] Installing redhat-systemd-pre 100% |   0.0   B/s |   1.5 KiB |  00m00s
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[  6/189] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  7/189] Installing publicsuffix-list- 100% |   0.0   B/s |  71.1 KiB |  00m00s
[  8/189] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  9/189] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[ 10/189] Installing fedora-gpg-keys-0: 100% |  29.6 MiB/s | 182.1 KiB |  00m00s
[ 11/189] Installing fedora-repos-0:45- 100% |   0.0   B/s |   5.7 KiB |  00m00s
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[ 13/189] Installing fedora-release-0:4 100% |  11.0 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/189] Installing setup-0:2.15.0-29. 100% |  32.4 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/189] Installing filesystem-0:3.18- 100% |   1.9 MiB/s | 289.4 KiB |  00m00s
[ 16/189] Installing pkgconf-m4-0:2.5.1 100% |   0.0   B/s |  14.7 KiB |  00m00s
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[ 18/189] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB |  00m00s
[ 19/189] Installing coreutils-common-0 100% | 296.9 MiB/s |  10.7 MiB |  00m00s
[ 20/189] Installing ncurses-base-0:6.6 100% |  57.8 MiB/s | 355.3 KiB |  00m00s
[ 21/189] Installing bash-0:5.3.9-3.fc4 100% | 206.9 MiB/s |   8.5 MiB |  00m00s
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[ 25/189] Installing ncurses-libs-0:6.6 100% | 190.5 MiB/s | 975.4 KiB |  00m00s
[ 26/189] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
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[ 28/189] Installing bzip2-libs-0:1.0.8 100% |  79.7 MiB/s |  81.6 KiB |  00m00s
[ 29/189] Installing libgpg-error-0:1.5 100% |  44.3 MiB/s | 952.3 KiB |  00m00s
[ 30/189] Installing libstdc++-0:16.0.1 100% | 324.3 MiB/s |   2.9 MiB |  00m00s
[ 31/189] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB |  00m00s
[ 32/189] Installing libgcrypt-0:1.12.1 100% | 331.6 MiB/s |   1.7 MiB |  00m00s
[ 33/189] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB |  00m00s
[ 34/189] Installing gmp-1:6.3.0-5.fc44 100% | 266.1 MiB/s | 817.5 KiB |  00m00s
[ 35/189] Installing systemd-libs-0:260 100% | 318.4 MiB/s |   2.5 MiB |  00m00s
[ 36/189] Installing xz-libs-1:5.8.3-1. 100% | 213.7 MiB/s | 218.8 KiB |  00m00s
[ 37/189] Installing libuuid-0:2.42-7.f 100% |  37.3 MiB/s |  38.2 KiB |  00m00s
[ 38/189] Installing libzstd-0:1.5.7-5. 100% | 311.6 MiB/s | 957.4 KiB |  00m00s
[ 39/189] Installing elfutils-libelf-0: 100% | 282.2 MiB/s |   1.1 MiB |  00m00s
[ 40/189] Installing popt-0:1.19-10.fc4 100% |  45.3 MiB/s | 139.3 KiB |  00m00s
[ 41/189] Installing npth-0:1.8-4.fc44. 100% |  49.4 MiB/s |  50.6 KiB |  00m00s
[ 42/189] Installing libblkid-0:2.42-7. 100% | 276.6 MiB/s | 283.2 KiB |  00m00s
[ 43/189] Installing libsepol-0:3.10-1. 100% | 283.5 MiB/s | 871.0 KiB |  00m00s
[ 44/189] Installing sqlite-libs-0:3.52 100% | 320.6 MiB/s |   1.6 MiB |  00m00s
[ 45/189] Installing gnupg2-gpgconf-0:2 100% |  13.7 MiB/s | 251.8 KiB |  00m00s
[ 46/189] Installing libattr-0:2.5.2-8. 100% |  24.7 MiB/s |  25.2 KiB |  00m00s
[ 47/189] Installing libacl-0:2.3.2-6.f 100% |  35.8 MiB/s |  36.6 KiB |  00m00s
[ 48/189] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB |  00m00s
[ 49/189] Installing libselinux-0:3.10- 100% | 197.5 MiB/s | 202.3 KiB |  00m00s
[ 50/189] Installing grep-0:3.12-3.fc44 100% |  43.6 MiB/s |   1.0 MiB |  00m00s
[ 51/189] Installing sed-0:4.9-8.fc45.x 100% |  38.4 MiB/s | 865.4 KiB |  00m00s
[ 52/189] Installing findutils-1:4.10.0 100% |  74.8 MiB/s |   1.9 MiB |  00m00s
[ 53/189] Installing libxcrypt-0:4.5.2- 100% | 144.5 MiB/s | 295.9 KiB |  00m00s
[ 54/189] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB |  00m00s
[ 55/189] Installing libunistring-0:1.1 100% | 289.1 MiB/s |   1.7 MiB |  00m00s
[ 56/189] Installing libidn2-0:2.3.8-3. 100% |  42.3 MiB/s | 562.6 KiB |  00m00s
[ 57/189] Installing crypto-policies-0: 100% |  22.0 MiB/s | 157.7 KiB |  00m00s
[ 58/189] Installing xz-1:5.8.3-1.fc45. 100% |  52.0 MiB/s |   1.4 MiB |  00m00s
[ 59/189] Installing libmount-0:2.42-7. 100% | 196.2 MiB/s | 401.9 KiB |  00m00s
[ 60/189] Installing gnupg2-verify-0:2. 100% |  18.6 MiB/s | 361.7 KiB |  00m00s
[ 61/189] Installing dwz-0:0.16-3.fc44. 100% |  15.9 MiB/s | 292.3 KiB |  00m00s
[ 62/189] Installing mpfr-0:4.2.2-3.fc4 100% | 207.7 MiB/s | 850.8 KiB |  00m00s
[ 63/189] Installing gawk-0:5.4.0-2.fc4 100% |  85.6 MiB/s |   2.2 MiB |  00m00s
[ 64/189] Installing libksba-0:1.6.8-1. 100% | 207.2 MiB/s | 424.4 KiB |  00m00s
[ 65/189] Installing unzip-0:6.0-69.fc4 100% |  23.1 MiB/s | 449.3 KiB |  00m00s
[ 66/189] Installing file-libs-0:5.47-1 100% | 580.5 MiB/s |  12.2 MiB |  00m00s
[ 67/189] Installing file-0:5.47-1.fc45 100% |   5.6 MiB/s | 102.6 KiB |  00m00s
[ 68/189] Installing diffutils-0:3.12-5 100% |  65.5 MiB/s |   1.6 MiB |  00m00s
[ 69/189] Installing libeconf-0:0.7.9-3 100% |  64.9 MiB/s |  66.4 KiB |  00m00s
[ 70/189] Installing libcap-ng-0:0.9.3- 100% |  69.0 MiB/s |  70.6 KiB |  00m00s
[ 71/189] Installing audit-libs-0:4.1.4 100% | 191.9 MiB/s | 393.0 KiB |  00m00s
[ 72/189] Installing pam-libs-0:1.7.2-1 100% | 129.8 MiB/s | 132.9 KiB |  00m00s
[ 73/189] Installing libcap-0:2.78-1.fc 100% |  11.2 MiB/s | 217.2 KiB |  00m00s
[ 74/189] Installing libsemanage-0:3.10 100% | 153.4 MiB/s | 314.1 KiB |  00m00s
[ 75/189] Installing libsmartcols-0:2.4 100% | 188.9 MiB/s | 193.4 KiB |  00m00s
[ 76/189] Installing lua-libs-0:5.5.0-1 100% | 146.2 MiB/s | 299.4 KiB |  00m00s
[ 77/189] Installing json-c-0:0.18-8.fc 100% |  81.9 MiB/s |  83.9 KiB |  00m00s
[ 78/189] Installing libffi-0:3.5.2-2.f 100% |  87.0 MiB/s |  89.1 KiB |  00m00s
[ 79/189] Installing p11-kit-0:0.26.2-1 100% |  92.7 MiB/s |   2.6 MiB |  00m00s
[ 80/189] Installing alternatives-0:1.3 100% |   3.5 MiB/s |  63.6 KiB |  00m00s
[ 81/189] Installing p11-kit-trust-0:0. 100% |  18.0 MiB/s | 480.0 KiB |  00m00s
[ 82/189] Installing ngtcp2-0:1.21.0-1. 100% | 162.0 MiB/s | 331.7 KiB |  00m00s
[ 83/189] Installing openssl-libs-1:3.5 100% | 340.3 MiB/s |   9.2 MiB |  00m00s
[ 84/189] Installing coreutils-0:9.10-3 100% | 126.5 MiB/s |   5.7 MiB |  00m00s
[ 85/189] Installing ca-certificates-0: 100% |   1.4 MiB/s |   2.5 MiB |  00m02s
[ 86/189] Installing gzip-0:1.14-2.fc44 100% |  18.9 MiB/s | 407.1 KiB |  00m00s
[ 87/189] Installing rpm-sequoia-0:1.10 100% | 295.6 MiB/s |   2.4 MiB |  00m00s
[ 88/189] Installing libfsverity-0:1.7- 100% |  28.7 MiB/s |  29.4 KiB |  00m00s
[ 89/189] Installing libevent-0:2.1.12- 100% | 239.9 MiB/s | 982.4 KiB |  00m00s
[ 90/189] Installing systemd-standalone 100% |  41.1 MiB/s | 841.8 KiB |  00m00s
[ 91/189] Installing rpm-libs-0:6.0.1-5 100% | 235.0 MiB/s | 962.8 KiB |  00m00s
[ 92/189] Installing ngtcp2-crypto-ossl 100% |  51.2 MiB/s |  52.5 KiB |  00m00s
[ 93/189] Installing util-linux-core-0: 100% |  58.8 MiB/s |   1.5 MiB |  00m00s
[ 94/189] Installing liblastlog2-0:2.42 100% |   5.3 MiB/s |  43.6 KiB |  00m00s
[ 95/189] Installing zip-0:3.0-45.fc44. 100% |  31.2 MiB/s | 701.9 KiB |  00m00s
[ 96/189] Installing gnupg2-keyboxd-0:2 100% |  28.2 MiB/s | 202.5 KiB |  00m00s
[ 97/189] Installing libpsl-0:0.21.5-7. 100% |  75.6 MiB/s |  77.4 KiB |  00m00s
[ 98/189] Installing tar-2:1.35-8.fc44. 100% | 102.7 MiB/s |   3.0 MiB |  00m00s
[ 99/189] Installing linkdupes-0:0.7.3- 100% |  38.2 MiB/s | 782.3 KiB |  00m00s
[100/189] Installing libselinux-utils-0 100% |  14.9 MiB/s | 320.1 KiB |  00m00s
[101/189] Installing libfdisk-0:2.42-7. 100% | 126.7 MiB/s | 389.3 KiB |  00m00s
[102/189] Installing util-linux-0:2.42- 100% |  74.2 MiB/s |   3.7 MiB |  00m00s
[103/189] Installing policycoreutils-0: 100% |  23.5 MiB/s | 912.9 KiB |  00m00s
[104/189] Installing selinux-policy-0:4 100% |   1.1 MiB/s |  33.6 KiB |  00m00s
[105/189] Installing selinux-policy-tar 100% | 135.4 MiB/s |  14.9 MiB |  00m00s
[106/189] Installing zstd-0:1.5.7-5.fc4 100% |  22.5 MiB/s | 506.0 KiB |  00m00s
[107/189] Installing libxml2-0:2.12.10- 100% |  73.8 MiB/s |   1.8 MiB |  00m00s
[108/189] Installing libusb1-0:1.0.29-5 100% |  15.7 MiB/s | 176.9 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[109/189] Installing tpm2-tss-0:4.1.3-9 100% | 204.1 MiB/s |   1.6 MiB |  00m00s
[110/189] Installing ima-evm-utils-libs 100% |  60.5 MiB/s |  61.9 KiB |  00m00s
[111/189] Installing gnupg2-gpg-agent-0 100% |  23.1 MiB/s | 686.5 KiB |  00m00s
[112/189] Installing nettle-0:3.10.1-3. 100% | 259.6 MiB/s | 797.4 KiB |  00m00s
[113/189] Installing gnutls-0:3.8.12-1. 100% | 311.3 MiB/s |   3.7 MiB |  00m00s
[114/189] Installing bzip2-0:1.0.8-23.f 100% |   5.4 MiB/s |  99.5 KiB |  00m00s
[115/189] Installing add-determinism-0: 100% |  90.9 MiB/s |   2.2 MiB |  00m00s
[116/189] Installing build-reproducibil 100% |   1.5 MiB/s |   1.5 KiB |  00m00s
[117/189] Installing cpio-0:2.15-9.fc44 100% |  48.0 MiB/s |   1.1 MiB |  00m00s
[118/189] Installing ed-0:1.22.5-2.fc45 100% |   7.8 MiB/s | 152.0 KiB |  00m00s
[119/189] Installing patch-0:2.8-4.fc44 100% |  12.4 MiB/s | 228.1 KiB |  00m00s
[120/189] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB |  00m00s
[121/189] Installing libarchive-0:3.8.6 100% | 243.5 MiB/s | 997.2 KiB |  00m00s
[122/189] Installing libgomp-0:16.0.1-0 100% | 282.5 MiB/s | 578.6 KiB |  00m00s
[123/189] Installing libtool-ltdl-0:2.5 100% |  69.5 MiB/s |  71.1 KiB |  00m00s
[124/189] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB |  00m00s
[125/189] Installing cyrus-sasl-lib-0:2 100% |  92.4 MiB/s |   2.3 MiB |  00m00s
[126/189] Installing openldap-0:2.6.13- 100% | 164.5 MiB/s | 673.7 KiB |  00m00s
[127/189] Installing gnupg2-dirmngr-0:2 100% |  21.4 MiB/s | 636.6 KiB |  00m00s
[128/189] Installing gnupg2-0:2.4.9-5.f 100% | 171.3 MiB/s |   6.5 MiB |  00m00s
[129/189] Installing rpm-sign-libs-0:6. 100% |  39.4 MiB/s |  40.3 KiB |  00m00s
[130/189] Installing gpgverify-0:2.2-4. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[131/189] Installing jansson-0:2.14-4.f 100% |  88.2 MiB/s |  90.3 KiB |  00m00s
[132/189] Installing libpkgconf-0:2.5.1 100% |  89.1 MiB/s |  91.3 KiB |  00m00s
[133/189] Installing pkgconf-0:2.5.1-1. 100% |   5.2 MiB/s |  95.2 KiB |  00m00s
[134/189] Installing pkgconf-pkg-config 100% | 104.3 KiB/s |   1.8 KiB |  00m00s
[135/189] Installing xxhash-libs-0:0.8. 100% |  93.2 MiB/s |  95.4 KiB |  00m00s
[136/189] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB |  00m00s
[137/189] Installing libnghttp2-0:1.68. 100% | 163.4 MiB/s | 167.3 KiB |  00m00s
[138/189] Installing libnghttp3-0:1.15. 100% | 156.8 MiB/s | 160.6 KiB |  00m00s
[139/189] Installing keyutils-libs-0:1. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[140/189] Installing libcom_err-0:1.47. 100% |  62.5 MiB/s |  64.0 KiB |  00m00s
[141/189] Installing libverto-0:0.3.2-1 100% |  26.4 MiB/s |  27.1 KiB |  00m00s
[142/189] Installing krb5-libs-0:1.22.2 100% | 239.9 MiB/s |   2.4 MiB |  00m00s
[143/189] Installing libcbor-0:0.13.0-2 100% |  79.0 MiB/s |  80.9 KiB |  00m00s
[144/189] Installing libfido2-0:1.16.0- 100% | 242.1 MiB/s | 247.9 KiB |  00m00s
[145/189] Installing libssh-0:0.12.0-1. 100% | 234.8 MiB/s | 721.2 KiB |  00m00s
[146/189] Installing libcurl-0:8.20.0~r 100% | 255.5 MiB/s |   1.0 MiB |  00m00s
[147/189] Installing curl-0:8.20.0~rc1- 100% |  14.4 MiB/s | 485.3 KiB |  00m00s
[148/189] Installing rpm-0:6.0.1-5.fc45 100% |  55.5 MiB/s |   2.6 MiB |  00m00s
[149/189] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[150/189] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[151/189] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[152/189] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[153/189] Installing tree-sitter-srpm-m 100% |   9.1 MiB/s |   9.3 KiB |  00m00s
[154/189] Installing zig-srpm-macros-0: 100% |   1.8 MiB/s |   1.9 KiB |  00m00s
[155/189] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[156/189] Installing elfutils-default-y 100% | 255.4 KiB/s |   2.0 KiB |  00m00s
[157/189] Installing elfutils-libs-0:0. 100% | 140.1 MiB/s | 717.1 KiB |  00m00s
[158/189] Installing elfutils-debuginfo 100% |   3.1 MiB/s |  86.0 KiB |  00m00s
[159/189] Installing elfutils-0:0.194-5 100% |  82.2 MiB/s |   3.0 MiB |  00m00s
[160/189] Installing binutils-0:2.46.50 100% | 254.7 MiB/s |  28.3 MiB |  00m00s
[161/189] Installing gdb-minimal-0:17.1 100% | 244.7 MiB/s |  14.2 MiB |  00m00s
[162/189] Installing debugedit-0:5.3-2. 100% |  11.5 MiB/s | 224.1 KiB |  00m00s
[163/189] Installing rpm-build-libs-0:6 100% |  38.7 MiB/s | 277.2 KiB |  00m00s
[164/189] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[165/189] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 748.0   B |  00m00s
[166/189] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[167/189] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[168/189] Installing package-notes-srpm 100% |   0.0   B/s |   2.1 KiB |  00m00s
[169/189] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[170/189] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[171/189] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[172/189] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[173/189] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[174/189] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[175/189] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[176/189] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[177/189] Installing rpm-build-0:6.0.1- 100% |  14.8 MiB/s | 303.7 KiB |  00m00s
[178/189] Installing erlang-srpm-macros 100% |   0.0   B/s |   2.5 KiB |  00m00s
[179/189] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[180/189] Installing redhat-rpm-config- 100% |  92.7 MiB/s | 189.9 KiB |  00m00s
[181/189] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[182/189] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[183/189] Installing go-srpm-macros-0:3 100% |  61.6 MiB/s |  63.0 KiB |  00m00s
[184/189] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.4 KiB |  00m00s
[185/189] Installing python-srpm-macros 100% |  51.7 MiB/s |  52.9 KiB |  00m00s
[186/189] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.9 KiB |  00m00s
[187/189] Installing which-0:2.23-4.fc4 100% |   4.4 MiB/s |  85.6 KiB |  00m00s
[188/189] Installing shadow-utils-2:4.1 100% | 100.6 MiB/s |   4.0 MiB |  00m00s
[189/189] Installing info-0:7.3-1.fc45. 100% |  44.2 KiB/s | 372.8 KiB |  00m08s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-1.fc45.noarch
add-determinism-0.7.3-2.fc45.x86_64
alternatives-1.33-5.fc44.x86_64
ansible-srpm-macros-1-20.1.fc44.noarch
audit-libs-4.1.4-1.fc45.x86_64
bash-5.3.9-3.fc44.x86_64
binutils-2.46.50-7.fc45.x86_64
build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch
bzip2-1.0.8-23.fc44.x86_64
bzip2-libs-1.0.8-23.fc44.x86_64
ca-certificates-2025.2.80_v9.0.304-7.fc45.noarch
cmake-srpm-macros-4.3.0-1.fc45.noarch
coreutils-9.10-3.fc45.x86_64
coreutils-common-9.10-3.fc45.x86_64
cpio-2.15-9.fc44.x86_64
crypto-policies-20251128-3.git19878fe.fc44.noarch
curl-8.20.0~rc1-1.fc45.x86_64
cyrus-sasl-lib-2.1.28-35.fc44.x86_64
debugedit-5.3-2.fc45.x86_64
diffutils-3.12-5.fc44.x86_64
dwz-0.16-3.fc44.x86_64
ed-1.22.5-2.fc45.x86_64
efi-srpm-macros-6-6.fc44.noarch
elfutils-0.194-5.fc45.x86_64
elfutils-debuginfod-client-0.194-5.fc45.x86_64
elfutils-default-yama-scope-0.194-5.fc45.noarch
elfutils-libelf-0.194-5.fc45.x86_64
elfutils-libs-0.194-5.fc45.x86_64
erlang-srpm-macros-0.3.11-1.fc45.noarch
fedora-gpg-keys-45-0.1.noarch
fedora-release-45-0.5.noarch
fedora-release-common-45-0.5.noarch
fedora-release-identity-basic-45-0.5.noarch
fedora-repos-45-0.1.noarch
fedora-repos-rawhide-45-0.1.noarch
file-5.47-1.fc45.x86_64
file-libs-5.47-1.fc45.x86_64
filesystem-3.18-56.fc45.x86_64
filesystem-srpm-macros-3.18-56.fc45.noarch
findutils-4.10.0-7.fc44.x86_64
fonts-srpm-macros-5.0.0-3.fc45.noarch
forge-srpm-macros-0.4.0-4.fc44.noarch
fpc-srpm-macros-1.3-16.fc44.noarch
gap-srpm-macros-2-2.fc44.noarch
gawk-5.4.0-2.fc45.x86_64
gdb-minimal-17.1-5.fc45.x86_64
gdbm-libs-1.23-11.fc44.x86_64
ghc-srpm-macros-1.10-1.fc44.noarch
glibc-2.43.9000-8.fc45.x86_64
glibc-common-2.43.9000-8.fc45.x86_64
glibc-gconv-extra-2.43.9000-8.fc45.x86_64
glibc-minimal-langpack-2.43.9000-8.fc45.x86_64
gmp-6.3.0-5.fc44.x86_64
gnat-srpm-macros-7-2.fc44.noarch
gnulib-l10n-20241231-2.fc44.noarch
gnupg2-2.4.9-5.fc44.x86_64
gnupg2-dirmngr-2.4.9-5.fc44.x86_64
gnupg2-gpg-agent-2.4.9-5.fc44.x86_64
gnupg2-gpgconf-2.4.9-5.fc44.x86_64
gnupg2-keyboxd-2.4.9-5.fc44.x86_64
gnupg2-verify-2.4.9-5.fc44.x86_64
gnutls-3.8.12-1.fc45.x86_64
go-srpm-macros-3.8.0-2.fc44.noarch
gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899
gpgverify-2.2-4.fc44.noarch
grep-3.12-3.fc44.x86_64
gzip-1.14-2.fc44.x86_64
ima-evm-utils-libs-1.6.2-10.fc45.x86_64
info-7.3-1.fc45.x86_64
jansson-2.14-4.fc44.x86_64
java-srpm-macros-1-8.fc44.noarch
json-c-0.18-8.fc44.x86_64
kernel-srpm-macros-1.0-29.fc45.noarch
keyutils-libs-1.6.3-7.fc44.x86_64
krb5-libs-1.22.2-4.fc45.x86_64
libacl-2.3.2-6.fc44.x86_64
libarchive-3.8.6-1.fc45.x86_64
libassuan-2.5.7-5.fc44.x86_64
libattr-2.5.2-8.fc44.x86_64
libblkid-2.42-7.fc45.x86_64
libbrotli-1.2.0-3.fc44.x86_64
libcap-2.78-1.fc45.x86_64
libcap-ng-0.9.3-1.fc45.x86_64
libcbor-0.13.0-2.fc44.x86_64
libcom_err-1.47.4-1.fc45.x86_64
libcurl-8.20.0~rc1-1.fc45.x86_64
libeconf-0.7.9-3.fc44.x86_64
libevent-2.1.12-17.fc44.x86_64
libfdisk-2.42-7.fc45.x86_64
libffi-3.5.2-2.fc44.x86_64
libfido2-1.16.0-5.fc44.x86_64
libfsverity-1.7-1.fc45.x86_64
libgcc-16.0.1-0.10.fc45.x86_64
libgcrypt-1.12.1-1.fc45.x86_64
libgomp-16.0.1-0.10.fc45.x86_64
libgpg-error-1.59-1.fc45.x86_64
libidn2-2.3.8-3.fc44.x86_64
libksba-1.6.8-1.fc45.x86_64
liblastlog2-2.42-7.fc45.x86_64
libmount-2.42-7.fc45.x86_64
libnghttp2-1.68.1-1.fc45.x86_64
libnghttp3-1.15.0-1.fc44.x86_64
libpkgconf-2.5.1-1.fc45.x86_64
libpsl-0.21.5-7.fc44.x86_64
libselinux-3.10-1.fc44.x86_64
libselinux-utils-3.10-1.fc44.x86_64
libsemanage-3.10-1.fc44.x86_64
libsepol-3.10-1.fc44.x86_64
libsmartcols-2.42-7.fc45.x86_64
libssh-0.12.0-1.fc45.x86_64
libssh-config-0.12.0-1.fc45.noarch
libstdc++-16.0.1-0.10.fc45.x86_64
libtasn1-4.21.0-1.fc45.x86_64
libtool-ltdl-2.5.4-10.fc44.x86_64
libunistring-1.1-11.fc44.x86_64
libusb1-1.0.29-5.fc44.x86_64
libuuid-2.42-7.fc45.x86_64
libverto-0.3.2-12.fc44.x86_64
libxcrypt-4.5.2-3.fc44.x86_64
libxml2-2.12.10-6.fc44.x86_64
libzstd-1.5.7-5.fc44.x86_64
linkdupes-0.7.3-2.fc45.x86_64
lua-libs-5.5.0-1.fc45.x86_64
lua-srpm-macros-1-17.fc44.noarch
lz4-libs-1.10.0-4.fc44.x86_64
mpfr-4.2.2-3.fc44.x86_64
ncurses-base-6.6-1.fc44.noarch
ncurses-libs-6.6-1.fc44.x86_64
nettle-3.10.1-3.fc44.x86_64
ngtcp2-1.21.0-1.fc45.x86_64
ngtcp2-crypto-ossl-1.21.0-1.fc45.x86_64
npth-1.8-4.fc44.x86_64
ocaml-srpm-macros-11-3.fc44.noarch
openblas-srpm-macros-2-21.fc44.noarch
openldap-2.6.13-1.fc45.x86_64
openssl-libs-3.5.5-1.fc44.x86_64
p11-kit-0.26.2-1.fc45.x86_64
p11-kit-trust-0.26.2-1.fc45.x86_64
package-notes-srpm-macros-0.17-3.fc45.noarch
pam-libs-1.7.2-1.fc44.x86_64
patch-2.8-4.fc44.x86_64
pcre2-10.47-1.fc44.1.x86_64
pcre2-syntax-10.47-1.fc44.1.noarch
perl-srpm-macros-1-61.fc44.noarch
pkgconf-2.5.1-1.fc45.x86_64
pkgconf-m4-2.5.1-1.fc45.noarch
pkgconf-pkg-config-2.5.1-1.fc45.x86_64
policycoreutils-3.10-3.fc45.x86_64
popt-1.19-10.fc44.x86_64
publicsuffix-list-dafsa-20260116-1.fc44.noarch
pyproject-srpm-macros-1.19.0-1.fc45.noarch
python-srpm-macros-3.14-12.fc45.noarch
qt5-srpm-macros-5.15.18-2.fc44.noarch
qt6-srpm-macros-6.10.3-1.fc45.noarch
readline-8.3-4.fc44.x86_64
redhat-rpm-config-344-1.fc45.noarch
redhat-systemd-presets-102-1.fc45.noarch
redhat-systemd-presets-common-102-1.fc45.noarch
rpm-6.0.1-5.fc45.x86_64
rpm-build-6.0.1-5.fc45.x86_64
rpm-build-libs-6.0.1-5.fc45.x86_64
rpm-libs-6.0.1-5.fc45.x86_64
rpm-plugin-selinux-6.0.1-5.fc45.x86_64
rpm-sequoia-1.10.1-1.fc45.x86_64
rpm-sign-libs-6.0.1-5.fc45.x86_64
rust-srpm-macros-28.4-3.fc44.noarch
sed-4.9-8.fc45.x86_64
selinux-policy-43.6-1.fc45.noarch
selinux-policy-targeted-43.6-1.fc45.noarch
setup-2.15.0-29.fc45.noarch
shadow-utils-4.19.3-1.fc45.x86_64
sqlite-libs-3.52.0-1.fc45.x86_64
systemd-libs-260.1-2.fc45.x86_64
systemd-standalone-sysusers-260.1-2.fc45.x86_64
tar-1.35-8.fc44.x86_64
tpm2-tss-4.1.3-9.fc44.x86_64
tree-sitter-srpm-macros-0.4.2-2.fc44.noarch
unzip-6.0-69.fc44.x86_64
util-linux-2.42-7.fc45.x86_64
util-linux-core-2.42-7.fc45.x86_64
which-2.23-4.fc44.x86_64
xxhash-libs-0.8.3-4.fc44.x86_64
xz-5.8.3-1.fc45.x86_64
xz-libs-5.8.3-1.fc45.x86_64
zig-srpm-macros-1-8.fc44.noarch
zip-3.0-45.fc44.x86_64
zlib-ng-compat-2.3.3-5.fc45.x86_64
zstd-1.5.7-5.fc44.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1776038400
Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1776077438.297492/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-msfv1mq8/bout++/bout++.spec) Config(child) 0 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.2.0-11.fc45.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776077438.297492/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776077438.297492/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1776077438.297492/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-5.fc45.x86_64
  rpm-sequoia-1.10.1-1.fc45.x86_64
  dnf5-5.4.0.0-6.fc45.x86_64
  dnf5-plugins-5.4.0.0-6.fc45.x86_64
Finish: chroot init
Start: build phase for bout++-5.2.0-11.fc45.src.rpm
Start: build setup for bout++-5.2.0-11.fc45.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1776038400
Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm
Updating and loading repositories:
 fedora                                 100% |  70.9 KiB/s |  38.1 KiB |  00m01s
 Copr repository                        100% |   3.7 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                               Arch   Version                          Repository      Size
Installing:
 chrpath                              x86_64 0:0.16-28.fc44                   fedora      58.3 KiB
 cmake                                x86_64 0:4.3.0-1.fc45                   fedora      40.5 MiB
 doxygen                              x86_64 2:1.16.1-3.fc45                  copr_base   20.6 MiB
 environment-modules                  x86_64 0:5.6.1-3.fc44                   fedora       1.9 MiB
 fftw-devel                           x86_64 0:3.3.10-17.fc44                 fedora     283.1 KiB
 flexiblas-devel                      x86_64 0:3.5.0-2.fc44                   fedora       5.9 MiB
 fmt-devel                            x86_64 0:12.1.0-1.fc45                  copr_base  575.5 KiB
 gcc-c++                              x86_64 0:16.0.1-0.10.fc45               fedora      46.3 MiB
 gettext-devel                        x86_64 0:1.0-1.fc45                     fedora       1.4 MiB
 hdf5-devel                           x86_64 0:1.14.6-7.fc44                  fedora       3.3 MiB
 hdf5-mpich-devel                     x86_64 0:1.14.6-7.fc44                  fedora       3.2 MiB
 hdf5-openmpi-devel                   x86_64 0:1.14.6-7.fc44                  fedora       3.2 MiB
 m4                                   x86_64 0:1.4.21-1.fc45                  fedora     881.1 KiB
 mpark-variant-devel                  x86_64 0:1.4.0-16.fc44                  fedora     117.2 KiB
 mpich-devel                          x86_64 0:4.2.2-7.fc44                   fedora       2.0 MiB
 netcdf-cxx4-devel                    x86_64 0:4.3.1-22.fc44                  fedora     214.3 KiB
 netcdf-devel                         x86_64 0:4.9.3-2.fc44                   fedora     397.7 KiB
 openmpi-devel                        x86_64 0:5.0.10-1.fc45                  fedora       3.2 MiB
 petsc-mpich-devel                    x86_64 0:3.24.6-1.fc45                  fedora      16.0 MiB
 petsc-openmpi-devel                  x86_64 0:3.24.6-1.fc45                  fedora      16.5 MiB
 python3                              x86_64 0:3.14.4-1.fc45                  fedora      28.7 KiB
 python3-boutdata                     noarch 0:0.3.0-7.fc44                   fedora       1.2 MiB
 python3-cython                       x86_64 0:3.2.4-3.fc44                   fedora      19.2 MiB
 python3-devel                        x86_64 0:3.14.4-1.fc45                  fedora       2.0 MiB
 python3-jinja2                       noarch 0:3.1.6-7.fc44                   fedora       3.1 MiB
 python3-netcdf4                      x86_64 0:1.7.3-2.fc44                   fedora       2.3 MiB
 python3-numpy                        x86_64 1:2.4.4-1.fc45                   fedora      41.3 MiB
 python3-scipy                        x86_64 0:1.16.2-3.fc44                  fedora      64.5 MiB
 python3-sphinx                       noarch 1:9.1.0-1.fc45                   fedora      13.8 MiB
 python3-tables                       x86_64 0:3.10.2-8.fc44                  fedora      10.0 MiB
 python3-zoidberg                     noarch 0:0.2.2-2.fc44                   fedora     827.0 KiB
 sundials-devel                       x86_64 0:7.6.0-1.fc45                   fedora      29.0 MiB
 sundials-mpich-devel                 x86_64 0:7.6.0-1.fc45                   fedora      30.2 MiB
 sundials-openmpi-devel               x86_64 0:7.6.0-1.fc45                   fedora      30.2 MiB
 zlib-ng-compat-devel                 x86_64 0:2.3.3-5.fc45                   fedora     107.0 KiB
Installing dependencies:
 MUMPS-common                         noarch 0:5.7.3-7.fc44                   fedora     988.4 KiB
 MUMPS-mpich                          x86_64 0:5.7.3-7.fc44                   fedora       9.7 MiB
 MUMPS-openmpi                        x86_64 0:5.7.3-7.fc44                   fedora       9.7 MiB
 abattis-cantarell-vf-fonts           noarch 0:0.301-17.fc44                  fedora     192.7 KiB
 adobe-mappings-cmap                  noarch 0:20231115-5.fc44                fedora      15.2 MiB
 adobe-mappings-cmap-deprecated       noarch 0:20231115-5.fc44                fedora     582.1 KiB
 adobe-mappings-pdf                   noarch 0:20190401-12.fc44               fedora       4.4 MiB
 annobin-docs                         noarch 0:13.07-1.fc45                   fedora      99.2 KiB
 annobin-plugin-gcc                   x86_64 0:13.07-1.fc45                   fedora     697.1 KiB
 avahi-libs                           x86_64 0:0.9~rc2-8.fc44                 fedora     179.2 KiB
 blosc                                x86_64 0:1.21.6-10.fc44                 fedora     126.1 KiB
 blosc2                               x86_64 0:2.22.0-2.fc44                  fedora     562.9 KiB
 brotli                               x86_64 0:1.2.0-3.fc44                   fedora      33.4 KiB
 brotli-devel                         x86_64 0:1.2.0-3.fc44                   fedora      65.9 KiB
 bubblewrap                           x86_64 0:0.11.0-4.fc44                  fedora     134.8 KiB
 cairo                                x86_64 0:1.18.4-6.fc44                  fedora       1.8 MiB
 cairo-gobject                        x86_64 0:1.18.4-6.fc44                  fedora      31.0 KiB
 clang-libs                           x86_64 0:22.1.3-1.fc45                  fedora     109.8 MiB
 clang-resource-filesystem            x86_64 0:22.1.3-1.fc45                  fedora      15.3 KiB
 cmake-data                           noarch 0:4.3.0-1.fc45                   fedora       9.4 MiB
 cmake-filesystem                     x86_64 0:4.3.0-1.fc45                   fedora       0.0   B
 cmake-rpm-macros                     noarch 0:4.3.0-1.fc45                   fedora       8.4 KiB
 cpp                                  x86_64 0:16.0.1-0.10.fc45               fedora      42.1 MiB
 cups-filesystem                      noarch 1:2.4.16-7.fc45                  fedora       0.0   B
 cups-libs                            x86_64 1:2.4.16-7.fc45                  fedora     634.6 KiB
 dbus-libs                            x86_64 1:1.16.2-1.fc45                  fedora     357.5 KiB
 default-fonts-core-sans              noarch 0:4.3-1.fc45                     fedora      11.9 KiB
 dejavu-sans-fonts                    noarch 0:2.37-29.fc44                   fedora       5.5 MiB
 emacs-filesystem                     x86_64 1:30.2-2.fc44                    fedora       0.0   B
 expat                                x86_64 0:2.7.5-1.fc45                   fedora     322.9 KiB
 fftw                                 x86_64 0:3.3.10-17.fc44                 fedora     181.4 KiB
 fftw-libs                            x86_64 0:3.3.10-17.fc44                 fedora       0.0   B
 fftw-libs-double                     x86_64 0:3.3.10-17.fc44                 fedora       3.4 MiB
 fftw-libs-long                       x86_64 0:3.3.10-17.fc44                 fedora       1.5 MiB
 fftw-libs-quad                       x86_64 0:3.3.10-17.fc44                 fedora       2.5 MiB
 fftw-libs-single                     x86_64 0:3.3.10-17.fc44                 fedora       3.6 MiB
 flexiblas                            x86_64 0:3.5.0-2.fc44                   fedora      38.0 KiB
 flexiblas-netlib                     x86_64 0:3.5.0-2.fc44                   fedora      16.3 MiB
 flexiblas-netlib64                   x86_64 0:3.5.0-2.fc44                   fedora      16.5 MiB
 flexiblas-openblas-openmp            x86_64 0:3.5.0-2.fc44                   fedora      39.1 KiB
 flexiblas-openblas-openmp64          x86_64 0:3.5.0-2.fc44                   fedora      39.1 KiB
 fmt                                  x86_64 0:12.1.0-1.fc45                  copr_base  292.1 KiB
 fontconfig                           x86_64 0:2.17.0-4.fc44                  fedora     776.4 KiB
 fonts-filesystem                     noarch 1:5.0.0-3.fc45                   fedora       0.0   B
 freetype                             x86_64 0:2.14.1-3.fc45                  fedora     922.2 KiB
 fribidi                              x86_64 0:1.0.16-4.fc44                  fedora     190.0 KiB
 gcc                                  x86_64 0:16.0.1-0.10.fc45               fedora     120.6 MiB
 gcc-gfortran                         x86_64 0:16.0.1-0.10.fc45               fedora      44.8 MiB
 gcc-plugin-annobin                   x86_64 0:16.0.1-0.10.fc45               fedora      57.2 KiB
 gd                                   x86_64 0:2.3.3-21.fc44                  fedora     411.5 KiB
 gdk-pixbuf2                          x86_64 0:2.44.6-1.fc45                  fedora       2.6 MiB
 gettext                              x86_64 0:1.0-1.fc45                     fedora      17.8 MiB
 gettext-common-devel                 noarch 0:1.0-1.fc45                     fedora     596.2 KiB
 gettext-envsubst                     x86_64 0:1.0-1.fc45                     fedora      74.6 KiB
 gettext-libs                         x86_64 0:1.0-1.fc45                     fedora       2.3 MiB
 gettext-runtime                      x86_64 0:1.0-1.fc45                     fedora     716.0 KiB
 glib2                                x86_64 0:2.88.0-1.fc45                  fedora      15.3 MiB
 glibc-devel                          x86_64 0:2.43.9000-8.fc45               fedora       2.3 MiB
 glycin-libs                          x86_64 0:2.1.1-1.fc45                   fedora       4.3 MiB
 glycin-loaders                       x86_64 0:2.1.1-1.fc45                   fedora      14.0 MiB
 gobject-introspection                x86_64 0:1.86.0-3.fc45                  fedora     397.3 KiB
 google-droid-sans-fonts              noarch 0:20200215-24.fc44               fedora       6.3 MiB
 google-noto-fonts-common             noarch 0:20260401-1.fc45                fedora      17.7 KiB
 google-noto-sans-vf-fonts            noarch 0:20260401-1.fc45                fedora       1.4 MiB
 gpgme                                x86_64 0:2.0.1-3.fc44                   fedora     617.8 KiB
 gpgmepp                              x86_64 0:2.0.1-3.fc44                   fedora     441.6 KiB
 graphite2                            x86_64 0:1.3.14-20.fc44                 fedora     191.5 KiB
 graphviz                             x86_64 0:14.1.4-1.fc45                  fedora       4.0 MiB
 graphviz-libs                        x86_64 0:14.1.4-1.fc45                  fedora       1.3 MiB
 groff-base                           x86_64 0:1.24.0-1.fc45                  fedora       4.2 MiB
 gts                                  x86_64 0:0.7.6-52.20121130.fc44         fedora     650.9 KiB
 harfbuzz                             x86_64 0:14.1.0-2.fc45                  fedora       2.8 MiB
 hdf-libs                             x86_64 0:4.3.0-6.fc45                   fedora     706.8 KiB
 hdf5                                 x86_64 0:1.14.6-7.fc44                  fedora       6.5 MiB
 hdf5-mpich                           x86_64 0:1.14.6-7.fc44                  fedora       6.5 MiB
 hdf5-openmpi                         x86_64 0:1.14.6-7.fc44                  fedora       6.5 MiB
 highway                              x86_64 0:1.3.0-2.fc44                   fedora       5.5 MiB
 hwloc-libs                           x86_64 0:2.12.0-3.fc44                  fedora       2.9 MiB
 hypre-mpich                          x86_64 0:2.32.0-9.fc45                  fedora       5.4 MiB
 hypre-openmpi                        x86_64 0:2.32.0-9.fc45                  fedora       5.4 MiB
 jbig2dec-libs                        x86_64 0:0.20-8.fc44                    fedora     168.8 KiB
 jbigkit-libs                         x86_64 0:2.1-33.fc44                    fedora     117.2 KiB
 js-doxygen                           noarch 2:1.16.1-3.fc45                  copr_base  375.0 KiB
 jsoncpp                              x86_64 0:1.9.6-3.fc44                   fedora     285.6 KiB
 kernel-headers                       x86_64 0:7.0.0-0.rc7.55.fc45            fedora       6.9 MiB
 keyutils-libs-devel                  x86_64 0:1.6.3-7.fc44                   fedora      48.2 KiB
 krb5-devel                           x86_64 0:1.22.2-4.fc45                  fedora     709.9 KiB
 lasi                                 x86_64 0:1.1.3-18.fc44                  fedora     126.6 KiB
 lcms2                                x86_64 0:2.16-7.fc44                    fedora     445.7 KiB
 less                                 x86_64 0:692-5.fc45                     fedora     466.8 KiB
 libICE                               x86_64 0:1.1.2-4.fc44                   fedora     198.3 KiB
 libSM                                x86_64 0:1.2.5-4.fc44                   fedora     100.9 KiB
 libX11                               x86_64 0:1.8.13-1.fc45                  fedora       1.3 MiB
 libX11-common                        noarch 0:1.8.13-1.fc45                  fedora       1.1 MiB
 libXau                               x86_64 0:1.0.12-4.fc44                  fedora      72.8 KiB
 libXext                              x86_64 0:1.3.6-5.fc44                   fedora      89.8 KiB
 libXft                               x86_64 0:2.3.8-10.fc44                  fedora     168.3 KiB
 libXpm                               x86_64 0:3.5.17-7.fc44                  fedora     148.2 KiB
 libXrender                           x86_64 0:0.9.12-4.fc44                  fedora      49.9 KiB
 libXt                                x86_64 0:1.3.1-4.fc44                   fedora     437.6 KiB
 libaec                               x86_64 0:1.1.6-1.fc45                   fedora      91.8 KiB
 libaec-devel                         x86_64 0:1.1.6-1.fc45                   fedora      22.6 KiB
 libaom                               x86_64 0:3.13.3-1.fc45                  fedora       5.1 MiB
 libatomic                            x86_64 0:16.0.1-0.10.fc45               fedora      45.5 KiB
 libavif                              x86_64 0:1.3.0-4.fc44                   fedora     265.8 KiB
 libcom_err-devel                     x86_64 0:1.47.4-1.fc45                  fedora      16.7 KiB
 libcurl-devel                        x86_64 0:8.20.0~rc1-1.fc45              fedora       1.4 MiB
 libdatrie                            x86_64 0:0.2.14-2.fc44                  fedora      61.7 KiB
 libdav1d                             x86_64 0:1.5.3-1.fc45                   fedora       1.7 MiB
 libedit                              x86_64 0:3.1-58.20251016cvs.fc44        fedora     248.1 KiB
 libfabric                            x86_64 0:2.5.0-2.fc45                   fedora       9.3 MiB
 libgfortran                          x86_64 0:16.0.1-0.10.fc45               fedora       3.4 MiB
 libgs                                x86_64 0:10.07.0-1.fc45                 fedora      24.6 MiB
 libheif                              x86_64 0:1.21.2-3.fc45                  fedora       1.8 MiB
 libibverbs                           x86_64 0:62.0-1.fc45                    fedora       1.3 MiB
 libidn2-devel                        x86_64 0:2.3.8-3.fc44                   fedora     149.1 KiB
 libijs                               x86_64 0:0.35-26.fc44                   fedora      61.4 KiB
 libimagequant                        x86_64 0:4.1.0-2.fc44                   fedora     707.6 KiB
 libjpeg-turbo                        x86_64 0:3.1.4.1-1.fc45                 fedora     825.7 KiB
 libjxl                               x86_64 1:0.11.1-8.fc44                  fedora       4.1 MiB
 libkadm5                             x86_64 0:1.22.2-4.fc45                  fedora     217.8 KiB
 liblerc                              x86_64 0:4.1.0-1.fc45                   fedora     640.4 KiB
 libmpc                               x86_64 0:1.4.0-1.fc45                   fedora     169.2 KiB
 libnghttp2-devel                     x86_64 0:1.68.1-1.fc45                  fedora     288.0 KiB
 libnghttp3-devel                     x86_64 0:1.15.0-1.fc44                  fedora     107.4 KiB
 libnl3                               x86_64 0:3.12.0-3.fc44                  fedora       1.1 MiB
 libopenjph                           x86_64 0:0.26.3-1.fc45                  fedora     482.1 KiB
 libpaper                             x86_64 1:2.1.1-10.fc44                  fedora      48.6 KiB
 libpipeline                          x86_64 0:1.5.8-4.fc44                   fedora     145.0 KiB
 libpng                               x86_64 2:1.6.56-1.fc45                  fedora     249.6 KiB
 libpsl-devel                         x86_64 0:0.21.5-7.fc44                  fedora     110.2 KiB
 libpsm2                              x86_64 0:12.0.1-7.fc45                  fedora     454.2 KiB
 libqhull_r                           x86_64 1:8.0.2-8.fc44                   fedora     491.2 KiB
 libquadmath                          x86_64 0:16.0.1-0.10.fc45               fedora     325.9 KiB
 libquadmath-devel                    x86_64 0:16.0.1-0.10.fc45               fedora      22.2 KiB
 libraqm                              x86_64 0:0.10.1-4.fc44                  fedora      32.5 KiB
 librdmacm                            x86_64 0:62.0-1.fc45                    fedora     153.8 KiB
 librsvg2                             x86_64 0:2.62.0-1.fc45                  fedora       5.0 MiB
 libseccomp                           x86_64 0:2.6.0-3.fc44                   fedora     224.8 KiB
 libselinux-devel                     x86_64 0:3.10-1.fc44                    fedora     122.2 KiB
 libsepol-devel                       x86_64 0:3.10-1.fc44                    fedora     121.5 KiB
 libssh-devel                         x86_64 0:0.12.0-1.fc45                  fedora     203.5 KiB
 libstdc++-devel                      x86_64 0:16.0.1-0.10.fc45               fedora      38.8 MiB
 libtextstyle                         x86_64 0:1.0-1.fc45                     fedora     211.4 KiB
 libthai                              x86_64 0:0.1.30-2.fc44                  fedora     800.9 KiB
 libtiff                              x86_64 0:4.7.1-2.fc44                   fedora     640.2 KiB
 libtirpc                             x86_64 0:1.3.7-2.fc44                   fedora     204.3 KiB
 libtommath                           x86_64 0:1.3.1~rc1-7.fc44               fedora     130.2 KiB
 libuv                                x86_64 1:1.52.1-1.fc45                  fedora     593.2 KiB
 libverto-devel                       x86_64 0:0.3.2-12.fc44                  fedora      25.7 KiB
 libvmaf                              x86_64 0:3.0.0-5.fc44                   fedora     846.8 KiB
 libwebp                              x86_64 0:1.6.0-3.fc44                   fedora     968.0 KiB
 libxcb                               x86_64 0:1.17.0-7.fc44                  fedora       1.1 MiB
 libxcrypt-devel                      x86_64 0:4.5.2-3.fc44                   fedora      31.0 KiB
 libyuv                               x86_64 0:0-0.62.20260213git6067afd.fc45 fedora     683.6 KiB
 libzip                               x86_64 0:1.11.4-3.fc44                  fedora     143.8 KiB
 llvm-filesystem                      x86_64 0:22.1.3-1.fc45                  fedora       0.0   B
 llvm-libs                            x86_64 0:22.1.3-1.fc45                  fedora     140.4 MiB
 lzo                                  x86_64 0:2.10-16.fc44                   fedora     174.8 KiB
 make                                 x86_64 1:4.4.1-12.fc44                  fedora       1.8 MiB
 man-db                               x86_64 0:2.13.1-3.fc44                  fedora       2.9 MiB
 metis                                x86_64 0:5.1.0.3-12.fc44                fedora     987.0 KiB
 mpdecimal                            x86_64 0:4.0.1-3.fc44                   fedora     217.1 KiB
 mpich                                x86_64 0:4.2.2-7.fc44                   fedora       7.1 MiB
 munge-libs                           x86_64 0:0.5.18-1.fc45                  fedora      31.9 KiB
 ncurses                              x86_64 0:6.6-1.fc44                     fedora     611.4 KiB
 netcdf                               x86_64 0:4.9.3-2.fc44                   fedora       2.5 MiB
 netcdf-cxx4                          x86_64 0:4.3.1-22.fc44                  fedora     325.3 KiB
 netpbm                               x86_64 0:11.13.00-2.fc44                fedora     583.9 KiB
 ngtcp2-crypto-ossl-devel             x86_64 0:1.21.0-1.fc45                  fedora       7.5 KiB
 ngtcp2-devel                         x86_64 0:1.21.0-1.fc45                  fedora     265.8 KiB
 ninja-build                          x86_64 0:1.13.2-2.fc44                  fedora     496.5 KiB
 noopenh264                           x86_64 0:2.6.0-4.fc44                   fedora      39.0 KiB
 nspr                                 x86_64 0:4.38.2-7.fc45                  fedora     327.1 KiB
 nss                                  x86_64 0:3.122.0-1.fc45                 fedora       2.0 MiB
 nss-softokn                          x86_64 0:3.122.0-1.fc45                 fedora       2.0 MiB
 nss-softokn-freebl                   x86_64 0:3.122.0-1.fc45                 fedora     998.7 KiB
 nss-sysinit                          x86_64 0:3.122.0-1.fc45                 fedora      17.9 KiB
 nss-util                             x86_64 0:3.122.0-1.fc45                 fedora     212.7 KiB
 numactl-libs                         x86_64 0:2.0.19-4.fc44                  fedora      56.8 KiB
 openblas                             x86_64 0:0.3.29-2.fc43                  fedora     111.7 KiB
 openblas-openmp                      x86_64 0:0.3.29-2.fc43                  fedora      43.7 MiB
 openblas-openmp64                    x86_64 0:0.3.29-2.fc43                  fedora      43.8 MiB
 openblas-serial                      x86_64 0:0.3.29-2.fc43                  fedora      41.5 MiB
 openjpeg                             x86_64 0:2.5.4-3.fc44                   fedora     464.2 KiB
 openmpi                              x86_64 0:5.0.10-1.fc45                  fedora       7.1 MiB
 openssh                              x86_64 0:10.2p1-10.fc45                 fedora       1.4 MiB
 openssh-clients                      x86_64 0:10.2p1-10.fc45                 fedora       2.7 MiB
 openssl-devel                        x86_64 1:3.5.5-1.fc44                   fedora       4.5 MiB
 orangefs                             x86_64 0:2.10.1-3.fc45                  fedora       1.7 MiB
 pango                                x86_64 0:1.57.1-1.fc45                  fedora       1.0 MiB
 pcre2-devel                          x86_64 0:10.47-1.fc44.1                 fedora       2.1 MiB
 pcre2-utf16                          x86_64 0:10.47-1.fc44.1                 fedora     655.2 KiB
 pcre2-utf32                          x86_64 0:10.47-1.fc44.1                 fedora     623.1 KiB
 perl-AutoLoader                      noarch 0:5.74-524.fc45                  fedora      20.6 KiB
 perl-B                               x86_64 0:1.89-524.fc45                  fedora     501.2 KiB
 perl-Carp                            noarch 0:1.54-521.fc44                  fedora      46.6 KiB
 perl-Class-Struct                    noarch 0:0.68-524.fc45                  fedora      25.4 KiB
 perl-Data-Dumper                     x86_64 0:2.191-522.fc44                 fedora     115.5 KiB
 perl-Digest                          noarch 0:1.20-521.fc44                  fedora      35.3 KiB
 perl-Digest-MD5                      x86_64 0:2.59-521.fc44                  fedora      59.6 KiB
 perl-DynaLoader                      x86_64 0:1.57-524.fc45                  fedora      32.1 KiB
 perl-Encode                          x86_64 4:3.21-521.fc44                  fedora       4.7 MiB
 perl-Errno                           x86_64 0:1.38-524.fc45                  fedora       8.4 KiB
 perl-Exporter                        noarch 0:5.79-521.fc44                  fedora      54.3 KiB
 perl-Fcntl                           x86_64 0:1.20-524.fc45                  fedora      48.7 KiB
 perl-File-Basename                   noarch 0:2.86-524.fc45                  fedora      14.0 KiB
 perl-File-Path                       noarch 0:2.18-522.fc44                  fedora      63.5 KiB
 perl-File-Temp                       noarch 1:0.231.200-2.fc44               fedora     163.7 KiB
 perl-File-stat                       noarch 0:1.14-524.fc45                  fedora      12.5 KiB
 perl-FileHandle                      noarch 0:2.05-524.fc45                  fedora       9.4 KiB
 perl-Getopt-Long                     noarch 1:2.58-521.fc44                  fedora     144.5 KiB
 perl-Getopt-Std                      noarch 0:1.14-524.fc45                  fedora      11.2 KiB
 perl-HTTP-Tiny                       noarch 0:0.092-2.fc44                   fedora     157.6 KiB
 perl-IO                              x86_64 0:1.55-524.fc45                  fedora     147.3 KiB
 perl-IO-Socket-IP                    noarch 0:0.43-522.fc44                  fedora     100.3 KiB
 perl-IO-Socket-SSL                   noarch 0:2.098-2.fc44                   fedora     723.5 KiB
 perl-IPC-Open3                       noarch 0:1.24-524.fc45                  fedora      27.7 KiB
 perl-MIME-Base32                     noarch 0:1.303-25.fc44                  fedora      30.7 KiB
 perl-MIME-Base64                     x86_64 0:3.16-521.fc44                  fedora      41.9 KiB
 perl-Net-SSLeay                      x86_64 0:1.96-1.fc45                    fedora       1.3 MiB
 perl-POSIX                           x86_64 0:2.23-524.fc45                  fedora     229.4 KiB
 perl-PathTools                       x86_64 0:3.94-521.fc44                  fedora     179.9 KiB
 perl-Pod-Escapes                     noarch 1:1.07-521.fc44                  fedora      24.9 KiB
 perl-Pod-Perldoc                     noarch 0:3.28.01-522.fc44               fedora     163.7 KiB
 perl-Pod-Simple                      noarch 1:3.47-4.fc44                    fedora     565.3 KiB
 perl-Pod-Usage                       noarch 4:2.05-521.fc44                  fedora      86.3 KiB
 perl-Scalar-List-Utils               x86_64 5:1.70-2.fc44                    fedora     144.8 KiB
 perl-SelectSaver                     noarch 0:1.02-524.fc45                  fedora       2.2 KiB
 perl-Socket                          x86_64 4:2.040-3.fc44                   fedora     120.1 KiB
 perl-Storable                        x86_64 1:3.37-522.fc44                  fedora     235.1 KiB
 perl-Symbol                          noarch 0:1.09-524.fc45                  fedora       6.8 KiB
 perl-Term-ANSIColor                  noarch 0:5.01-522.fc44                  fedora      97.5 KiB
 perl-Term-Cap                        noarch 0:1.18-521.fc44                  fedora      29.3 KiB
 perl-Text-ParseWords                 noarch 0:3.31-521.fc44                  fedora      13.6 KiB
 perl-Text-Tabs+Wrap                  noarch 0:2024.001-521.fc44              fedora      22.6 KiB
 perl-Time-HiRes                      x86_64 4:1.9778-521.fc44                fedora     115.6 KiB
 perl-Time-Local                      noarch 2:1.350-521.fc44                 fedora      69.0 KiB
 perl-URI                             noarch 0:5.34-3.fc44                    fedora     268.0 KiB
 perl-base                            noarch 0:2.27-524.fc45                  fedora      12.6 KiB
 perl-constant                        noarch 0:1.33-522.fc44                  fedora      26.2 KiB
 perl-if                              noarch 0:0.61.000-524.fc45              fedora       5.8 KiB
 perl-interpreter                     x86_64 4:5.42.2-524.fc45                fedora     118.7 KiB
 perl-libnet                          noarch 0:3.15-522.fc44                  fedora     289.4 KiB
 perl-libs                            x86_64 4:5.42.2-524.fc45                fedora      11.6 MiB
 perl-locale                          noarch 0:1.13-524.fc45                  fedora       6.1 KiB
 perl-mro                             x86_64 0:1.29-524.fc45                  fedora      41.4 KiB
 perl-overload                        noarch 0:1.40-524.fc45                  fedora      71.6 KiB
 perl-overloading                     noarch 0:0.02-524.fc45                  fedora       4.9 KiB
 perl-parent                          noarch 1:0.244-521.fc44                 fedora      10.3 KiB
 perl-podlators                       noarch 1:6.0.2-521.fc44                 fedora     317.5 KiB
 perl-vars                            noarch 0:1.05-524.fc45                  fedora       3.9 KiB
 petsc-mpich                          x86_64 0:3.24.6-1.fc45                  fedora      26.2 MiB
 petsc-openmpi                        x86_64 0:3.24.6-1.fc45                  fedora      26.6 MiB
 pixman                               x86_64 0:0.46.2-3.fc44                  fedora     718.2 KiB
 pmix                                 x86_64 0:5.0.7-3.fc44                   fedora       2.2 MiB
 poppler                              x86_64 0:26.01.0-7.fc45                 fedora       4.0 MiB
 poppler-data                         noarch 0:0.4.11-11.fc44                 fedora      12.3 MiB
 poppler-glib                         x86_64 0:26.01.0-7.fc45                 fedora     658.9 KiB
 procps-ng                            x86_64 0:4.0.6-1.fc44                   fedora       1.1 MiB
 prrte                                x86_64 0:3.0.6-9.fc44                   fedora     161.4 KiB
 prrte-libs                           x86_64 0:3.0.6-9.fc44                   fedora       1.7 MiB
 ptscotch-mpich                       x86_64 0:7.0.10-2.fc44                  fedora       1.2 MiB
 ptscotch-openmpi                     x86_64 0:7.0.10-2.fc44                  fedora       1.2 MiB
 publicsuffix-list                    noarch 0:20260116-1.fc44                fedora     342.2 KiB
 pyproject-rpm-macros                 noarch 0:1.19.0-1.fc45                  fedora     116.7 KiB
 python-pip-wheel                     noarch 0:26.0.1-2.fc45                  fedora       1.2 MiB
 python-rpm-macros                    noarch 0:3.14-12.fc45                   fedora      28.0 KiB
 python3-babel                        noarch 0:2.18.0-1.fc45                  fedora      30.3 MiB
 python3-blosc2                       x86_64 0:3.12.0-1.fc44                  fedora       2.3 MiB
 python3-cairo                        x86_64 0:1.28.0-5.fc44                  fedora     508.8 KiB
 python3-certifi                      noarch 0:2026.01.04-1.fc45              fedora       7.4 KiB
 python3-cftime                       x86_64 0:1.6.5-2.fc44                   fedora       2.9 MiB
 python3-charset-normalizer           noarch 0:3.4.7-1.fc45                   fedora     405.6 KiB
 python3-contourpy                    x86_64 0:1.3.3-3.fc44                   fedora     856.7 KiB
 python3-cpuinfo                      noarch 0:9.0.0-17.fc44                  fedora     310.7 KiB
 python3-cycler                       noarch 0:0.11.0-20.fc44                 fedora      37.8 KiB
 python3-dateutil                     noarch 1:2.9.0.post0-10.fc45            fedora     878.0 KiB
 python3-docutils                     noarch 0:0.22.4-2.fc44                  fedora       5.5 MiB
 python3-fonttools                    x86_64 0:4.62.1-1.fc45                  fedora      19.4 MiB
 python3-fortranformat                noarch 0:2.0.3-2.fc44                   fedora     184.0 KiB
 python3-freeqdsk                     noarch 0:0.5.2-2.fc44                   fedora     160.9 KiB
 python3-idna                         noarch 0:3.11-2.fc44                    fedora     738.4 KiB
 python3-imagesize                    noarch 0:2.0.0-1.fc45                   fedora      82.4 KiB
 python3-kiwisolver                   x86_64 0:1.5.0-1.fc45                   fedora     157.8 KiB
 python3-libs                         x86_64 0:3.14.4-1.fc45                  fedora      43.8 MiB
 python3-markupsafe                   x86_64 0:3.0.2-7.fc44                   fedora      61.4 KiB
 python3-matplotlib                   x86_64 0:3.10.8-2.fc44                  fedora      31.8 MiB
 python3-matplotlib-data-fonts        x86_64 0:3.10.8-2.fc44                  fedora       7.9 MiB
 python3-mpmath                       noarch 0:1.4.0b3-3.fc45                 fedora       4.1 MiB
 python3-msgpack                      x86_64 0:1.1.2-2.fc44                   fedora     319.8 KiB
 python3-natsort                      noarch 0:8.4.0-9.fc44                   fedora     264.4 KiB
 python3-ndindex                      x86_64 0:1.10.0-6.fc44                  fedora       1.1 MiB
 python3-numexpr                      x86_64 0:2.14.1-1.fc44                  fedora     859.7 KiB
 python3-numpy-f2py                   x86_64 1:2.4.4-1.fc45                   fedora       2.1 MiB
 python3-olefile                      noarch 0:0.47-13.fc44                   fedora     346.5 KiB
 python3-packaging                    noarch 0:26.0-1.fc45                    fedora     732.3 KiB
 python3-pillow                       x86_64 0:12.2.0-1.fc45                  fedora       4.5 MiB
 python3-platformdirs                 noarch 0:4.9.1-1.fc45                   fedora     236.5 KiB
 python3-pooch                        noarch 0:1.9.0-1.fc44                   fedora     657.1 KiB
 python3-pygments                     noarch 0:2.19.2-1.fc45                  fedora      11.3 MiB
 python3-pyparsing                    noarch 0:3.1.2-15.fc44                  fedora       1.0 MiB
 python3-requests                     noarch 0:2.32.5-5.fc45                  fedora     476.9 KiB
 python3-roman-numerals               noarch 0:4.1.0-1.fc45                   fedora      40.8 KiB
 python3-rpm-generators               noarch 0:14-15.fc45                     fedora      81.7 KiB
 python3-rpm-macros                   noarch 0:3.14-12.fc45                   fedora       6.5 KiB
 python3-six                          noarch 0:1.17.0-8.fc44                  fedora     118.0 KiB
 python3-snowballstemmer              noarch 0:3.0.1-11.fc44                  fedora       1.8 MiB
 python3-sphinx-theme-alabaster       noarch 0:0.7.16-12.fc44                 fedora      42.0 KiB
 python3-sympy                        noarch 0:1.14.0-12.fc45                 fedora      84.3 MiB
 python3-typing-extensions            noarch 0:4.15.0-4.fc45                  fedora     538.8 KiB
 python3-urllib3                      noarch 0:2.6.3-3.fc45                   fedora       1.1 MiB
 rav1e-libs                           x86_64 0:0.8.1-3.fc44                   fedora       3.1 MiB
 rdma-core-common                     noarch 0:62.0-1.fc45                    fedora      21.9 KiB
 rhash                                x86_64 0:1.4.5-4.fc44                   fedora     354.8 KiB
 rpm-mpi-hooks                        noarch 0:8-13.fc44                      fedora       8.7 KiB
 scalapack-common                     x86_64 0:2.2.2-6.fc44                   fedora      27.5 KiB
 scalapack-mpich                      x86_64 0:2.2.2-6.fc44                   fedora       5.4 MiB
 scalapack-openmpi                    x86_64 0:2.2.2-6.fc44                   fedora       5.4 MiB
 shared-mime-info                     x86_64 0:2.4-3.fc44                     fedora       5.2 MiB
 snappy                               x86_64 0:1.2.2-4.fc44                   fedora      79.9 KiB
 spdlog                               x86_64 0:1.15.3-4.fc45                  copr_base  380.4 KiB
 suitesparse                          x86_64 0:7.11.0-2.fc44                  fedora      45.9 MiB
 suitesparse64                        x86_64 0:7.11.0-2.fc44                  fedora      45.9 MiB
 sundials                             x86_64 0:7.6.0-1.fc45                   fedora       4.1 MiB
 sundials-mpich                       x86_64 0:7.6.0-1.fc45                   fedora       4.4 MiB
 sundials-openmpi                     x86_64 0:7.6.0-1.fc45                   fedora       4.4 MiB
 superlu_dist-mpich                   x86_64 1:9.2.1-3.fc45                   fedora       1.8 MiB
 superlu_dist-openmpi                 x86_64 1:9.2.1-3.fc45                   fedora       1.8 MiB
 svt-av1-libs                         x86_64 0:3.1.2-2.fc44                   fedora       5.6 MiB
 tcl                                  x86_64 1:9.0.2-1.fc44                   fedora       4.3 MiB
 tzdata                               noarch 0:2026a-1.fc45                   fedora       1.2 MiB
 ucx                                  x86_64 0:1.19.0-2.fc44                  fedora       2.5 MiB
 urw-base35-bookman-fonts             noarch 0:20200910-28.fc45               fedora       1.4 MiB
 urw-base35-c059-fonts                noarch 0:20200910-28.fc45               fedora       1.4 MiB
 urw-base35-d050000l-fonts            noarch 0:20200910-28.fc45               fedora      84.3 KiB
 urw-base35-fonts                     noarch 0:20200910-28.fc45               fedora       5.3 KiB
 urw-base35-fonts-common              noarch 0:20200910-28.fc45               fedora      37.4 KiB
 urw-base35-gothic-fonts              noarch 0:20200910-28.fc45               fedora       1.2 MiB
 urw-base35-nimbus-mono-ps-fonts      noarch 0:20200910-28.fc45               fedora       1.0 MiB
 urw-base35-nimbus-roman-fonts        noarch 0:20200910-28.fc45               fedora       1.4 MiB
 urw-base35-nimbus-sans-fonts         noarch 0:20200910-28.fc45               fedora       2.4 MiB
 urw-base35-p052-fonts                noarch 0:20200910-28.fc45               fedora       1.5 MiB
 urw-base35-standard-symbols-ps-fonts noarch 0:20200910-28.fc45               fedora      64.9 KiB
 urw-base35-z003-fonts                noarch 0:20200910-28.fc45               fedora     390.8 KiB
 vim-filesystem                       noarch 2:9.2.280-1.fc45                 fedora      40.0   B
 web-assets-filesystem                noarch 0:5-25.fc44                      fedora      34.0   B
 xapian-core-libs                     x86_64 0:1.4.31-1.fc45                  fedora       2.1 MiB
 xml-common                           noarch 0:0.6.3-68.fc44                  fedora      78.4 KiB
 yaksa                                x86_64 0:0.3-9.fc44                     fedora      44.8 MiB
 zlib-ng                              x86_64 0:2.3.3-5.fc45                   fedora     186.0 KiB

Transaction Summary:
 Installing:       386 packages

Total size of inbound packages is 518 MiB. Need to download 303 MiB.
After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B).
[  1/386] m4-0:1.4.21-1.fc45.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/386] cmake-0:4.3.0-1.fc45.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/386] fmt-devel-0:12.1.0-1.fc45.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/386] gcc-c++-0:16.0.1-0.10.fc45.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/386] python3-0:3.14.4-1.fc45.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/386] zlib-ng-compat-devel-0:2.3.3- 100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/386] emacs-filesystem-1:30.2-2.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/386] less-0:692-5.fc45.x86_64      100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/386] vim-filesystem-2:9.2.280-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/386] lzo-0:2.10-16.fc44.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/386] cmake-data-0:4.3.0-1.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/386] cmake-filesystem-0:4.3.0-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/386] expat-0:2.7.5-1.fc45.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/386] jsoncpp-0:1.9.6-3.fc44.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/386] libuv-1:1.52.1-1.fc45.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/386] make-1:4.4.1-12.fc44.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/386] rhash-0:1.4.5-4.fc44.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/386] clang-libs-0:22.1.3-1.fc45.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/386] llvm-libs-0:22.1.3-1.fc45.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/386] perl-interpreter-4:5.42.2-524 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/386] xapian-core-libs-0:1.4.31-1.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/386] fmt-0:12.1.0-1.fc45.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/386] gcc-0:16.0.1-0.10.fc45.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/386] libmpc-0:1.4.0-1.fc45.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/386] python3-libs-0:3.14.4-1.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/386] groff-base-0:1.24.0-1.fc45.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/386] openssh-clients-0:10.2p1-10.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/386] libX11-0:1.8.13-1.fc45.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/386] freetype-0:2.14.1-3.fc45.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/386] clang-resource-filesystem-0:2 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/386] libedit-0:3.1-58.20251016cvs. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/386] llvm-filesystem-0:22.1.3-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/386] perl-libs-4:5.42.2-524.fc45.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/386] cpp-0:16.0.1-0.10.fc45.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/386] mpdecimal-0:4.0.1-3.fc44.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/386] python-pip-wheel-0:26.0.1-2.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/386] tzdata-0:2026a-1.fc45.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/386] openssh-0:10.2p1-10.fc45.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/386] libX11-common-0:1.8.13-1.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/386] libxcb-0:1.17.0-7.fc44.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 41/386] fonts-filesystem-1:5.0.0-3.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/386] harfbuzz-0:14.1.0-2.fc45.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[363/386] libnghttp3-devel-0:1.15.0-1.f 100% |   2.9 MiB/s |  26.4 KiB |  00m00s
[364/386] libpsl-devel-0:0.21.5-7.fc44. 100% |   3.6 MiB/s |  32.8 KiB |  00m00s
[365/386] publicsuffix-list-0:20260116- 100% |  44.8 MiB/s |  91.7 KiB |  00m00s
[366/386] libssh-devel-0:0.12.0-1.fc45. 100% |  11.6 MiB/s |  47.6 KiB |  00m00s
[367/386] ngtcp2-devel-0:1.21.0-1.fc45. 100% |   9.7 MiB/s |  49.9 KiB |  00m00s
[368/386] ngtcp2-crypto-ossl-devel-0:1. 100% |   2.2 MiB/s |  11.2 KiB |  00m00s
[369/386] keyutils-libs-devel-0:1.6.3-7 100% |  14.6 MiB/s |  59.7 KiB |  00m00s
[370/386] libcom_err-devel-0:1.47.4-1.f 100% |   3.3 MiB/s |  16.8 KiB |  00m00s
[371/386] libselinux-devel-0:3.10-1.fc4 100% |  49.4 MiB/s | 151.7 KiB |  00m00s
[372/386] libsepol-devel-0:3.10-1.fc44. 100% |  23.5 MiB/s |  48.2 KiB |  00m00s
[373/386] libverto-devel-0:0.3.2-12.fc4 100% |   2.8 MiB/s |  14.4 KiB |  00m00s
[374/386] libquadmath-devel-0:16.0.1-0. 100% |   7.2 MiB/s |  37.1 KiB |  00m00s
[375/386] procps-ng-0:4.0.6-1.fc44.x86_ 100% | 129.8 MiB/s | 398.9 KiB |  00m00s
[376/386] tcl-1:9.0.2-1.fc44.x86_64     100% | 137.0 MiB/s |   1.2 MiB |  00m00s
[377/386] pcre2-devel-0:10.47-1.fc44.1. 100% |  76.9 MiB/s | 550.9 KiB |  00m00s
[378/386] pcre2-utf32-0:10.47-1.fc44.1. 100% | 118.3 MiB/s | 242.2 KiB |  00m00s
[379/386] openssl-devel-1:3.5.5-1.fc44. 100% |  91.4 MiB/s |   3.0 MiB |  00m00s
[380/386] libtirpc-0:1.3.7-2.fc44.x86_6 100% |  32.3 MiB/s |  99.3 KiB |  00m00s
[381/386] hdf-libs-0:4.3.0-6.fc45.x86_6 100% |  42.7 MiB/s | 306.3 KiB |  00m00s
[382/386] pyproject-rpm-macros-0:1.19.0 100% |  21.9 MiB/s |  44.9 KiB |  00m00s
[383/386] python-rpm-macros-0:3.14-12.f 100% |   9.8 MiB/s |  20.0 KiB |  00m00s
[384/386] python3-rpm-generators-0:14-1 100% |  27.8 MiB/s |  28.5 KiB |  00m00s
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[386/386] js-doxygen-2:1.16.1-3.fc45.no 100% | 123.2 KiB/s | 109.7 KiB |  00m01s
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[386/386] Total                         100% | 114.4 MiB/s | 302.8 MiB |  00m03s
Running transaction
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[  2/388] Prepare transaction           100% |   1.0 KiB/s | 386.0   B |  00m00s
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[ 11/388] Installing metis-0:5.1.0.3-12 100% |  46.1 MiB/s | 991.6 KiB |  00m00s
[ 12/388] Installing libaec-0:1.1.6-1.f 100% |  91.7 MiB/s |  93.9 KiB |  00m00s
[ 13/388] Installing libwebp-0:1.6.0-3. 100% | 237.3 MiB/s | 972.1 KiB |  00m00s
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[ 19/388] Installing lcms2-0:2.16-7.fc4 100% | 218.4 MiB/s | 447.3 KiB |  00m00s
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[ 21/388] Installing expat-0:2.7.5-1.fc 100% |  16.7 MiB/s | 325.0 KiB |  00m00s
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[ 28/388] Installing fmt-0:12.1.0-1.fc4 100% | 286.7 MiB/s | 293.6 KiB |  00m00s
[ 29/388] Installing vim-filesystem-2:9 100% |   4.7 MiB/s |   4.8 KiB |  00m00s
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[ 31/388] Installing fftw-libs-quad-0:3 100% | 313.1 MiB/s |   2.5 MiB |  00m00s
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[ 36/388] Installing libICE-0:1.1.2-4.f 100% | 195.0 MiB/s | 199.7 KiB |  00m00s
[ 37/388] Installing svt-av1-libs-0:3.1 100% | 330.1 MiB/s |   5.6 MiB |  00m00s
[ 38/388] Installing rav1e-libs-0:0.8.1 100% | 308.3 MiB/s |   3.1 MiB |  00m00s
[ 39/388] Installing fribidi-0:1.0.16-4 100% |   9.4 MiB/s | 192.5 KiB |  00m00s
[ 40/388] Installing adobe-mappings-cma 100% | 323.2 MiB/s |  15.2 MiB |  00m00s
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[ 47/388] Installing tzdata-0:2026a-1.f 100% |  30.9 MiB/s |   1.5 MiB |  00m00s
[ 48/388] Installing libtextstyle-0:1.0 100% | 207.1 MiB/s | 212.1 KiB |  00m00s
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[ 52/388] Installing fftw-libs-double-0 100% | 311.2 MiB/s |   3.4 MiB |  00m00s
[ 53/388] Installing libedit-0:3.1-58.2 100% |  22.2 MiB/s | 249.8 KiB |  00m00s
[ 54/388] Installing groff-base-0:1.24. 100% |  84.5 MiB/s |   4.2 MiB |  00m00s
[ 55/388] Installing make-1:4.4.1-12.fc 100% |  69.2 MiB/s |   1.8 MiB |  00m00s
[ 56/388] Installing lzo-0:2.10-16.fc44 100% | 172.3 MiB/s | 176.4 KiB |  00m00s
[ 57/388] Installing less-0:692-5.fc45. 100% |  23.0 MiB/s | 470.4 KiB |  00m00s
[ 58/388] Installing emacs-filesystem-1 100% |   0.0   B/s | 812.0   B |  00m00s
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[ 61/388] Installing orangefs-0:2.10.1- 100% |  64.8 MiB/s |   1.7 MiB |  00m00s
[ 62/388] Installing librdmacm-0:62.0-1 100% | 152.0 MiB/s | 155.7 KiB |  00m00s
[ 63/388] Installing libfabric-0:2.5.0- 100% | 231.5 MiB/s |   9.3 MiB |  00m00s
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[ 67/388] Installing pyproject-rpm-macr 100% | 115.9 MiB/s | 118.7 KiB |  00m00s
[ 68/388] Installing spdlog-0:1.15.3-4. 100% | 186.4 MiB/s | 381.7 KiB |  00m00s
[ 69/388] Installing openblas-openmp-0: 100% | 546.1 MiB/s |  43.7 MiB |  00m00s
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[ 77/388] Installing openblas-openmp64- 100% | 554.8 MiB/s |  43.8 MiB |  00m00s
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[ 81/388] Installing cpp-0:16.0.1-0.10. 100% | 298.5 MiB/s |  42.1 MiB |  00m00s
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[ 84/388] Installing nss-0:3.122.0-1.fc 100% | 151.6 MiB/s |   2.0 MiB |  00m00s
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[353/388] Installing superlu_dist-openm 100% | 295.8 MiB/s |   1.8 MiB |  00m00s
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[355/388] Installing sundials-openmpi-0 100% | 244.2 MiB/s |   4.4 MiB |  00m00s
[356/388] Installing superlu_dist-mpich 100% | 295.2 MiB/s |   1.8 MiB |  00m00s
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[359/388] Installing netcdf-cxx4-0:4.3. 100% | 318.8 MiB/s | 326.4 KiB |  00m00s
[360/388] Installing gettext-common-dev 100% | 582.5 MiB/s | 596.5 KiB |  00m00s
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[362/388] Installing rhash-0:1.4.5-4.fc 100% |  14.7 MiB/s | 360.1 KiB |  00m00s
[363/388] Installing libuv-1:1.52.1-1.f 100% | 145.5 MiB/s | 596.0 KiB |  00m00s
[364/388] Installing jsoncpp-0:1.9.6-3. 100% | 140.2 MiB/s | 287.1 KiB |  00m00s
[365/388] Installing cmake-0:4.3.0-1.fc 100% | 234.1 MiB/s |  40.5 MiB |  00m00s
[366/388] Installing cmake-data-0:4.3.0 100% |  79.3 MiB/s |  10.1 MiB |  00m00s
[367/388] Installing doxygen-2:1.16.1-3 100% | 239.8 MiB/s |  20.6 MiB |  00m00s
[368/388] Installing gettext-devel-0:1. 100% |  59.6 MiB/s |   1.4 MiB |  00m00s
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[370/388] Installing sundials-mpich-dev 100% | 420.2 MiB/s |  30.3 MiB |  00m00s
[371/388] Installing petsc-mpich-devel- 100% | 401.9 MiB/s |  16.1 MiB |  00m00s
[372/388] Installing sundials-openmpi-d 100% | 420.7 MiB/s |  30.3 MiB |  00m00s
[373/388] Installing petsc-openmpi-deve 100% | 414.6 MiB/s |  16.6 MiB |  00m00s
[374/388] Installing python3-zoidberg-0 100% |  34.4 MiB/s | 844.6 KiB |  00m00s
[375/388] Installing python3-tables-0:3 100% | 190.8 MiB/s |  10.1 MiB |  00m00s
[376/388] Installing python3-sphinx-1:9 100% | 150.8 MiB/s |  14.0 MiB |  00m00s
[377/388] Installing python3-devel-0:3. 100% |  60.7 MiB/s |   2.0 MiB |  00m00s
[378/388] Installing python3-cython-0:3 100% | 220.0 MiB/s |  19.4 MiB |  00m00s
[379/388] Installing gcc-c++-0:16.0.1-0 100% | 289.7 MiB/s |  46.4 MiB |  00m00s
[380/388] Installing annobin-plugin-gcc 100% |  42.6 MiB/s | 698.8 KiB |  00m00s
[381/388] Installing gcc-plugin-annobin 100% |   3.4 MiB/s |  58.6 KiB |  00m00s
[382/388] Installing flexiblas-devel-0: 100% | 184.0 MiB/s |   5.9 MiB |  00m00s
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[384/388] Installing fftw-devel-0:3.3.1 100% | 141.2 MiB/s | 289.2 KiB |  00m00s
[385/388] Installing fmt-devel-0:12.1.0 100% | 282.5 MiB/s | 578.6 KiB |  00m00s
[386/388] Installing mpark-variant-deve 100% | 116.5 MiB/s | 119.3 KiB |  00m00s
[387/388] Installing m4-0:1.4.21-1.fc45 100% |  37.7 MiB/s | 887.6 KiB |  00m00s
[388/388] Installing chrpath-0:0.16-28. 100% |  86.9 KiB/s |  60.1 KiB |  00m01s
Warning: skipped OpenPGP checks for 5 packages from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1776038400
Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm
Updating and loading repositories:
 fedora                                 100% |  65.8 KiB/s |  38.1 KiB |  00m01s
 Copr repository                        100% |   3.2 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "chrpath-0.16-28.fc44.x86_64" is already installed.
Package "cmake-4.3.0-1.fc45.x86_64" is already installed.
Package "doxygen-2:1.16.1-3.fc45.x86_64" is already installed.
Nothing to do.
Package "environment-modules-5.6.1-3.fc44.x86_64" is already installed.
Package "fftw-devel-3.3.10-17.fc44.x86_64" is already installed.
Package "flexiblas-devel-3.5.0-2.fc44.x86_64" is already installed.
Package "fmt-devel-12.1.0-1.fc45.x86_64" is already installed.
Package "gcc-c++-16.0.1-0.10.fc45.x86_64" is already installed.
Package "gettext-devel-1.0-1.fc45.x86_64" is already installed.
Package "hdf5-devel-1.14.6-7.fc44.x86_64" is already installed.
Package "hdf5-mpich-devel-1.14.6-7.fc44.x86_64" is already installed.
Package "hdf5-openmpi-devel-1.14.6-7.fc44.x86_64" is already installed.
Package "m4-1.4.21-1.fc45.x86_64" is already installed.
Package "mpark-variant-devel-1.4.0-16.fc44.x86_64" is already installed.
Package "mpich-devel-4.2.2-7.fc44.x86_64" is already installed.
Package "netcdf-cxx4-devel-4.3.1-22.fc44.x86_64" is already installed.
Package "netcdf-devel-4.9.3-2.fc44.x86_64" is already installed.
Package "openmpi-devel-5.0.10-1.fc45.x86_64" is already installed.
Package "petsc-mpich-devel-3.24.6-1.fc45.x86_64" is already installed.
Package "petsc-openmpi-devel-3.24.6-1.fc45.x86_64" is already installed.
Package "python3-3.14.4-1.fc45.x86_64" is already installed.
Package "python3-boutdata-0.3.0-7.fc44.noarch" is already installed.
Package "python3-boutdata-0.3.0-7.fc44.noarch" is already installed.
Package "python3-cython-3.2.4-3.fc44.x86_64" is already installed.
Package "python3-devel-3.14.4-1.fc45.x86_64" is already installed.
Package "python3-jinja2-3.1.6-7.fc44.noarch" is already installed.
Package "python3-netcdf4-1.7.3-2.fc44.x86_64" is already installed.
Package "python3-numpy-1:2.4.4-1.fc45.x86_64" is already installed.
Package "python3-scipy-1.16.2-3.fc44.x86_64" is already installed.
Package "python3-sphinx-1:9.1.0-1.fc45.noarch" is already installed.
Package "python3-tables-3.10.2-8.fc44.x86_64" is already installed.
Package "python3-zoidberg-0.2.2-2.fc44.noarch" is already installed.
Package "sundials-devel-7.6.0-1.fc45.x86_64" is already installed.
Package "sundials-mpich-devel-7.6.0-1.fc45.x86_64" is already installed.
Package "sundials-openmpi-devel-7.6.0-1.fc45.x86_64" is already installed.
Package "zlib-ng-compat-devel-2.3.3-5.fc45.x86_64" is already installed.

Finish: build setup for bout++-5.2.0-11.fc45.src.rpm
Start: rpmbuild bout++-5.2.0-11.fc45.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1776038400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Cj0sad
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Cki00P
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0-build
+ cd /builddir/build/BUILD/bout++-5.2.0-build
+ rm -rf BOUT++-v5.2.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.2.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v5.2.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3188.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3111.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3266.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-expose-std-erase.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-fmt12-runtime.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-fake-mesh-accumulate.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.UGiiT5
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu_openmpi -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/openmpi -DCMAKE_INSTALL_LIBDIR:PATH=lib -DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include/openmpi-x86_64/bout++/ -DCMAKE_INSTALL_PYTHON_SITEARCH:PATH=/usr/lib64/python3.14/site-packages/openmpi -DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share -DBOUT_ENABLE_MPI:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.1
-- The CXX compiler identification is GNU 16.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.14 (found version "3.14.4") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:397 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "2.4.4")
-- Found Cython: TRUE (found version "3.2.4")
-- Found Bash: /usr/bin/bash (found version "5.3.9")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/openmpi-x86_64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- The C compiler identification is GNU 16.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.3")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "1.0")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.16.1") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi` to compile BOUT++ ***

-- Configuring done (3.8s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_VERBOSE_MAKEFILE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi
+ /usr/bin/cmake --build x86_64-redhat-linux-gnu_openmpi -j2 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi'

Run Build Command(s): /usr/bin/ninja-build -v -j 2
[1/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable=]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[2/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/llnlmath.cpp
[3/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvspgmr.cpp
[4/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[5/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[6/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/iterativ.cpp
[7/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvdiag.cpp
[8/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
[9/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/pvbbdpre.cpp
[10/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/band.cpp
[11/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/de/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/de/libbout.po
[12/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/es/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/es/libbout.po
[13/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/fr/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/fr/libbout.po
[14/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_CN/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_CN/libbout.po
[15/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_TW/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_TW/libbout.po
[16/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=externalpackages/PVODE/CMakeFiles/pvode.dir/link.d -Wl,-soname,libpvode.so.1.0.0 -o lib/libpvode.so.1.0.0 externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,/usr/lib64/openmpi/lib:  /usr/lib64/openmpi/lib/libmpi.so && :
[17/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvode.so.1.0.0 lib/libpvode.so.1.0.0 lib/libpvode.so && :
[18/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=externalpackages/PVODE/CMakeFiles/pvpre.dir/link.d -Wl,-soname,libpvpre.so.1.0.0 -o lib/libpvpre.so.1.0.0 externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/lib:/usr/lib64/openmpi/lib:  lib/libpvode.so.1.0.0  /usr/lib64/openmpi/lib/libmpi.so && :
[19/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvpre.so.1.0.0 lib/libpvpre.so.1.0.0 lib/libpvpre.so && :
[20/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi && /usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/cmake/GenerateDateTimeFile.cmake
[21/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field.cxx
[22/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field2d.cxx
[23/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field3d.cxx
[24/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/bout++.cxx
[25/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field_data.cxx
[26/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/fieldgenerators.cxx
[27/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field_factory.cxx
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[42/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx
[43/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/multigrid/multigrid_solver.cxx
[44/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/naulin/naulin_laplace.cxx
[45/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx: In member function ‘void LaplacePCR::pcr_forward_single_row(Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&) const’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx:821:7: warning: variable ‘dist2_rank’ set but not used [-Wunused-but-set-variable=]
  821 |   int dist2_rank = 2;
      |       ^~~~~~~~~~
[46/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx
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[61/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/cyclic.cxx
[62/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/pardiv/invert_pardiv.cxx
[63/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx
[64/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_region.cxx
[65/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx
[66/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:437:66: note: declared here
  437 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:441:65: note: declared here
  441 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field2d.hxx:35,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[67/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/coordinates_accessor.cxx
[68/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = FieldPerp; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:115:20:   required from here
  115 |     return getField(m, var, name, def, location);
      |            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field2D; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:127:18:   required from here
  127 |   return getField(m, var, name, def, location);
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field3D; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:131:18:   required from here
  131 |   return getField(m, var, name, def, location);
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
[69/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/coordinates.cxx
[70/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromoptions.cxx
[71/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/difops.cxx
[72/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/fv_ops.cxx
[73/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/impls/bout/boutmesh.cxx
[74/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/interpolation_xz.cxx
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[89/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/surfaceiter.cxx
[90/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/gyro_average.cxx
[91/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/smoothing.cxx
[92/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/physicsmodel.cxx
[93/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/snb.cxx
[94/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/sourcex.cxx
[95/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx: In member function ‘virtual int AdamsBashforthSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx:366:7: warning: variable ‘nwasted’ set but not used [-Wunused-but-set-variable=]
  366 |   int nwasted = 0;
      |       ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx:367:7: warning: variable ‘nwasted_following_fail’ set but not used [-Wunused-but-set-variable=]
  367 |   int nwasted_following_fail = 0;
      |       ^~~~~~~~~~~~~~~~~~~~~~
[96/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/arkode/arkode.cxx
[97/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/cvode/cvode.cxx
[98/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/euler/euler.cxx
[99/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/ida/ida.cxx
[100/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx
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[119/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/solver.cxx.o -MF CMakeFiles/bout++.dir/src/solver/solver.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/solver.cxx
[120/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/derivs.cxx
[121/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[122/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/hyprelib.cxx
[123/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/generator_context.cxx
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CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o CMakeFiles/bout++.dir/src/physics/snb.cxx.o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o CMakeFiles/bout++.dir/bout++-time.cxx.o  -Wl,-rpath,/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/lib:  /usr/lib64/openmpi/lib/libpetsc.so  /usr/lib64/libfmt.so.12.1.0  lib/libpvpre.so.1.0.0  /usr/lib64/libnetcdf_c++4.so  /usr/lib64/libfftw3.so  /usr/lib64/libflexiblas.so  -lm  -ldl  -ldl  /usr/lib64/openmpi/lib/libpetsc.so  /usr/lib64/openmpi/lib/libhdf5.so  lib/libpvode.so.1.0.0  /usr/lib64/libnetcdf.so  /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_cvode.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_ida.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_arkode.so.6.6.0  /usr/lib64/openmpi/lib/libsundials_core.so.7.6.0  /usr/lib64/openmpi/lib/libmpi.so && :
[140/151] /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.2.0 lib/libbout++.so.5.2.0 lib/libbout++.so && :
[141/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.cxx
[142/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
[143/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.h
[144/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
[145/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
[146/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx && /usr/bin/python3.14 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2149:0: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
[147/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.cxx
[148/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx
In file included from /usr/include/python3.14/pyconfig.h:6,
                 from /usr/include/python3.14/Python.h:14,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx:2:
/usr/include/python3.14/pyconfig-64.h:2007:9: warning: ‘_POSIX_C_SOURCE’ redefined
 2007 | #define _POSIX_C_SOURCE 200809L
      |         ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/16/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /usr/include/c++/16/x86_64-redhat-linux/bits/c++config.h:2677,
                 from /usr/include/c++/16/bits/version.h:51,
                 from /usr/include/c++/16/compare:40,
                 from /usr/include/c++/16/array:40,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutexception.hxx:6,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx:1:
/usr/include/features.h:319:10: note: this is the location of the previous definition
  319 | # define _POSIX_C_SOURCE        202405L
      |          ^~~~~~~~~~~~~~~
/usr/include/python3.14/pyconfig-64.h:2043:9: warning: ‘_XOPEN_SOURCE’ redefined
 2043 | #define _XOPEN_SOURCE 700
      |         ^~~~~~~~~~~~~
/usr/include/features.h:234:10: note: this is the location of the previous definition
  234 | # define _XOPEN_SOURCE  800
      |          ^~~~~~~~~~~~~
[149/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:37696:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
37696 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[150/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/link.d -Wl,-soname,libboutpp.cpython-314-x86_64-linux-gnu.so -o tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/lib:/usr/lib64/openmpi/lib:  lib/libbout++.so.5.2.0  /usr/lib64/openmpi/lib/libpetsc.so  /usr/lib64/openmpi/lib/libpetsc.so  /usr/lib64/openmpi/lib/libhdf5.so  /usr/lib64/libfmt.so.12.1.0  lib/libpvpre.so.1.0.0  lib/libpvode.so.1.0.0  /usr/lib64/libnetcdf_c++4.so  /usr/lib64/libnetcdf.so  /usr/lib64/libfftw3.so  /usr/lib64/libflexiblas.so  -lm  -ldl  /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_cvode.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_ida.so.7.6.0  /usr/lib64/openmpi/lib/libsundials_arkode.so.6.6.0  /usr/lib64/openmpi/lib/libsundials_core.so.7.6.0  /usr/lib64/openmpi/lib/libmpi.so  -ldl && :
[151/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py

+ /usr/bin/cmake --build x86_64-redhat-linux-gnu_openmpi -j2 --verbose -t docs
Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi'

Run Build Command(s): /usr/bin/ninja-build -v -j 2 docs
[1/1] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib: /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/index.html
Running Sphinx v9.1.0
breathe module not installed
recommonmark module not installed
loading translations [en]... done
making output directory... done
Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`.
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 48 source files that are out of date
updating environment: [new config] 48 added, 0 changed, 0 removed
reading sources... [  2%] _apidoc/boutdata
reading sources... [  4%] _apidoc/boutpp
reading sources... [  6%] _apidoc/boututils
No mlab available
reading sources... [  8%] _apidoc/zoidberg
reading sources... [ 10%] api_reference
reading sources... [ 12%] developer_docs/code_layout
reading sources... [ 15%] developer_docs/contributing
reading sources... [ 17%] developer_docs/data_types
reading sources... [ 19%] developer_docs/debugging
reading sources... [ 21%] developer_docs/file_io
reading sources... [ 23%] developer_docs/git_basics
reading sources... [ 25%] developer_docs/mesh
reading sources... [ 27%] developer_docs/natural_language
reading sources... [ 29%] developer_docs/performance_profiling
reading sources... [ 31%] developer_docs/petsc_interface
reading sources... [ 33%] index
reading sources... [ 35%] user_docs/BOUT_Gradperp_op
reading sources... [ 38%] user_docs/adios2
reading sources... [ 40%] user_docs/advanced_install
reading sources... [ 42%] user_docs/algebraic_operators
reading sources... [ 44%] user_docs/boundary_options
reading sources... [ 46%] user_docs/bout_functions_for_physics
reading sources... [ 48%] user_docs/bout_options
reading sources... [ 50%] user_docs/coordinates
reading sources... [ 52%] user_docs/differential_operators
reading sources... [ 54%] user_docs/eigenvalue_solver
reading sources... [ 56%] user_docs/gpu_support
reading sources... [ 58%] user_docs/input_grids
reading sources... [ 60%] user_docs/installing
reading sources... [ 62%] user_docs/introduction
reading sources... [ 65%] user_docs/invertable_operator
reading sources... [ 67%] user_docs/laplacian
reading sources... [ 69%] user_docs/makefiles
reading sources... [ 71%] user_docs/new_in_v5
reading sources... [ 73%] user_docs/nonlocal
reading sources... [ 75%] user_docs/output_and_post
reading sources... [ 77%] user_docs/parallel-transforms
reading sources... [ 79%] user_docs/petsc
reading sources... [ 81%] user_docs/physics_models
reading sources... [ 83%] user_docs/preconditioning
reading sources... [ 85%] user_docs/python
reading sources... [ 88%] user_docs/python_boutpp
reading sources... [ 90%] user_docs/quickstart
reading sources... [ 92%] user_docs/running_bout
reading sources... [ 94%] user_docs/staggered_grids
reading sources... [ 96%] user_docs/testing
reading sources... [ 98%] user_docs/time_integration
reading sources... [100%] user_docs/variable_init

WARNING: autodoc: failed to import 'cbdtoeqdsk' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.cbdtoeqdsk'
 [autodoc.import_object]
<unknown>:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import 'gen_surface' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.gen_surface'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'input' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.input'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'mayavi2' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.mayavi2'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. [docutils]
/usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
WARNING: autodoc: failed to import 'settings' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.settings'
 [autodoc.import_object]
docstring of libboutpp.Laplacian:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. [docutils]
docstring of libboutpp.Laplacian:6: ERROR: Unknown target name: "abla". [docutils]
WARNING: autodoc: failed to import 'analyse_equil_2' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.analyse_equil_2'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'anim' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/anim.py", line 19, in <module>
    from tvtk.tools import visual
ModuleNotFoundError: No module named 'tvtk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'ask' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.ask'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'boutgrid' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/boutgrid.py", line 3, in <module>
    from tvtk.api import tvtk
ModuleNotFoundError: No module named 'tvtk'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. [docutils]
WARNING: autodoc: failed to import 'closest_line' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.closest_line'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'crosslines' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.crosslines'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'efit_analyzer' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.efit_analyzer'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'fft_deriv' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.fft_deriv'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'file_import' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.file_import'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'geqdsk' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.geqdsk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'idl_tabulate' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.idl_tabulate'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'int_func' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/int_func.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'local_min_max' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.local_min_max'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'mode_structure' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/mode_structure.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'moment_xyzt' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/moment_xyzt.py", line 2, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'options' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.options'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'radial_grid' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.radial_grid'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'read_geqdsk' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.read_geqdsk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'spectrogram' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/spectrogram.py", line 10, in <module>
    from scipy import fftpack, pi
ImportError: cannot import name 'pi' from 'scipy' (/usr/lib64/python3.14/site-packages/scipy/__init__.py)
 [autodoc.import_object]
WARNING: autodoc: failed to import 'surface_average' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/surface_average.py", line 5, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'volume_integral' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/volume_integral.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'watch' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.watch'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. [docutils]
<unknown>:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. [docutils]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. [ref.footnote]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
<unknown>:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.dims_from_type, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.get_dims_type, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.type_from_dims, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.alwayswarn, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.build_and_log, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.determineNumberOfCPUs, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.launch, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.launch_safe, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.shell, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.shell_safe, other instance in _apidoc/boutdata, use :no-index: for one of them
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
done
copying assets... 
copying static files... 
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/_static/language_data.js
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/_static/documentation_options.js
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/_static/basic.css
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/_static/sphinxdoc.css
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  2%] _apidoc/boutdata
writing output... [  4%] _apidoc/boutpp
writing output... [  6%] _apidoc/boututils
writing output... [  8%] _apidoc/zoidberg
writing output... [ 10%] api_reference
writing output... [ 12%] developer_docs/code_layout
writing output... [ 15%] developer_docs/contributing
writing output... [ 17%] developer_docs/data_types
writing output... [ 19%] developer_docs/debugging
writing output... [ 21%] developer_docs/file_io
writing output... [ 23%] developer_docs/git_basics
writing output... [ 25%] developer_docs/mesh
writing output... [ 27%] developer_docs/natural_language
writing output... [ 29%] developer_docs/performance_profiling
writing output... [ 31%] developer_docs/petsc_interface
writing output... [ 33%] index
writing output... [ 35%] user_docs/BOUT_Gradperp_op
writing output... [ 38%] user_docs/adios2
writing output... [ 40%] user_docs/advanced_install
writing output... [ 42%] user_docs/algebraic_operators
writing output... [ 44%] user_docs/boundary_options
writing output... [ 46%] user_docs/bout_functions_for_physics
writing output... [ 48%] user_docs/bout_options
writing output... [ 50%] user_docs/coordinates
writing output... [ 52%] user_docs/differential_operators
writing output... [ 54%] user_docs/eigenvalue_solver
writing output... [ 56%] user_docs/gpu_support
writing output... [ 58%] user_docs/input_grids
writing output... [ 60%] user_docs/installing
writing output... [ 62%] user_docs/introduction
writing output... [ 65%] user_docs/invertable_operator
writing output... [ 67%] user_docs/laplacian
writing output... [ 69%] user_docs/makefiles
writing output... [ 71%] user_docs/new_in_v5
writing output... [ 73%] user_docs/nonlocal
writing output... [ 75%] user_docs/output_and_post
writing output... [ 77%] user_docs/parallel-transforms
writing output... [ 79%] user_docs/petsc
writing output... [ 81%] user_docs/physics_models
writing output... [ 83%] user_docs/preconditioning
writing output... [ 85%] user_docs/python
writing output... [ 88%] user_docs/python_boutpp
writing output... [ 90%] user_docs/quickstart
writing output... [ 92%] user_docs/running_bout
writing output... [ 94%] user_docs/staggered_grids
writing output... [ 96%] user_docs/testing
writing output... [ 98%] user_docs/time_integration
writing output... [100%] user_docs/variable_init

/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField:23: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField:23: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode. [misc.highlighting_failure]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake' [ref.ref]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/time_integration.rst:1087: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
generating indices... genindex py-modindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 157 warnings.

The HTML pages are in docs.
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/manual/docs/index.html

+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/mpich
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu_mpich -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/mpich -DCMAKE_INSTALL_LIBDIR:PATH=lib -DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include/mpich-x86_64/bout++/ -DCMAKE_INSTALL_PYTHON_SITEARCH:PATH=/usr/lib64/python3.14/site-packages/mpich -DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share -DBOUT_ENABLE_MPI:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.1
-- The CXX compiler identification is GNU 16.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.14 (found version "3.14.4") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:397 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "2.4.4")
-- Found Cython: TRUE (found version "3.2.4")
-- Found Bash: /usr/bin/bash (found version "5.3.9")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/mpich-x86_64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- The C compiler identification is GNU 16.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.3")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "1.0")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.16.1") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich` to compile BOUT++ ***

-- Configuring done (3.8s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_VERBOSE_MAKEFILE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich
+ /usr/bin/cmake --build x86_64-redhat-linux-gnu_mpich -j2 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich'

Run Build Command(s): /usr/bin/ninja-build -v -j 2
[1/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable=]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[2/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/llnlmath.cpp
[3/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvspgmr.cpp
[4/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[5/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[6/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/iterativ.cpp
[7/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
[8/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvdiag.cpp
[9/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/pvbbdpre.cpp
[10/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/band.cpp
[11/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/de/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/de/libbout.po
[12/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/es/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/es/libbout.po
[13/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/fr/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/fr/libbout.po
[14/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_CN/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_CN/libbout.po
[15/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_TW/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_TW/libbout.po
[16/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=externalpackages/PVODE/CMakeFiles/pvode.dir/link.d -Wl,-soname,libpvode.so.1.0.0 -o lib/libpvode.so.1.0.0 externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,/usr/lib64/mpich/lib:  /usr/lib64/mpich/lib/libmpicxx.so  /usr/lib64/mpich/lib/libmpi.so && :
[17/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvode.so.1.0.0 lib/libpvode.so.1.0.0 lib/libpvode.so && :
[18/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=externalpackages/PVODE/CMakeFiles/pvpre.dir/link.d -Wl,-soname,libpvpre.so.1.0.0 -o lib/libpvpre.so.1.0.0 externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/lib:/usr/lib64/mpich/lib:  lib/libpvode.so.1.0.0  /usr/lib64/mpich/lib/libmpicxx.so  /usr/lib64/mpich/lib/libmpi.so && :
[19/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvpre.so.1.0.0 lib/libpvpre.so.1.0.0 lib/libpvpre.so && :
[20/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich && /usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/cmake/GenerateDateTimeFile.cmake
[21/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field.cxx
[22/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field2d.cxx
[23/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/field3d.cxx
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[44/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/naulin/naulin_laplace.cxx
[45/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx: In member function ‘void LaplacePCR::pcr_forward_single_row(Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&, Matrix<std::complex<double> >&) const’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/pcr.cxx:821:7: warning: variable ‘dist2_rank’ set but not used [-Wunused-but-set-variable=]
  821 |   int dist2_rank = 2;
      |       ^~~~~~~~~~
[46/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx
[47/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx
[48/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/serial_band/serial_band.cxx
[49/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/serial_tri/serial_tri.cxx
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[64/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_region.cxx
[65/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx
[66/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:437:66: note: declared here
  437 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:441:65: note: declared here
  441 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field2d.hxx:35,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[67/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/coordinates_accessor.cxx
[68/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = FieldPerp; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:115:20:   required from here
  115 |     return getField(m, var, name, def, location);
      |            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field2D; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:127:18:   required from here
  127 |   return getField(m, var, name, def, location);
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field3D; std::string = std::__cxx11::basic_string<char>; BoutReal = double]’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:131:18:   required from here
  131 |   return getField(m, var, name, def, location);
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=]
  211 |   int total_grid_yguards = 2 * grid_yguards;
      |       ^~~~~~~~~~~~~~~~~~
[69/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/coordinates.cxx
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[71/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/difops.cxx
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[91/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/smoothing.cxx
[92/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/physicsmodel.cxx
[93/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/snb.cxx
[94/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/sourcex.cxx
[95/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx: In member function ‘virtual int AdamsBashforthSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx:366:7: warning: variable ‘nwasted’ set but not used [-Wunused-but-set-variable=]
  366 |   int nwasted = 0;
      |       ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx:367:7: warning: variable ‘nwasted_following_fail’ set but not used [-Wunused-but-set-variable=]
  367 |   int nwasted_following_fail = 0;
      |       ^~~~~~~~~~~~~~~~~~~~~~
[96/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/arkode/arkode.cxx
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[98/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/euler/euler.cxx
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[120/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/derivs.cxx
[121/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[122/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/hyprelib.cxx
[123/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/generator_context.cxx
[124/151] /usr/bin/g++ -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/msg_stack.cxx
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CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o CMakeFiles/bout++.dir/src/physics/snb.cxx.o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o CMakeFiles/bout++.dir/bout++-time.cxx.o  -Wl,-rpath,/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/lib:  /usr/lib64/mpich/lib/libpetsc.so  /usr/lib64/libfmt.so.12.1.0  lib/libpvpre.so.1.0.0  /usr/lib64/libnetcdf_c++4.so  /usr/lib64/libfftw3.so  /usr/lib64/libflexiblas.so  -lm  -ldl  -ldl  /usr/lib64/mpich/lib/libpetsc.so  /usr/lib64/mpich/lib/libhdf5.so  lib/libpvode.so.1.0.0  /usr/lib64/libnetcdf.so  /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.6.0  /usr/lib64/mpich/lib/libsundials_cvode.so.7.6.0  /usr/lib64/mpich/lib/libsundials_ida.so.7.6.0  /usr/lib64/mpich/lib/libsundials_arkode.so.6.6.0  /usr/lib64/mpich/lib/libsundials_core.so.7.6.0  /usr/lib64/mpich/lib/libmpicxx.so  /usr/lib64/mpich/lib/libmpi.so && :
[140/151] /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.2.0 lib/libbout++.so.5.2.0 lib/libbout++.so && :
[141/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
[142/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.cxx
[143/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.h
[144/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutpp.pyx
[145/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
[146/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx && /usr/bin/python3.14 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2149:0: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
[147/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.cxx
[148/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx
In file included from /usr/include/python3.14/pyconfig.h:6,
                 from /usr/include/python3.14/Python.h:14,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx:2:
/usr/include/python3.14/pyconfig-64.h:2007:9: warning: ‘_POSIX_C_SOURCE’ redefined
 2007 | #define _POSIX_C_SOURCE 200809L
      |         ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/16/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /usr/include/c++/16/x86_64-redhat-linux/bits/c++config.h:2677,
                 from /usr/include/c++/16/bits/version.h:51,
                 from /usr/include/c++/16/compare:40,
                 from /usr/include/c++/16/array:40,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutexception.hxx:6,
                 from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx:1:
/usr/include/features.h:319:10: note: this is the location of the previous definition
  319 | # define _POSIX_C_SOURCE        202405L
      |          ^~~~~~~~~~~~~~~
/usr/include/python3.14/pyconfig-64.h:2043:9: warning: ‘_XOPEN_SOURCE’ redefined
 2043 | #define _XOPEN_SOURCE 700
      |         ^~~~~~~~~~~~~
/usr/include/features.h:234:10: note: this is the location of the previous definition
  234 | # define _XOPEN_SOURCE  800
      |          ^~~~~~~~~~~~~
[149/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:37696:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
37696 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[150/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG  -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/link.d -Wl,-soname,libboutpp.cpython-314-x86_64-linux-gnu.so -o tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/lib:/usr/lib64/mpich/lib:  lib/libbout++.so.5.2.0  /usr/lib64/mpich/lib/libpetsc.so  /usr/lib64/mpich/lib/libpetsc.so  /usr/lib64/mpich/lib/libhdf5.so  /usr/lib64/libfmt.so.12.1.0  lib/libpvpre.so.1.0.0  lib/libpvode.so.1.0.0  /usr/lib64/libnetcdf_c++4.so  /usr/lib64/libnetcdf.so  /usr/lib64/libfftw3.so  /usr/lib64/libflexiblas.so  -lm  -ldl  /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.6.0  /usr/lib64/mpich/lib/libsundials_cvode.so.7.6.0  /usr/lib64/mpich/lib/libsundials_ida.so.7.6.0  /usr/lib64/mpich/lib/libsundials_arkode.so.6.6.0  /usr/lib64/mpich/lib/libsundials_core.so.7.6.0  /usr/lib64/mpich/lib/libmpicxx.so  /usr/lib64/mpich/lib/libmpi.so  -ldl && :
[151/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py

+ /usr/bin/cmake --build x86_64-redhat-linux-gnu_mpich -j2 --verbose -t docs
Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich'

Run Build Command(s): /usr/bin/ninja-build -v -j 2 docs
[1/1] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib: /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/index.html
Running Sphinx v9.1.0
breathe module not installed
recommonmark module not installed
loading translations [en]... done
making output directory... done
Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`.
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 48 source files that are out of date
updating environment: [new config] 48 added, 0 changed, 0 removed
reading sources... [  2%] _apidoc/boutdata
reading sources... [  4%] _apidoc/boutpp
reading sources... [  6%] _apidoc/boututils
No mlab available
reading sources... [  8%] _apidoc/zoidberg
reading sources... [ 10%] api_reference
reading sources... [ 12%] developer_docs/code_layout
reading sources... [ 15%] developer_docs/contributing
reading sources... [ 17%] developer_docs/data_types
reading sources... [ 19%] developer_docs/debugging
reading sources... [ 21%] developer_docs/file_io
reading sources... [ 23%] developer_docs/git_basics
reading sources... [ 25%] developer_docs/mesh
reading sources... [ 27%] developer_docs/natural_language
reading sources... [ 29%] developer_docs/performance_profiling
reading sources... [ 31%] developer_docs/petsc_interface
reading sources... [ 33%] index
reading sources... [ 35%] user_docs/BOUT_Gradperp_op
reading sources... [ 38%] user_docs/adios2
reading sources... [ 40%] user_docs/advanced_install
reading sources... [ 42%] user_docs/algebraic_operators
reading sources... [ 44%] user_docs/boundary_options
reading sources... [ 46%] user_docs/bout_functions_for_physics
reading sources... [ 48%] user_docs/bout_options
reading sources... [ 50%] user_docs/coordinates
reading sources... [ 52%] user_docs/differential_operators
reading sources... [ 54%] user_docs/eigenvalue_solver
reading sources... [ 56%] user_docs/gpu_support
reading sources... [ 58%] user_docs/input_grids
reading sources... [ 60%] user_docs/installing
reading sources... [ 62%] user_docs/introduction
reading sources... [ 65%] user_docs/invertable_operator
reading sources... [ 67%] user_docs/laplacian
reading sources... [ 69%] user_docs/makefiles
reading sources... [ 71%] user_docs/new_in_v5
reading sources... [ 73%] user_docs/nonlocal
reading sources... [ 75%] user_docs/output_and_post
reading sources... [ 77%] user_docs/parallel-transforms
reading sources... [ 79%] user_docs/petsc
reading sources... [ 81%] user_docs/physics_models
reading sources... [ 83%] user_docs/preconditioning
reading sources... [ 85%] user_docs/python
reading sources... [ 88%] user_docs/python_boutpp
reading sources... [ 90%] user_docs/quickstart
reading sources... [ 92%] user_docs/running_bout
reading sources... [ 94%] user_docs/staggered_grids
reading sources... [ 96%] user_docs/testing
reading sources... [ 98%] user_docs/time_integration
reading sources... [100%] user_docs/variable_init

WARNING: autodoc: failed to import 'cbdtoeqdsk' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.cbdtoeqdsk'
 [autodoc.import_object]
<unknown>:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import 'gen_surface' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.gen_surface'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'input' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.input'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'mayavi2' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.mayavi2'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. [docutils]
/usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
WARNING: autodoc: failed to import 'settings' from module 'boutdata'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boutdata.settings'
 [autodoc.import_object]
docstring of libboutpp.Laplacian:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. [docutils]
docstring of libboutpp.Laplacian:6: ERROR: Unknown target name: "abla". [docutils]
WARNING: autodoc: failed to import 'analyse_equil_2' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.analyse_equil_2'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'anim' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/anim.py", line 19, in <module>
    from tvtk.tools import visual
ModuleNotFoundError: No module named 'tvtk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'ask' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.ask'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'boutgrid' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/boutgrid.py", line 3, in <module>
    from tvtk.api import tvtk
ModuleNotFoundError: No module named 'tvtk'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. [docutils]
WARNING: autodoc: failed to import 'closest_line' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.closest_line'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'crosslines' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.crosslines'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'efit_analyzer' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.efit_analyzer'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'fft_deriv' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.fft_deriv'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'file_import' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.file_import'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'geqdsk' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.geqdsk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'idl_tabulate' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.idl_tabulate'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'int_func' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/int_func.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'local_min_max' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.local_min_max'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'mode_structure' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/mode_structure.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'moment_xyzt' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/moment_xyzt.py", line 2, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'options' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.options'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'radial_grid' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.radial_grid'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'read_geqdsk' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.read_geqdsk'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'spectrogram' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/spectrogram.py", line 10, in <module>
    from scipy import fftpack, pi
ImportError: cannot import name 'pi' from 'scipy' (/usr/lib64/python3.14/site-packages/scipy/__init__.py)
 [autodoc.import_object]
WARNING: autodoc: failed to import 'surface_average' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/surface_average.py", line 5, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'volume_integral' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module
    module = importlib.import_module(modname)
  File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1406, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 759, in exec_module
  File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
  File "/usr/lib/python3.14/site-packages/boututils/volume_integral.py", line 4, in <module>
    from past.utils import old_div
ModuleNotFoundError: No module named 'past'
 [autodoc.import_object]
WARNING: autodoc: failed to import 'watch' from module 'boututils'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path
    module = _import_module(module_name, try_reload=True)
  File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module
    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'boututils.watch'
 [autodoc.import_object]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. [docutils]
<unknown>:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. [docutils]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. [ref.footnote]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation. [docutils]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
<unknown>:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.dims_from_type, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.get_dims_type, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.BoutArray.type_from_dims, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.alwayswarn, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.build_and_log, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.determineNumberOfCPUs, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.launch, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.launch_safe, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.shell, other instance in _apidoc/boutdata, use :no-index: for one of them
<unknown>:1: WARNING: duplicate object description of boutdata.shell_safe, other instance in _apidoc/boutdata, use :no-index: for one of them
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
done
copying assets... 
copying static files... 
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/_static/language_data.js
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/_static/documentation_options.js
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/_static/basic.css
Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/_static/sphinxdoc.css
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  2%] _apidoc/boutdata
writing output... [  4%] _apidoc/boutpp
writing output... [  6%] _apidoc/boututils
writing output... [  8%] _apidoc/zoidberg
writing output... [ 10%] api_reference
writing output... [ 12%] developer_docs/code_layout
writing output... [ 15%] developer_docs/contributing
writing output... [ 17%] developer_docs/data_types
writing output... [ 19%] developer_docs/debugging
writing output... [ 21%] developer_docs/file_io
writing output... [ 23%] developer_docs/git_basics
writing output... [ 25%] developer_docs/mesh
writing output... [ 27%] developer_docs/natural_language
writing output... [ 29%] developer_docs/performance_profiling
writing output... [ 31%] developer_docs/petsc_interface
writing output... [ 33%] index
writing output... [ 35%] user_docs/BOUT_Gradperp_op
writing output... [ 38%] user_docs/adios2
writing output... [ 40%] user_docs/advanced_install
writing output... [ 42%] user_docs/algebraic_operators
writing output... [ 44%] user_docs/boundary_options
writing output... [ 46%] user_docs/bout_functions_for_physics
writing output... [ 48%] user_docs/bout_options
writing output... [ 50%] user_docs/coordinates
writing output... [ 52%] user_docs/differential_operators
writing output... [ 54%] user_docs/eigenvalue_solver
writing output... [ 56%] user_docs/gpu_support
writing output... [ 58%] user_docs/input_grids
writing output... [ 60%] user_docs/installing
writing output... [ 62%] user_docs/introduction
writing output... [ 65%] user_docs/invertable_operator
writing output... [ 67%] user_docs/laplacian
writing output... [ 69%] user_docs/makefiles
writing output... [ 71%] user_docs/new_in_v5
writing output... [ 73%] user_docs/nonlocal
writing output... [ 75%] user_docs/output_and_post
writing output... [ 77%] user_docs/parallel-transforms
writing output... [ 79%] user_docs/petsc
writing output... [ 81%] user_docs/physics_models
writing output... [ 83%] user_docs/preconditioning
writing output... [ 85%] user_docs/python
writing output... [ 88%] user_docs/python_boutpp
writing output... [ 90%] user_docs/quickstart
writing output... [ 92%] user_docs/running_bout
writing output... [ 94%] user_docs/staggered_grids
writing output... [ 96%] user_docs/testing
writing output... [ 98%] user_docs/time_integration
writing output... [100%] user_docs/variable_init

/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField:23: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField:23: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'x': boutpp.Vector2D.x, boutpp.Vector3D.x [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/_apidoc/zoidberg.rst:27: WARNING: more than one target found for cross-reference 'z': boutpp.Vector2D.z, boutpp.Vector3D.z [ref.python]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode. [misc.highlighting_failure]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake' [ref.ref]
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/time_integration.rst:1087: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc]
generating indices... genindex py-modindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 157 warnings.

The HTML pages are in docs.
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/manual/docs/index.html

+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MASj7H
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0-build
+ '[' /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0-build
+ mkdir /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ /usr/bin/cmake --install x86_64-redhat-linux-gnu_openmpi
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so" to "/usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "/usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "/usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODEConfig.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODEConfig-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.2.0
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-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/where.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vecops.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/stencils.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/optionsreader.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/fieldperp.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/where.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/vecops.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sundials_backports.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/solverfactory.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/slepclib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/scorepwrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/rkscheme.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/region.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/physicsmodel.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/petsclib.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/paralleltransform.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/output_bout_types.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/options.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invertable_operator.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy2_hypre.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/interpolation_xz.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/griddata.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/dcomplex.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/coordinates_accessor.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/adios_object.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_factory.hxx
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/build_defines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/revision.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/version.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/update_version_number_in_files.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/update_citations.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout_4to5
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout_3to4.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-header-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-format-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-stop-script
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-sonnet
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-log-color
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-changelog-generator.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-build-deps.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-boutdata-restart-create
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-archive-helper.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-add-mod-path
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-config
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutconfig/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ /usr/bin/cmake --install x86_64-redhat-linux-gnu_openmpi --component docs
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//searchindex.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/init_balloon.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/stagLocations.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/quickstart_conduction_example.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/sod_result.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/interchange_inst_test.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/snb-step.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/snb-sinusoidal.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/par_laplace.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/poincare.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/elliptic_grid.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/grid_gen.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/topology_schematic.svg
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/diffStencils.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/memory.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/layout2.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/layout1.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//search.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//genindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/makefiles.html
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+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/mpich
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ /usr/bin/cmake --install x86_64-redhat-linux-gnu_mpich
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so" to "/usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "/usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "/usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODEConfig.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODEConfig-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.2.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.2.0" to "/usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/where.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boutcomm.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-config
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutconfig/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
+ /usr/bin/cmake --install x86_64-redhat-linux-gnu_mpich --component docs
-- Install configuration: "RelWithDebInfo"
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//searchindex.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/init_balloon.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/stagLocations.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/quickstart_conduction_example.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/sod_result.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/interchange_inst_test.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/snb-step.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/snb-sinusoidal.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/par_laplace.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/poincare.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/elliptic_grid.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/grid_gen.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/topology_schematic.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/diffStencils.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/memory.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/layout2.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_images/layout1.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//search.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//genindex.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/makefiles.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/laplacian.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/gpu_support.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/bout_functions_for_physics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/boundary_options.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/algebraic_operators.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/advanced_install.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/adios2.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//index.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/debugging.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//api_reference.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutdata.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/css/custom.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/contents.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/basic.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/documentation_options.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/language_data.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++//_static/minus.png
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+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT libbout
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.2.0-11.fc45 --unique-debug-suffix -5.2.0-11.fc45.x86_64 --unique-debug-src-base bout++-5.2.0-11.fc45.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.2.0-11.fc45.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/update_citations.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/update_version_number_in_files.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/update_citations.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/update_version_number_in_files.py from /usr/bin/env python3 to #!/usr/bin/python3
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.14 using python3.14
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14 using python3.14
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j2 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutconfig/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutconfig/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents
Scanned 166 directories and 890 files,
    processed 55 inodes,
    4 modified (0 replaced + 4 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr
Scanned 165 directories and 890 files,
    considered 884 files, read 539 files, linked 313 files, 0 errors
    sum of sizes of linked files: 6174656 bytes
Reading /builddir/build/BUILD/bout++-5.2.0-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.O2tdMJ
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0
+ for mpi in openmpi mpich
+ fail=1
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=$' \t\n'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode=$'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=$' \t\n'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval $'_module_raw() {\n   eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n   _mlstatus=$?;\n   return $_mlstatus;\n};\nmodule() {\n   local _mlredir=0;\n   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n      if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n         _mlredir=0;\n      elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n         _mlredir=1;\n      fi;\n   fi;\n   case " $@ " in\n      *\' --no-redirect \'*) _mlredir=0 ;;\n      *\' --redirect \'*) _mlredir=1 ;;\n   esac;\n   if [ $_mlredir -eq 0 ]; then\n      _module_raw "$@";\n   else\n      _module_raw "$@" 2>&1;\n   fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export OMPI_ALLOW_RUN_AS_ROOT=1
+ OMPI_ALLOW_RUN_AS_ROOT=1
+ export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
+ OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
#!/bin/bash

# Cores: 3

make || exit

test -z $MPIRUN  && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization

e=$?

if test $e -ne 0
then
    echo "The test failed. That can be caused by a timeout."
    echo "If this test is run on high load, it may fail occasionally."
    echo "The load is:"
    uptime
fi

exit $e
+ SEGFAULT_SIGNALS=segv
+ /usr/bin/ctest --test-dir x86_64-redhat-linux-gnu_openmpi --output-on-failure --force-new-ctest-process -j2 -R seral_tests
Test project /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi
No tests were found!!!
+ SEGFAULT_SIGNALS=segv
+ /usr/bin/ctest --test-dir x86_64-redhat-linux-gnu_openmpi --output-on-failure --force-new-ctest-process -j2 -R MMS-
Test project /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi
    Start 53: MMS-diffusion
    Start 55: MMS-wave-1d
1/8 Test #55: MMS-wave-1d ......................   Passed   24.76 sec
    Start 56: MMS-wave-1d-y
2/8 Test #53: MMS-diffusion ....................   Passed   26.57 sec
    Start 57: MMS-bracket
3/8 Test #57: MMS-bracket ......................   Passed    1.44 sec
    Start 58: MMS-derivatives3
4/8 Test #58: MMS-derivatives3 .................   Passed    1.91 sec
    Start 59: MMS-shiftedmetricinterp
5/8 Test #59: MMS-shiftedmetricinterp ..........   Passed    4.84 sec
    Start 60: MMS-upwinding3
6/8 Test #60: MMS-upwinding3 ...................   Passed    2.28 sec
7/8 Test #56: MMS-wave-1d-y ....................   Passed   18.11 sec
    Start 54: MMS-spatial-fci
8/8 Test #54: MMS-spatial-fci ..................   Passed   15.04 sec

100% tests passed, 0 tests failed out of 8

Total Test time (real) =  57.93 sec
+ SEGFAULT_SIGNALS=segv
+ /usr/bin/ctest --test-dir x86_64-redhat-linux-gnu_openmpi --output-on-failure --force-new-ctest-process -j2 -R test-
Test project /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi
      Start  2: test-backtrace
      Start  4: test-boutpp-collect
 1/50 Test  #4: test-boutpp-collect .................   Passed    1.53 sec
      Start  5: test-boutpp-collect-staggered
 2/50 Test  #2: test-backtrace ......................   Passed    2.19 sec
      Start  6: test-boutpp-legacy-model
 3/50 Test  #5: test-boutpp-collect-staggered .......   Passed    1.57 sec
      Start  7: test-boutpp-mms-ddz
 4/50 Test  #6: test-boutpp-legacy-model ............   Passed    1.67 sec
      Start  8: test-boutpp-print
 5/50 Test  #7: test-boutpp-mms-ddz .................   Passed    1.42 sec
      Start  9: test-boutpp-simple-model
 6/50 Test  #8: test-boutpp-print ...................   Passed    1.42 sec
      Start 10: test-bout-override-default-option
Could not find executable /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
Looked in the following places:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Release/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Release/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Debug/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Debug/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/MinSizeRel/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/MinSizeRel/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/RelWithDebInfo/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/RelWithDebInfo/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Deployment/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Deployment/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Development/test-bout-override-default-option
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Development/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Release/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Release/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Debug/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Debug/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/MinSizeRel/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/MinSizeRel/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/RelWithDebInfo/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/RelWithDebInfo/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Deployment/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Deployment/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Development/test-bout-override-default-option
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/Development/test-bout-override-default-option
 7/50 Test #10: test-bout-override-default-option ...***Not Run   0.00 sec
      Start 11: test-command-args
Unable to find executable: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-bout-override-default-option/test-bout-override-default-option
 8/50 Test  #9: test-boutpp-simple-model ............   Passed    1.73 sec
      Start 20: test-fci-boundary
 9/50 Test #20: test-fci-boundary ...................***Failed    0.42 sec
Traceback (most recent call last):
  File "/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-fci-boundary/runtest", line 31, in <module>
    with DataFile("grid.fci.nc") as grid:
         ~~~~~~~~^^^^^^^^^^^^^^^
  File "/usr/lib/python3.14/site-packages/boututils/datafile.py", line 98, in __init__
    self.impl = DataFile_netCDF(
                ~~~~~~~~~~~~~~~^
        filename=filename,
        ^^^^^^^^^^^^^^^^^^
    ...<3 lines>...
        **kwargs,
        ^^^^^^^^^
    )
    ^
  File "/usr/lib/python3.14/site-packages/boututils/datafile.py", line 379, in __init__
    self.open(filename, write=write, create=create, format=format)
    ~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.14/site-packages/boututils/datafile.py", line 353, in open
    self.handle = Dataset(filename, "r")
                  ~~~~~~~^^^^^^^^^^^^^^^
  File "src/netCDF4/_netCDF4.pyx", line 2517, in netCDF4._netCDF4.Dataset.__init__
  File "src/netCDF4/_netCDF4.pyx", line 2154, in netCDF4._netCDF4._ensure_nc_success
FileNotFoundError: [Errno 2] No such file or directory: 'grid.fci.nc'

      Start 21: test-griddata
10/50 Test #21: test-griddata .......................   Passed    5.92 sec
      Start 26: test-interpolate
11/50 Test #11: test-command-args ...................   Passed   18.99 sec
      Start 27: test-interpolate-z
12/50 Test #27: test-interpolate-z ..................   Passed   14.81 sec
      Start 31: test-laplace-petsc3d
13/50 Test #26: test-interpolate ....................   Passed   27.85 sec
      Start 34: test-laplacexz
14/50 Test #34: test-laplacexz ......................   Passed   18.11 sec
      Start 37: test-options-netcdf
15/50 Test #31: test-laplace-petsc3d ................   Passed   26.65 sec
      Start 41: test-restarting
16/50 Test #37: test-options-netcdf .................   Passed    8.17 sec
      Start 43: test-snb
Could not find executable /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
Looked in the following places:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Release/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Release/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Debug/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Debug/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/MinSizeRel/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/MinSizeRel/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/RelWithDebInfo/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/RelWithDebInfo/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Deployment/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Deployment/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Development/test_snb
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Development/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Release/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Release/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Debug/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Debug/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/MinSizeRel/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/MinSizeRel/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/RelWithDebInfo/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/RelWithDebInfo/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Deployment/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Deployment/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Development/test_snb
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/Development/test_snb
17/50 Test #43: test-snb ............................***Not Run   0.00 sec
      Start 44: test-solver
Could not find executable /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
Looked in the following places:
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Release/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Release/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Debug/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Debug/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/MinSizeRel/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/MinSizeRel/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/RelWithDebInfo/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/RelWithDebInfo/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Deployment/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Deployment/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Development/test_solver
/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Development/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Release/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Release/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Debug/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Debug/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/MinSizeRel/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/MinSizeRel/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/RelWithDebInfo/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/RelWithDebInfo/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Deployment/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Deployment/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Development/test_solver
builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/Development/test_solver
18/50 Test #44: test-solver .........................***Not Run   0.00 sec
      Start 46: test-stopCheck
Unable to find executable: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-snb/test_snb
Unable to find executable: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/integrated/test-solver/test_solver
19/50 Test #46: test-stopCheck ......................***Failed    0.01 sec
make: *** No targets specified and no makefile found.  Stop.

      Start 47: test-stopCheck-file
20/50 Test #41: test-restarting .....................   Passed   12.85 sec
      Start 48: test-twistshift
21/50 Test #47: test-stopCheck-file .................   Passed   12.36 sec
      Start 49: test-twistshift-staggered
22/50 Test #48: test-twistshift .....................   Passed    5.38 sec
      Start 51: test-yupdown
23/50 Test #49: test-twistshift-staggered ...........   Passed    5.32 sec
      Start 52: test-yupdown-weights
24/50 Test #52: test-yupdown-weights ................   Passed    5.65 sec
25/50 Test #51: test-yupdown ........................   Passed    7.82 sec
      Start 12: test-communications
26/50 Test #12: test-communications .................   Passed   15.23 sec
      Start 13: test-coordinates-initialization
27/50 Test #13: test-coordinates-initialization .....***Failed    0.00 sec
make: *** No targets specified and no makefile found.  Stop.

      Start 14: test-cyclic
28/50 Test #14: test-cyclic .........................   Passed   26.78 sec
      Start 15: test-delp2
29/50 Test #15: test-delp2 ..........................   Passed   30.14 sec
      Start 16: test-datafile-facade
30/50 Test #16: test-datafile-facade ................   Passed    9.36 sec
      Start 17: test-drift-instability
31/50 Test #17: test-drift-instability ..............   Passed   16.81 sec
      Start 18: test-drift-instability-staggered
32/50 Test #18: test-drift-instability-staggered ....   Passed   16.91 sec
      Start 19: test-fieldgroupComm
33/50 Test #19: test-fieldgroupComm .................   Passed    9.83 sec
      Start 22: test-griddata-yboundary-guards
34/50 Test #22: test-griddata-yboundary-guards ......   Passed   14.66 sec
      Start 23: test-gyro
35/50 Test #23: test-gyro ...........................   Passed    9.33 sec
      Start 24: test-initial
36/50 Test #24: test-initial ........................   Passed   16.33 sec
      Start 25: test-interchange-instability
37/50 Test #25: test-interchange-instability ........   Passed   20.40 sec
      Start 28: test-invertable-operator
38/50 Test #28: test-invertable-operator ............   Passed   14.02 sec
      Start 29: test-invpar
39/50 Test #29: test-invpar .........................   Passed   18.36 sec
      Start 30: test-laplace
40/50 Test #30: test-laplace ........................   Passed   26.60 sec
      Start 32: test-laplacexy-fv
41/50 Test #32: test-laplacexy-fv ...................   Passed  229.67 sec
      Start 33: test-laplacexy-short
42/50 Test #33: test-laplacexy-short ................   Passed  676.87 sec
      Start 35: test-multigrid-laplace
43/50 Test #35: test-multigrid-laplace ..............   Passed   13.77 sec
      Start 36: test-naulin-laplace
44/50 Test #36: test-naulin-laplace .................   Passed   11.17 sec
      Start 38: test-petsc-laplace
45/50 Test #38: test-petsc-laplace ..................   Passed   14.87 sec
      Start 39: test-petsc-laplace-MAST-grid
46/50 Test #39: test-petsc-laplace-MAST-grid ........   Passed   38.27 sec
      Start 40: test-restart-io
47/50 Test #40: test-restart-io .....................   Passed   12.41 sec
      Start 42: test-smooth
48/50 Test #42: test-smooth .........................   Passed   10.49 sec
      Start 45: test-squash
49/50 Test #45: test-squash .........................   Passed   20.55 sec
      Start 50: test-vec
50/50 Test #50: test-vec ............................   Passed    5.92 sec

88% tests passed, 6 tests failed out of 50

Total Test time (real) = 1370.53 sec

The following tests FAILED:
	 10 - test-bout-override-default-option (Not Run)
	 13 - test-coordinates-initialization (Failed)
	 20 - test-fci-boundary (Failed)
	 43 - test-snb (Not Run)
	 44 - test-solver (Not Run)
	 46 - test-stopCheck (Failed)
Errors while running CTest
++ exit 1
error: Bad exit status from /var/tmp/rpm-tmp.O2tdMJ (%check)
    Bad exit status from /var/tmp/rpm-tmp.O2tdMJ (%check)

RPM build errors:
Finish: rpmbuild bout++-5.2.0-11.fc45.src.rpm
Finish: build phase for bout++-5.2.0-11.fc45.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1776077438.297492/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
ERROR: Exception(/var/lib/copr-rpmbuild/results/bout++-5.2.0-11.fc45.src.rpm) Config(fedora-rawhide-x86_64) 39 minutes 47 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_failure=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
ERROR: Command failed: 
 # /usr/bin/systemd-nspawn -q -M c0ec8ab322b84dc3bff7d05b8f247be2 -D /var/lib/mock/fedora-rawhide-x86_64-1776077438.297492/root -a -u mockbuild --capability=cap_ipc_lock --capability=cap_ipc_lock --bind=/tmp/mock-resolv.s1shdi0a:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007"' '--setenv=PS1=<mock-chroot> \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/originals/bout++.spec'

Copr build error: Build failed