Warning: Permanently added '44.212.72.205' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8430551-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.2 PID: 56001 Logging PID: 56002 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8430551, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '18a0de8bf3ccb12ce8aa8ef06218e9d35dc16e82', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/seaview', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seaview', 'package_version': '5.0-10', 'project_dirname': 'gcc-15-smoketest-3', 'project_name': 'gcc-15-smoketest-3', 'project_owner': 'dmalcolm', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch', 'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch', 'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}], 'sandbox': 'dmalcolm/gcc-15-smoketest-3--dmalcolm', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'dmalcolm', 'tags': [], 'task_id': '8430551-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/seaview /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/seaview', '/var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview'... Running: git checkout 18a0de8bf3ccb12ce8aa8ef06218e9d35dc16e82 -- cmd: ['git', 'checkout', '18a0de8bf3ccb12ce8aa8ef06218e9d35dc16e82', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview rc: 0 stdout: stderr: Note: switching to '18a0de8bf3ccb12ce8aa8ef06218e9d35dc16e82'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 18a0de8 automatic import of seaview Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seaview_5.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o seaview_5.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3/seaview/seaview_5.0.tar.gz/md5/d9f1a97672efb3fd24850cf542326915/seaview_5.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 462k 100 462k 0 0 7636k 0 --:--:-- --:--:-- --:--:-- 7707k INFO: Reading stdout from command: md5sum seaview_5.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734867746.015580 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734867746.015580 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview/seaview.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734867746.015580/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-a46e8d66-4d23-4179-980d-71c5a1805b3b INFO: Checking that 72b21bcd6e1d92e4a103a75cb251c27a4cb6e767088b169f430e58afbfc15414 image matches host's architecture INFO: Copy content of container 72b21bcd6e1d92e4a103a75cb251c27a4cb6e767088b169f430e58afbfc15414 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734867746.015580/root INFO: mounting 72b21bcd6e1d92e4a103a75cb251c27a4cb6e767088b169f430e58afbfc15414 with podman image mount INFO: image 72b21bcd6e1d92e4a103a75cb251c27a4cb6e767088b169f430e58afbfc15414 as /var/lib/containers/storage/overlay/fafa28ff4385f12f4516fa483e755b1eb92586d70d99f7a5ad8577e28ec32290/merged INFO: umounting image 72b21bcd6e1d92e4a103a75cb251c27a4cb6e767088b169f430e58afbfc15414 (/var/lib/containers/storage/overlay/fafa28ff4385f12f4516fa483e755b1eb92586d70d99f7a5ad8577e28ec32290/merged) with podman image umount INFO: Removing image mock-bootstrap-a46e8d66-4d23-4179-980d-71c5a1805b3b INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734867746.015580/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 dnf5-5.2.8.1-2.fc42.aarch64 dnf5-plugins-5.2.8.1-2.fc42.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 237.6 KiB/s | 11.4 KiB | 00m00s Copr repository 100% | 90.4 KiB/s | 1.5 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 21.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 110.6 MiB/s | 8.6 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 aarch64 1.0.8-19.fc42 copr_base 168.7 KiB coreutils aarch64 9.5-11.fc42 copr_base 7.9 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.10-8.fc42 copr_base 1.7 MiB fedora-release-common noarch 42-0.11 fedora 19.8 KiB findutils aarch64 1:4.10.0-4.fc42 copr_base 1.9 MiB gawk aarch64 5.3.0-4.fc41 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-24.fc42 copr_base 0.0 B grep aarch64 3.11-9.fc42 copr_base 1.0 MiB gzip aarch64 1.13-2.fc42 copr_base 422.7 KiB info aarch64 7.1.1-2.fc42 fedora 613.6 KiB patch aarch64 2.7.6-25.fc42 copr_base 259.0 KiB redhat-rpm-config noarch 300-1.no_annobin.0.fc42 copr_base 186.6 KiB rpm-build aarch64 4.20.0-1.fc42 copr_base 516.9 KiB sed aarch64 4.9-3.fc41 fedora 1.0 MiB shadow-utils aarch64 2:4.17.0~rc1-1.fc42 fedora 4.5 MiB tar aarch64 2:1.35-4.fc41 fedora 3.1 MiB unzip aarch64 6.0-65.fc42 fedora 2.3 MiB util-linux aarch64 2.40.2-8.fc42 fedora 16.9 MiB which aarch64 2.21-42.fc41 fedora 248.2 KiB xz aarch64 1:5.6.3-2.fc42 fedora 1.5 MiB Installing dependencies: add-determinism aarch64 0.4.3-1.fc42 copr_base 2.0 MiB alternatives aarch64 1.31-1.fc42 fedora 88.7 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs aarch64 4.0.2-1.fc42 copr_base 415.2 KiB authselect aarch64 1.5.0-8.fc42 copr_base 179.9 KiB authselect-libs aarch64 1.5.0-8.fc42 copr_base 865.5 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils aarch64 2.43.50-9.fc42 copr_base 28.9 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 copr_base 735.0 B bzip2-libs aarch64 1.0.8-19.fc42 copr_base 135.1 KiB ca-certificates noarch 2024.2.69_v8.0.401-3.fc42 fedora 2.6 MiB coreutils-common aarch64 9.5-11.fc42 copr_base 11.2 MiB cracklib aarch64 2.9.11-6.fc42 copr_base 417.7 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl aarch64 8.11.1-2.fc42 copr_base 451.9 KiB cyrus-sasl-lib aarch64 2.1.28-27.fc41 fedora 3.1 MiB debugedit aarch64 5.1-2.fc42 copr_base 241.5 KiB dwz aarch64 0.15-8.fc42 copr_base 319.6 KiB ed aarch64 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils aarch64 0.192-7.fc42 copr_base 3.0 MiB elfutils-debuginfod-client aarch64 0.192-7.fc42 copr_base 141.3 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 copr_base 1.8 KiB elfutils-libelf aarch64 0.192-7.fc42 copr_base 1.2 MiB elfutils-libs aarch64 0.192-7.fc42 copr_base 734.9 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.11 fedora 0.0 B fedora-release-identity-basic noarch 42-0.11 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file aarch64 5.45-8.fc42 fedora 139.5 KiB file-libs aarch64 5.45-8.fc42 fedora 10.0 MiB filesystem aarch64 3.18-29.fc42 fedora 106.0 B filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal aarch64 15.2-4.fc42 copr_base 12.6 MiB gdbm aarch64 1:1.23-7.fc41 fedora 928.5 KiB gdbm-libs aarch64 1:1.23-7.fc41 fedora 426.0 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc aarch64 2.40.9000-24.fc42 copr_base 6.0 MiB glibc-common aarch64 2.40.9000-24.fc42 copr_base 1.3 MiB glibc-gconv-extra aarch64 2.40.9000-24.fc42 copr_base 18.3 MiB gmp aarch64 1:6.3.0-2.fc41 fedora 722.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson aarch64 2.14-1.fc42 copr_base 90.8 KiB json-c aarch64 0.18-1.fc42 copr_base 135.7 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-4.fc42 copr_base 96.8 KiB krb5-libs aarch64 1.21.3-3.fc42 copr_base 2.5 MiB libacl aarch64 2.3.2-2.fc42 copr_base 66.3 KiB libarchive aarch64 3.7.7-1.fc42 copr_base 899.2 KiB libattr aarch64 2.5.2-4.fc41 fedora 196.6 KiB libblkid aarch64 2.40.2-8.fc42 fedora 418.6 KiB libbrotli aarch64 1.1.0-5.fc42 copr_base 904.3 KiB libcap aarch64 2.71-1.fc42 copr_base 498.5 KiB libcap-ng aarch64 0.8.5-3.fc42 copr_base 158.7 KiB libcom_err aarch64 1.47.1-6.fc42 fedora 239.3 KiB libcurl aarch64 8.11.1-2.fc42 copr_base 845.2 KiB libeconf aarch64 0.7.5-1.fc42 copr_base 78.7 KiB libevent aarch64 2.1.12-14.fc42 copr_base 1.1 MiB libfdisk aarch64 2.40.2-8.fc42 fedora 482.9 KiB libffi aarch64 3.4.6-3.fc42 fedora 282.4 KiB libgcc aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 218.8 KiB libgomp aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 501.0 KiB libidn2 aarch64 2.3.7-2.fc42 copr_base 327.7 KiB libmount aarch64 2.40.2-8.fc42 fedora 483.9 KiB libnghttp2 aarch64 1.64.0-1.fc42 fedora 262.2 KiB libnsl2 aarch64 2.0.1-2.fc42 copr_base 92.3 KiB libpkgconf aarch64 2.3.0-1.fc42 copr_base 132.0 KiB libpsl aarch64 0.21.5-4.fc42 copr_base 131.2 KiB libpwquality aarch64 1.4.5-11.fc42 copr_base 604.7 KiB libselinux aarch64 3.8-0.rc3.1.fc42 fedora 195.6 KiB libsemanage aarch64 3.8-0.rc3.1.fc42 fedora 353.3 KiB libsepol aarch64 3.8-0.rc3.1.fc42 fedora 796.3 KiB libsmartcols aarch64 2.40.2-8.fc42 fedora 288.5 KiB libssh aarch64 0.11.1-1.fc42 copr_base 575.7 KiB libssh-config noarch 0.11.1-1.fc42 copr_base 277.0 B libstdc++ aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 2.7 MiB libtasn1 aarch64 4.19.0-9.fc42 copr_base 217.7 KiB libtirpc aarch64 1.3.6-1.fc42 fedora 212.9 KiB libtool-ltdl aarch64 2.5.4-1.fc42 copr_base 92.1 KiB libunistring aarch64 1.1-8.fc42 copr_base 1.7 MiB libuuid aarch64 2.40.2-8.fc42 fedora 197.5 KiB libverto aarch64 0.3.2-9.fc41 fedora 197.5 KiB libxcrypt aarch64 4.4.36-12.fc42 fedora 269.3 KiB libxml2 aarch64 2.12.8-2.fc42 copr_base 1.9 MiB libzstd aarch64 1.5.6-2.fc41 fedora 796.0 KiB lua-libs aarch64 5.4.7-1.fc42 fedora 393.1 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs aarch64 1.10.0-1.fc42 copr_base 195.5 KiB mpfr aarch64 4.2.1-5.fc42 copr_base 748.3 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 fedora 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap aarch64 2.6.8-6.fc42 copr_base 747.0 KiB openssl-libs aarch64 1:3.2.2-8.fc42 copr_base 6.3 MiB p11-kit aarch64 0.25.5-4.fc42 copr_base 2.3 MiB p11-kit-trust aarch64 0.25.5-4.fc42 copr_base 456.7 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam aarch64 1.7.0-3.fc42 copr_base 4.2 MiB pam-libs aarch64 1.7.0-3.fc42 copr_base 218.7 KiB pcre2 aarch64 10.44-1.fc42.1 copr_base 644.5 KiB pcre2-syntax noarch 10.44-1.fc42.1 copr_base 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf aarch64 2.3.0-1.fc42 copr_base 111.1 KiB pkgconf-m4 noarch 2.3.0-1.fc42 copr_base 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 copr_base 990.0 B popt aarch64 1.19-7.fc42 copr_base 142.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 copr_base 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 copr_base 456.0 B readline aarch64 8.2-11.fc42 copr_base 553.5 KiB rpm aarch64 4.20.0-1.fc42 copr_base 3.3 MiB rpm-build-libs aarch64 4.20.0-1.fc42 copr_base 196.0 KiB rpm-libs aarch64 4.20.0-1.fc42 copr_base 718.1 KiB rpm-sequoia aarch64 1.7.0-3.fc42 copr_base 2.2 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs aarch64 3.47.2-1.fc42 fedora 1.4 MiB systemd-libs aarch64 257.1-1.fc42 fedora 2.4 MiB util-linux-core aarch64 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs aarch64 0.8.2-4.fc42 fedora 212.3 KiB xz-libs aarch64 1:5.6.3-2.fc42 fedora 266.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip aarch64 3.0-42.fc42 fedora 755.7 KiB zlib-ng-compat aarch64 2.2.2-1.fc42 fedora 133.8 KiB zstd aarch64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 155 packages Total size of inbound packages is 50 MiB. Need to download 0 B. After this operation, 227 MiB extra will be used (install 227 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] unzip-0:6.0-65.fc42.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] cpio-0:2.15-2.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] which-0:2.21-42.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] bash-0:5.2.37-1.fc42.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/154] libssh-config-0:0.11.1-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/155] libunistring-0:1.1-8.fc42.aar 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [155/155] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [100/157] Installing filesystem-srpm-ma 100% | 35.9 MiB/s | 36.8 KiB | 00m00s [101/157] Installing ed-0:1.20.2-2.fc41 100% | 139.2 MiB/s | 285.1 KiB | 00m00s [102/157] Installing patch-0:2.7.6-25.f 100% | 127.2 MiB/s | 260.5 KiB | 00m00s [103/157] Installing elfutils-default-y 100% | 255.4 KiB/s | 2.0 KiB | 00m00s [104/157] Installing elfutils-libs-0:0. 100% | 179.8 MiB/s | 736.6 KiB | 00m00s [105/157] Installing cpio-0:2.15-2.fc41 100% | 174.4 MiB/s | 1.2 MiB | 00m00s [106/157] Installing diffutils-0:3.10-8 100% | 208.0 MiB/s | 1.7 MiB | 00m00s [107/157] Installing libpkgconf-0:2.3.0 100% | 130.0 MiB/s | 133.1 KiB | 00m00s [108/157] Installing pkgconf-0:2.3.0-1. 100% | 110.9 MiB/s | 113.6 KiB | 00m00s [109/157] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [110/157] Installing jansson-0:2.14-1.f 100% | 90.0 MiB/s | 92.2 KiB | 00m00s [111/157] Installing libverto-0:0.3.2-9 100% | 194.7 MiB/s | 199.3 KiB | 00m00s [112/157] Installing libgomp-0:15.0.0-0 100% | 245.3 MiB/s | 502.4 KiB | 00m00s [113/157] Installing rpm-build-libs-0:4 100% | 192.2 MiB/s | 196.8 KiB | 00m00s [114/157] Installing keyutils-libs-0:1. 100% | 95.9 MiB/s | 98.2 KiB | 00m00s [115/157] Installing krb5-libs-0:1.21.3 100% | 249.7 MiB/s | 2.5 MiB | 00m00s [116/157] Installing libtirpc-0:1.3.6-1 100% | 209.7 MiB/s | 214.7 KiB | 00m00s [117/157] Installing libnsl2-0:2.0.1-2. 100% | 91.2 MiB/s | 93.4 KiB | 00m00s [118/157] Installing pam-0:1.7.0-3.fc42 100% | 201.7 MiB/s | 4.2 MiB | 00m00s [119/157] Installing libssh-0:0.11.1-1. 100% | 188.1 MiB/s | 577.8 KiB | 00m00s [120/157] Installing json-c-0:0.18-1.fc 100% | 133.7 MiB/s | 137.0 KiB | 00m00s [121/157] Installing xxhash-libs-0:0.8. 100% | 208.7 MiB/s | 213.7 KiB | 00m00s [122/157] Installing libnghttp2-0:1.64. 100% | 257.1 MiB/s | 263.3 KiB | 00m00s [123/157] Installing libbrotli-0:1.1.0- 100% | 221.3 MiB/s | 906.6 KiB | 00m00s [124/157] Installing libtool-ltdl-0:2.5 100% | 91.0 MiB/s | 93.2 KiB | 00m00s [125/157] Installing openldap-0:2.6.8-6 100% | 244.4 MiB/s | 750.8 KiB | 00m00s [126/157] Installing libcurl-0:8.11.1-2 100% | 275.5 MiB/s | 846.3 KiB | 00m00s [127/157] Installing elfutils-debuginfo 100% | 70.1 MiB/s | 143.6 KiB | 00m00s [128/157] Installing binutils-0:2.43.50 100% | 328.3 MiB/s | 28.9 MiB | 00m00s [129/157] Installing elfutils-0:0.192-7 100% | 275.8 MiB/s | 3.0 MiB | 00m00s [130/157] Installing gdb-minimal-0:15.2 100% | 315.1 MiB/s | 12.6 MiB | 00m00s [131/157] Installing debugedit-0:5.1-2. 100% | 119.2 MiB/s | 244.2 KiB | 00m00s [132/157] Installing curl-0:8.11.1-2.fc 100% | 34.1 MiB/s | 454.4 KiB | 00m00s [133/157] Installing rpm-0:4.20.0-1.fc4 100% | 118.5 MiB/s | 2.7 MiB | 00m00s [134/157] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [135/157] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [136/157] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [137/157] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [138/157] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [139/157] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [140/157] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [141/157] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [142/157] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [143/157] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [144/157] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [145/157] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [146/157] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [147/157] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [148/157] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [149/157] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [150/157] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [151/157] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [152/157] Installing rpm-build-0:4.20.0 100% | 128.3 MiB/s | 525.4 KiB | 00m00s [153/157] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [154/157] Installing util-linux-0:2.40. 100% | 332.4 MiB/s | 17.0 MiB | 00m00s [155/157] Installing authselect-0:1.5.0 100% | 60.0 MiB/s | 184.3 KiB | 00m00s [156/157] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s [157/157] Installing info-0:7.1.1-2.fc4 100% | 286.1 KiB/s | 614.0 KiB | 00m02s Warning: skipped OpenPGP checks for 78 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.aarch64 alternatives-1.31-1.fc42.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.aarch64 authselect-1.5.0-8.fc42.aarch64 authselect-libs-1.5.0-8.fc42.aarch64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.aarch64 binutils-2.43.50-9.fc42.aarch64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc42.aarch64 bzip2-libs-1.0.8-19.fc42.aarch64 ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch coreutils-9.5-11.fc42.aarch64 coreutils-common-9.5-11.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc42.aarch64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.1-2.fc42.aarch64 diffutils-3.10-8.fc42.aarch64 dwz-0.15-8.fc42.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.aarch64 elfutils-debuginfod-client-0.192-7.fc42.aarch64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.aarch64 elfutils-libs-0.192-7.fc42.aarch64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.aarch64 file-libs-5.45-8.fc42.aarch64 filesystem-3.18-29.fc42.aarch64 filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc42.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.2-4.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-24.fc42.aarch64 glibc-common-2.40.9000-24.fc42.aarch64 glibc-gconv-extra-2.40.9000-24.fc42.aarch64 glibc-minimal-langpack-2.40.9000-24.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc42.aarch64 gzip-1.13-2.fc42.aarch64 info-7.1.1-2.fc42.aarch64 jansson-2.14-1.fc42.aarch64 json-c-0.18-1.fc42.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc42.aarch64 krb5-libs-1.21.3-3.fc42.aarch64 libacl-2.3.2-2.fc42.aarch64 libarchive-3.7.7-1.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc42.aarch64 libcap-2.71-1.fc42.aarch64 libcap-ng-0.8.5-3.fc42.aarch64 libcom_err-1.47.1-6.fc42.aarch64 libcurl-8.11.1-2.fc42.aarch64 libeconf-0.7.5-1.fc42.aarch64 libevent-2.1.12-14.fc42.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-15.0.0-0.2.fc42.aarch64 libgomp-15.0.0-0.2.fc42.aarch64 libidn2-2.3.7-2.fc42.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.64.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc42.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc42.aarch64 libpwquality-1.4.5-11.fc42.aarch64 libselinux-3.8-0.rc3.1.fc42.aarch64 libsemanage-3.8-0.rc3.1.fc42.aarch64 libsepol-3.8-0.rc3.1.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-15.0.0-0.2.fc42.aarch64 libtasn1-4.19.0-9.fc42.aarch64 libtirpc-1.3.6-1.fc42.aarch64 libtool-ltdl-2.5.4-1.fc42.aarch64 libunistring-1.1-8.fc42.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-12.fc42.aarch64 libxml2-2.12.8-2.fc42.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.7-1.fc42.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc42.aarch64 mpfr-4.2.1-5.fc42.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.aarch64 openssl-libs-3.2.2-8.fc42.aarch64 p11-kit-0.25.5-4.fc42.aarch64 p11-kit-trust-0.25.5-4.fc42.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.aarch64 pam-libs-1.7.0-3.fc42.aarch64 patch-2.7.6-25.fc42.aarch64 pcre2-10.44-1.fc42.1.aarch64 pcre2-syntax-10.44-1.fc42.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc42.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-300-1.no_annobin.0.fc42.noarch rpm-4.20.0-1.fc42.aarch64 rpm-build-4.20.0-1.fc42.aarch64 rpm-build-libs-4.20.0-1.fc42.aarch64 rpm-libs-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-1.fc42.aarch64 sqlite-libs-3.47.2-1.fc42.aarch64 systemd-libs-257.1-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-65.fc42.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-4.fc42.aarch64 xz-5.6.3-2.fc42.aarch64 xz-libs-5.6.3-2.fc42.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721433600 Wrote: /builddir/build/SRPMS/seaview-5.0-10.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1734867746.015580/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_g4f18ar/seaview/seaview.spec) Config(child) 0 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/seaview-5.0-10.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734867746.015580/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734867746.015580/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734867746.015580/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 dnf5-5.2.8.1-2.fc42.aarch64 dnf5-plugins-5.2.8.1-2.fc42.aarch64 Finish: chroot init Start: build phase for seaview-5.0-10.fc42.src.rpm Start: build setup for seaview-5.0-10.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721433600 Wrote: /builddir/build/SRPMS/seaview-5.0-10.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 102.5 KiB/s | 1.5 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 21.2 KiB/s | 1.5 KiB | 00m00s fedora 100% | 116.4 KiB/s | 11.4 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0.27-2.fc42 copr_base 313.2 KiB fltk-devel aarch64 1.3.8-10.fc42 copr_base 42.2 MiB gcc-c++ aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 38.5 MiB libXinerama-devel aarch64 1.1.5-7.fc41 fedora 7.0 KiB make aarch64 1:4.4.1-9.fc42 copr_base 1.8 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.79-1.fc42 copr_base 98.6 KiB annobin-plugin-gcc aarch64 12.79-1.fc42 copr_base 997.2 KiB brotli aarch64 1.1.0-5.fc42 copr_base 66.4 KiB brotli-devel aarch64 1.1.0-5.fc42 copr_base 65.6 KiB bzip2-devel aarch64 1.0.8-19.fc42 copr_base 309.8 KiB cairo aarch64 1.18.2-2.fc42 copr_base 1.8 MiB cairo-devel aarch64 1.18.2-2.fc42 copr_base 2.3 MiB cmake-filesystem aarch64 3.31.2-1.fc42 copr_base 0.0 B cpp aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 35.3 MiB default-fonts-core-sans noarch 4.2-2.fc42 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat aarch64 2.6.4-1.fc42 copr_base 343.6 KiB fltk aarch64 1.3.8-10.fc42 copr_base 1.5 MiB fontconfig aarch64 2.15.0-8.fc41 fedora 2.4 MiB fontconfig-devel aarch64 2.15.0-8.fc41 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype aarch64 2.13.3-1.fc42 copr_base 799.7 KiB freetype-devel aarch64 2.13.3-1.fc42 copr_base 8.5 MiB gcc aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 97.8 MiB gcc-plugin-annobin aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 67.5 KiB gettext aarch64 0.23-1.fc42 copr_base 5.9 MiB gettext-envsubst aarch64 0.23-1.fc42 copr_base 105.3 KiB gettext-libs aarch64 0.23-1.fc42 copr_base 2.0 MiB gettext-runtime aarch64 0.23-1.fc42 copr_base 537.3 KiB glib2 aarch64 2.83.0-3.fc42 copr_base 15.3 MiB glib2-devel aarch64 2.83.0-3.fc42 copr_base 16.0 MiB glibc-devel aarch64 2.40.9000-24.fc42 copr_base 2.2 MiB gnutls aarch64 3.8.8-1.fc42 copr_base 3.3 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 aarch64 1.3.14-16.fc41 fedora 495.9 KiB graphite2-devel aarch64 1.3.14-16.fc41 fedora 49.1 KiB harfbuzz aarch64 10.1.0-2.fc42 copr_base 2.5 MiB harfbuzz-cairo aarch64 10.1.0-2.fc42 copr_base 66.2 KiB harfbuzz-devel aarch64 10.1.0-2.fc42 copr_base 5.2 MiB harfbuzz-icu aarch64 10.1.0-2.fc42 copr_base 66.2 KiB hwdata noarch 0.390-1.fc42 fedora 9.3 MiB kernel-headers aarch64 6.13.0-0.rc3.29.fc42 fedora 6.4 MiB libICE aarch64 1.1.2-1.fc42 fedora 220.0 KiB libICE-devel aarch64 1.1.2-1.fc42 fedora 261.8 KiB libSM aarch64 1.2.5-1.fc42 fedora 127.5 KiB libSM-devel aarch64 1.2.5-1.fc42 fedora 18.8 KiB libX11 aarch64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libX11-devel aarch64 1.8.10-2.fc42 fedora 1.0 MiB libX11-xcb aarch64 1.8.10-2.fc42 fedora 195.1 KiB libXau aarch64 1.0.12-1.fc42 fedora 119.8 KiB libXau-devel aarch64 1.0.12-1.fc42 fedora 7.5 KiB libXcursor aarch64 1.2.3-1.fc42 fedora 69.8 KiB libXext aarch64 1.3.6-2.fc41 fedora 210.0 KiB libXext-devel aarch64 1.3.6-2.fc41 fedora 98.9 KiB libXfixes aarch64 6.0.1-4.fc41 fedora 198.4 KiB libXft aarch64 2.3.8-7.fc41 fedora 256.5 KiB libXft-devel aarch64 2.3.8-7.fc41 fedora 31.7 KiB libXinerama aarch64 1.1.5-7.fc41 fedora 199.1 KiB libXrender aarch64 0.9.12-1.fc42 fedora 68.7 KiB libXrender-devel aarch64 0.9.12-1.fc42 fedora 50.1 KiB libXt aarch64 1.3.1-1.fc42 fedora 480.5 KiB libXt-devel aarch64 1.3.1-1.fc42 fedora 1.6 MiB libXxf86vm aarch64 1.1.6-1.fc42 fedora 68.2 KiB libasan aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 1.5 MiB libatomic aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 66.1 KiB libb2 aarch64 0.98.1-12.fc42 copr_base 72.8 KiB libblkid-devel aarch64 2.40.2-8.fc42 fedora 44.9 KiB libdrm aarch64 2.4.124-1.fc42 copr_base 744.4 KiB libedit aarch64 3.1-53.20240808cvs.fc42 copr_base 275.2 KiB libffi-devel aarch64 3.4.6-3.fc42 fedora 29.9 KiB libglvnd aarch64 1:1.7.0-5.fc42 copr_base 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-5.fc42 copr_base 40.3 KiB libglvnd-devel aarch64 1:1.7.0-5.fc42 copr_base 2.1 MiB libglvnd-egl aarch64 1:1.7.0-5.fc42 copr_base 66.3 KiB libglvnd-gles aarch64 1:1.7.0-5.fc42 copr_base 388.7 KiB libglvnd-glx aarch64 1:1.7.0-5.fc42 copr_base 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-5.fc42 copr_base 322.3 KiB libicu aarch64 76.1-1.fc42 copr_base 36.5 MiB libicu-devel aarch64 76.1-1.fc42 copr_base 5.1 MiB libjpeg-turbo aarch64 3.0.4-1.fc42 copr_base 724.7 KiB libjpeg-turbo-devel aarch64 3.0.4-1.fc42 copr_base 353.3 KiB libmount-devel aarch64 2.40.2-8.fc42 fedora 63.5 KiB libmpc aarch64 1.3.1-6.fc42 copr_base 149.9 KiB libpciaccess aarch64 0.16-13.fc41 fedora 200.7 KiB libpng aarch64 2:1.6.44-1.fc42 copr_base 264.5 KiB libpng-devel aarch64 2:1.6.44-1.fc42 copr_base 947.0 KiB libselinux-devel aarch64 3.8-0.rc3.1.fc42 fedora 126.8 KiB libsepol-devel aarch64 3.8-0.rc3.1.fc42 fedora 120.8 KiB libstdc++-devel aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 15.4 MiB libtextstyle aarch64 0.23-1.fc42 copr_base 194.6 KiB libubsan aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 460.6 KiB libuuid-devel aarch64 2.40.2-8.fc42 fedora 40.9 KiB libwayland-client aarch64 1.23.0-2.fc41 fedora 198.2 KiB libwayland-server aarch64 1.23.0-2.fc41 fedora 198.7 KiB libxcb aarch64 1.17.0-3.fc42 fedora 5.0 MiB libxcb-devel aarch64 1.17.0-3.fc42 fedora 2.7 MiB libxcrypt-devel aarch64 4.4.36-12.fc42 fedora 30.5 KiB libxml2-devel aarch64 2.12.8-2.fc42 copr_base 3.4 MiB libxshmfence aarch64 1.3.2-5.fc42 fedora 68.8 KiB llvm-libs aarch64 19.1.5-1.fc42 copr_base 113.4 MiB lm_sensors-libs aarch64 3.6.0-20.fc42 copr_base 92.2 KiB mesa-dri-drivers aarch64 24.3.1-1.fc42 copr_base 103.5 MiB mesa-filesystem aarch64 24.3.1-1.fc42 copr_base 3.6 KiB mesa-libEGL aarch64 24.3.1-1.fc42 copr_base 387.7 KiB mesa-libGL aarch64 24.3.1-1.fc42 copr_base 579.0 KiB mesa-libGLU aarch64 9.0.3-5.fc42 copr_base 322.4 KiB mesa-libGLU-devel aarch64 9.0.3-5.fc42 copr_base 17.0 KiB mesa-libgbm aarch64 24.3.1-1.fc42 copr_base 132.7 KiB mesa-libglapi aarch64 24.3.1-1.fc42 copr_base 322.3 KiB mpdecimal aarch64 2.5.1-16.fc42 copr_base 259.9 KiB nettle aarch64 3.10-3.fc42 copr_base 817.4 KiB pcre2-devel aarch64 10.44-1.fc42.1 copr_base 2.0 MiB pcre2-utf16 aarch64 10.44-1.fc42.1 copr_base 578.3 KiB pcre2-utf32 aarch64 10.44-1.fc42.1 copr_base 514.3 KiB pixman aarch64 0.44.2-1.fc42 copr_base 644.4 KiB pixman-devel aarch64 0.44.2-1.fc42 copr_base 49.4 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python3 aarch64 3.13.1-2.fc42 copr_base 82.5 KiB python3-libs aarch64 3.13.1-2.fc42 copr_base 41.7 MiB python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB spirv-tools-libs aarch64 2024.3-4.fc42 fedora 5.3 MiB sysprof-capture-devel aarch64 47.2-1.fc42 fedora 277.7 KiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel aarch64 1:5.6.3-2.fc42 fedora 255.6 KiB zlib-ng-compat-devel aarch64 2.2.2-1.fc42 fedora 106.8 KiB Transaction Summary: Installing: 130 packages Total size of inbound packages is 166 MiB. Need to download 4 MiB. After this operation, 670 MiB extra will be used (install 670 MiB, remove 0 B). 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8.5 KiB | 00m00s Warning: skipped OpenPGP checks for 73 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: build setup for seaview-5.0-10.fc42.src.rpm Start: rpmbuild seaview-5.0-10.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721433600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.tLTiky + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + test -d /builddir/build/BUILD/seaview-5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.0-build + /usr/bin/rm -rf /builddir/build/BUILD/seaview-5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.sjuQlZ + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + cd /builddir/build/BUILD/seaview-5.0-build + rm -rf seaview + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seaview_5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seaview + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0 patching file csrc/dnapars.c patching file csrc/phylip.c patching file csrc/phylip.h patching file csrc/protpars.c patching file Makefile + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.N2qwbl + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + make -j4 g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx regions.cxx: In function ‘void save_active_region(SEA_VIEW*)’: regions.cxx:502:10: warning: variable ‘taille’ set but not used [-Wunused-but-set-variable] 502 | int tmp, taille; | ^~~~~~ use_mase_files.cxx: In function ‘int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:215:9: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ regions.cxx: In function ‘int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:313:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ use_mase_files.cxx: In function ‘int read_clustal_align(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:623:17: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 623 | while(*p==' ') p--; *(p+1)=0; | ^ seaview.cxx: In function ‘int delete_selected_seqs(SEA_VIEW*)’: seaview.cxx:1770:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1770 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1773:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1773 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function ‘void colors_callback(Fl_Widget*, void*)’: seaview.cxx:1924:15: warning: variable ‘item’ set but not used [-Wunused-but-set-variable] 1924 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function ‘void delete_tmp_filename(const char*)’: seaview.cxx:653:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 653 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function ‘char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)’: seaview.cxx:2916:45: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2916 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ regions.cxx:291:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); | ^~ ~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from regions.cxx:1: In function ‘sprintf’, inlined from ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’ at regions.cxx:291:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 16 or more bytes (assuming 4111) into a destination of size 500 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ regions.cxx: In function ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:343:42: warning: ‘last’ may be used uninitialized [-Wmaybe-uninitialized] 343 | memmove(cmd, last, l + 1 - (last - cmd)); | ~~~~~^~~~~ regions.cxx:246:56: note: ‘last’ was declared here 246 | char base_fname[PATH_MAX], fname[PATH_MAX], *p, *q, *last; | ^~~~ regions.cxx: In function ‘site_mask_creation_dialog(_SEA_VIEW*, position_mask*)’: regions.cxx:745:10: warning: ‘retval’ may be used uninitialized [-Wmaybe-uninitialized] 745 | return retval; | ^~~~~~ regions.cxx:687:15: note: ‘retval’ was declared here 687 | const char *retval; | ^~~~~~ seaview.cxx: In function ‘help_callback(Fl_Widget*, void*)’: seaview.cxx:3633:53: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3633 | "Help file %s\nnot found in PATH directories nor in current directory", help_file | ^~ seaview.cxx: In function ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’: seaview.cxx:1141:23: warning: ‘%7d’ directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] 1141 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~ seaview.cxx:1141:22: note: directive argument in the range [-2147483648, 2147483646] 1141 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from seaview.cxx:67: In function ‘sprintf’, inlined from ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’ at seaview.cxx:1141:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx use_mase_files.cxx: In function ‘read_mase_seqs_header(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:167:32: warning: ‘lpre’ may be used uninitialized [-Wmaybe-uninitialized] 167 | if(lpre+lseq > curr_max_header) { | ~~~~^~~~~ use_mase_files.cxx:137:18: note: ‘lpre’ was declared here 137 | int l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx use_mase_files.cxx: In function ‘read_phylip_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:521:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized] 521 | l = q - seq[totseqs - 1]; | ~~^~~~~~~~~~~~~~~~~~ use_mase_files.cxx:466:11: note: ‘q’ was declared here 466 | char *p, *q; | ^ use_mase_files.cxx: In function ‘read_clustal_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:617:61: warning: ‘wid_name’ may be used uninitialized [-Wmaybe-uninitialized] 617 | seqname[curr_spec] = (char *)malloc(wid_name+1); | ~~~~~~~~^~ use_mase_files.cxx:564:16: note: ‘wid_name’ was declared here 564 | carac, wid_name; | ^~~~~~~~ use_mase_files.cxx:637:17: warning: ‘curr_max_len’ may be used uninitialized [-Wmaybe-uninitialized] 637 | if(curr_len + l > curr_max_len) { | ^~ use_mase_files.cxx:563:64: note: ‘curr_max_len’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^~~~~~~~~~~~ use_mase_files.cxx:650:15: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized] 650 | memcpy(seq[curr_spec]+curr_len, line + wid_name, l); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:563:8: note: ‘l’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^ align.cxx: In function ‘void replace_stars(char*)’: align.cxx:1302:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:944:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from align.cxx:1: In function ‘sprintf’, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:944:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22: align.cxx:991:18: note: directive argument in the range [1, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 24 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:973:17: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 973 | sprintf(tmp, "%d", reponse); | ^~ align.cxx:973:16: note: directive argument in the range [0, 2147483646] 973 | sprintf(tmp, "%d", reponse); | ^~~~ In function ‘sprintf’, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:973:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 5 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1831:35: warning: ‘lines_per_page’ may be used uninitialized [-Wmaybe-uninitialized] 1831 | if( use_pdf && (!firstpage) && (curr_lines + view->tot_seqs + nl > lines_per_page)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:32: note: ‘lines_per_page’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~~~~~ use_mase_files.cxx:1767:14: warning: ‘top_margin’ may be used uninitialized [-Wmaybe-uninitialized] 1767 | fl_draw(oneline, margin, top_margin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:66: note: ‘top_margin’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~ In function ‘color_pdf_display(_SEA_VIEW*, int (*)(int), char*, int, double, double, int, double, double, int, int)’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1916:34: use_mase_files.cxx:1980:33: warning: ‘descender’ may be used uninitialized [-Wmaybe-uninitialized] 1980 | fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize); | ~~~~~~~~~~~~~^~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1689:42: note: ‘descender’ was declared here 1689 | double char_width = fontsize/2, descender, margin = 25; | ^~~~~~~~~ use_mase_files.cxx:1766:51: warning: ‘surface’ may be used uninitialized [-Wmaybe-uninitialized] 1766 | ((Fl_PDF_or_PS_File_Device*)surface)->origin(0, fontsize); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ use_mase_files.cxx:1679:22: note: ‘surface’ was declared here 1679 | Fl_Surface_Device *surface; | ^~~~~~~ In file included from /usr/include/string.h:548, from seaview.h:5, from use_mase_files.cxx:1: In function ‘memset’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1820:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘vary_pos’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1686:8: note: ‘vary_pos’ was declared here 1686 | int *vary_pos; /* rang ds alignement de la colonne imprimŽe */ | ^~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:825:31: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:825:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:835:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 835 | sprintf(msa_name, "msa_name_%d", num + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:835:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:837:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 837 | sprintf(msa_name, "msa_name_%d", num); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:837:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:840:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 840 | sprintf(msa_name, "msa_args_%d", num + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:840:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:842:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 842 | sprintf(msa_name, "msa_args_%d", num); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:842:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24: align.cxx:991:18: note: directive argument in the range [-2147483646, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:861:23: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:861:23: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx seaview.cxx: In function ‘goto_callback(Fl_Widget*, void*)’: seaview.cxx:2745:16: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2745 | strncpy(target, p, l); target[l] = 0; majuscules(target); | ^ seaview.cxx:2743:19: note: length computed here 2743 | l = strlen(p); | ~~~~~~^~~ align.cxx: In function ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘cre_align_menu(_SEA_VIEW*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_algo_opts(int, char**)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_opt_resname(int)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:548, from seaview.h:5: In function ‘memset’, inlined from ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’ at seaview.cxx:3691:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘gapcolor’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’: seaview.cxx:3671:8: note: ‘gapcolor’ was declared here 3671 | int l, gapcolor, *plength; | ^~~~~~~~ align.cxx: In function ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’: align.cxx:1345:42: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 1345 | sprintf(seqname[num], "S_%d", num); | ^~ align.cxx:1345:39: note: directive argument in the range [0, 2147483646] 1345 | sprintf(seqname[num], "S_%d", num); | ^~~~~~ In function ‘sprintf’, inlined from ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’ at align.cxx:1345:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘del_gap_only_sites(_SEA_VIEW*)’: seaview.cxx:1707:23: warning: ‘debut’ may be used uninitialized [-Wmaybe-uninitialized] 1707 | count = position - debut; | ~~~~~~^~~~~~~~~~~~~~~~~~ seaview.cxx:1686:39: note: ‘debut’ was declared here 1686 | int position, numseq, allgaps, inrun, debut, count; | ^~~~~ use_mase_files.cxx: In function ‘format_conversion(int, char**)’: use_mase_files.cxx:2369:3: warning: ‘err_message’ may be used uninitialized [-Wmaybe-uninitialized] 2369 | if (err_message) { | ^~ use_mase_files.cxx:2171:9: note: ‘err_message’ was declared here 2171 | char *err_message, *p; | ^~~~~~~~~~~ use_mase_files.cxx:2270:27: warning: ‘current_seg’ may be used uninitialized [-Wmaybe-uninitialized] 2270 | current_seg->next = seg; | ~~~~~~~~~~~~~~~~~~^~~~~ use_mase_files.cxx:2235:20: note: ‘current_seg’ was declared here 2235 | list_segments *current_seg; | ^~~~~~~~~~~ align.cxx: In function ‘unalign(_SEA_VIEW*)’: align.cxx:1415:91: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1415 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1387:15: note: ‘calc_color_function’ was declared here 1387 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ align.cxx: In function ‘replace_align_part(_SEA_VIEW*, int, int, char*, int, int, int*, align_choice, char const**)’: align.cxx:455:83: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 455 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:300:7: note: ‘calc_color_function’ was declared here 300 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘delete_selected_seqs(_SEA_VIEW*)’: seaview.cxx:1741:48: warning: ‘temp_data’ may be used uninitialized [-Wmaybe-uninitialized] 1741 | if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) view->sequence[i]; | ^ seaview.cxx:1729:8: note: ‘temp_data’ was declared here 1729 | void **temp_data; | ^~~~~~~~~ seaview.cxx:1766:47: warning: ‘temp_int’ may be used uninitialized [-Wmaybe-uninitialized] 1766 | if( ! view->sel_seqs[i] ) temp_int[j++]= view->each_length[i]; | ^ seaview.cxx:1731:26: note: ‘temp_int’ was declared here 1731 | int new_tot_seqs, i, j, *temp_int, numset; | ^~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx xfmatpt.cxx: In function ‘change_comput_params(Fl_Widget*, void*)’: xfmatpt.cxx:750:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 750 | sprintf(tmp,"%d", fdui->identites); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from matpt.h:3, from xfmatpt.cxx:1: In function ‘sprintf’, inlined from ‘change_comput_params(Fl_Widget*, void*)’ at xfmatpt.cxx:750:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘edit_menu_callback(Fl_Widget*, void*)’: seaview.cxx:2580:17: warning: ‘new_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2580 | new_pos += 2; | ~~~~~~~~^~~~ seaview.cxx:2564:30: note: ‘new_pos’ was declared here 2564 | int old_total, *tmp, new_pos, i, old_first_seq; | ^~~~~~~ align.cxx: In function ‘profile_align(_SEA_VIEW*)’: align.cxx:1281:90: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1281 | view->col_rank[table[num]][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1108:15: note: ‘calc_color_function’ was declared here 1108 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ align.cxx: In function ‘command_line_align(int, char**)’: align.cxx:1507:37: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~ align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘command_line_align(int, char**)’ at align.cxx:1507:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx xfmatpt.cxx: In function ‘really_close(FD_matpt*)’: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘handle_keyboard(_SEA_VIEW*, unsigned int, int)’: seaview.cxx:4630:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4630 | if(count_each == multipl && | ^~ seaview.cxx:4594:20: note: ‘count_each’ was declared here 4594 | int count, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4757:17: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4757 | if(count_each == multipl && | ^~ seaview.cxx:4692:39: note: ‘count_each’ was declared here 4692 | int newlength = 0, count = 0, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4681:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4681 | if(count_each == multipl && view->regions != NULL) | ^~ seaview.cxx:4658:13: note: ‘count_each’ was declared here 4658 | int count_each; | ^~~~~~~~~~ seaview.cxx:4640:17: warning: ‘count’ may be used uninitialized [-Wmaybe-uninitialized] 4640 | new_pos = view->cursor_site - count; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx:4594:13: note: ‘count’ was declared here 4594 | int count, count_each, debut, fin, test; | ^~~~~ xfmatpt.cxx: In function ‘show_dot_plot(char*, char*, char*, char*, int, int, int, void*)’: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx nexus.cxx: In function ‘next_token(_IO_FILE*)’: nexus.cxx:155:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 155 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:153:44: note: call to ‘realloc’ here 153 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx:173:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 173 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:171:44: note: call to ‘realloc’ here 171 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx nexus.cxx: In function ‘process_taxa_taxlabels(_IO_FILE*, int)’: nexus.cxx:357:1: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 357 | if(p != NULL && *p != ';') skip_command(in); | ^~ nexus.cxx:343:7: note: ‘p’ was declared here 343 | char *p, **names; | ^ nexus.cxx: In function ‘build_list_pairs(_IO_FILE*, int)’: nexus.cxx:441:27: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized] 441 | next->fin = debut; | ~~~~~~~~~~^~~~~~~ nexus.cxx:424:30: note: ‘next’ was declared here 424 | list_segments *list = NULL, *next, *elt; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx nexus.cxx: In function ‘process_block_characters(_IO_FILE*, int*, char***, int*, int*)’: nexus.cxx:685:52: warning: ‘gap’ may be used uninitialized [-Wmaybe-uninitialized] 685 | seqs = process_chars_matrix(in, *nsites, gap, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 686 | *pntaxa, *taxnames, FALSE, matchchar, missing, *protein); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nexus.cxx:667:19: note: ‘gap’ was declared here 667 | int interleave=0, gap, matchchar = 0, missing = 0; | ^~~ concatenate.cxx: In function ‘concatenate(_SEA_VIEW*, _SEA_VIEW*, bool, bool, bool)’: concatenate.cxx:124:32: warning: ‘found’ may be used uninitialized [-Wmaybe-uninitialized] 124 | if (want_addgaps) found[j] = TRUE; | ^ concatenate.cxx:100:17: note: ‘found’ was declared here 100 | int i, j, l, *found, target_length = target->seq_length; | ^~~~~ concatenate.cxx:114:25: warning: ‘gaps’ may be used uninitialized [-Wmaybe-uninitialized] 114 | add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concatenate.cxx:101:9: note: ‘gaps’ was declared here 101 | char *gaps; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx trees.cxx: In function ‘matrix* Obs_Dist(allseq*, model*)’: trees.cxx:1577:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1577 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘matrix* K80_dist_nogamma(allseq*)’: trees.cxx:1719:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1719 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘void run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1297:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1297 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘void command_line_phylogeny(int, char**)’: trees.cxx:2790:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2790 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ trees.cxx: In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’: trees.cxx:2401:25: warning: pointer ‘bootstrap_trees_72’ used after ‘realloc’ [-Wuse-after-free] 2401 | q = tmpc + (q - bootstrap_trees); | ~~^~~~~~~~~~~~~~~~~ trees.cxx:2400:38: note: call to ‘realloc’ here 2400 | char *tmpc = (char*)realloc(bootstrap_trees, lbtrees + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1278:30: warning: pointer ‘b_tree_338’ used after ‘realloc’ [-Wuse-after-free] 1278 | q = tree2 + (q - b_tree); | ~~^~~~~~~~ trees.cxx:1277:38: note: call to ‘realloc’ here 1277 | tree2 = (char *)realloc(b_tree, l + 1); | ~~~~~~~^~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:366:43: warning: ‘compgroup’ may be used uninitialized [-Wmaybe-uninitialized] 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~ statistics.cxx:596:14: warning: ‘compgroupall’ may be used uninitialized [-Wmaybe-uninitialized] 596 | sprintf(p, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ statistics.cxx:366:55: note: ‘compgroupall’ was declared here 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from statistics.cxx:1: In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvmin’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:77: note: ‘titvmin’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:651:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvmax’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:86: note: ‘titvmax’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvminname1’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:369:9: note: ‘titvminname1’ was declared here 369 | char *titvminname1, *titvminname2; | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvminname2’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:369:24: note: ‘titvminname2’ was declared here 369 | char *titvminname1, *titvminname2; | ^~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx least_squares_brl.cxx: In function ‘tree_btos(int**, int, double*, double*, double*, char**, noeud2**)’: least_squares_brl.cxx:373:41: warning: ‘tax1’ may be used uninitialized [-Wmaybe-uninitialized] 373 | p1 = bottomnode(arbre_s[tax1]); | ^~~~ least_squares_brl.cxx:310:48: note: ‘tax1’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:374:41: warning: ‘tax2’ may be used uninitialized [-Wmaybe-uninitialized] 374 | p2 = bottomnode(arbre_s[tax2]); | ^~~~ least_squares_brl.cxx:310:54: note: ‘tax2’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:349:17: warning: ‘sommebi’ may be used uninitialized [-Wmaybe-uninitialized] 349 | if (sommebi == 2) { | ^~ least_squares_brl.cxx:310:39: note: ‘sommebi’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~~~~ addbootstrap.cxx: In function ‘compute_consensus_tree(char**, int**, int)’: addbootstrap.cxx:895:7: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized] 895 | if (k < height) { // columns were not all identical, try columns on 0-side of branch i | ^~ addbootstrap.cxx:853:13: note: ‘k’ was declared here 853 | int i, j, k, l, w, word, restbranches, j1; | ^ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2375:54: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2375 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: trees.cxx:2375:32: note: directive argument in the range [1, 2147483647] 2375 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from trees.cxx:6: In function ‘sprintf’, inlined from ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’ at trees.cxx:2375:12, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 23 and 32 bytes into a destination of size 30 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2069:57: warning: ‘ best trees, ’ directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=] 2069 | if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2069:34: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 28 and 37 bytes into a destination of size 35 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: trees.cxx:2420:41: warning: ‘all_best’ may be used uninitialized [-Wmaybe-uninitialized] 2420 | if (count > 1) tree = add_equally_best(tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2353:40: note: ‘all_best’ was declared here 2353 | char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL; | ^~~~~~~~ pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’: pseudoterminal.cxx:342:32: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | freopen(dialogfname, "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:344:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Return_Button.H:24, from seaview.h:18: In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2259:26: /usr/include/FL/Fl_Button.H:102:30: warning: ‘thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2165:20: note: ‘thorough_b’ was declared here 2165 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~ In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2260:36: /usr/include/FL/Fl_Button.H:102:30: warning: ‘less_thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2165:33: note: ‘less_thorough_b’ was declared here 2165 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Input.H:25, from seaview.h:16: In member function ‘Fl_Input_::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2262:22: /usr/include/FL/Fl_Input_.H:244:37: warning: ‘w_best’ may be used uninitialized [-Wmaybe-uninitialized] 244 | const char* value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2166:17: note: ‘w_best’ was declared here 2166 | Fl_Int_Input *w_best; | ^~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx unrooted.cxx: In function ‘hit try_angle_draw(float, int*, int*, float*, int, int, int, int)’: unrooted.cxx:634:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 634 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:634:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 634 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:635:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 635 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:635:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 635 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:636:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 636 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 636 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:637:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 637 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 637 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ trees.cxx: In function ‘run_distance_method(_SEA_VIEW*, int, int, int, int, int, Fl_Box*, char const*, int, char const*, char const*, int, void (*)(char const*, ...), int, int)’: trees.cxx:520:24: warning: ‘display_tree’ may be used uninitialized [-Wmaybe-uninitialized] 520 | return display_tree; | ^~~~~~~~~~~~ trees.cxx:461:15: note: ‘display_tree’ was declared here 461 | char *display_tree, *bootstrap_trees = NULL, *err_mess, tree_label[100]=""; | ^~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1177:56: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] 1177 | sprintf(args + strlen(args), " -u \"%s\"", tmp); | ^~ ~~~ In function ‘sprintf’, inlined from ‘run_phyml_callback(Fl_Widget*, void*)’ at trees.cxx:1177:13: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 4102 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ unrooted.cxx: In function ‘set_angles_noeuds(_bignoeud*, _bignoeud*, double, double*, double)’: unrooted.cxx:1121:48: warning: ‘poids1’ may be used uninitialized [-Wmaybe-uninitialized] 1121 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1080:20: note: ‘poids1’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1121:64: warning: ‘poids2’ may be used uninitialized [-Wmaybe-uninitialized] 1121 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1080:28: note: ‘poids2’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1128:16: warning: ‘poids’ may be used uninitialized [-Wmaybe-uninitialized] 1128 | return poids; | ^~~~~ unrooted.cxx:1080:13: note: ‘poids’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~ treedraw.cxx: In function ‘count_node(noeud*, noeud*)’: treedraw.cxx:3305:15: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3305:52: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3305:89: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx trees.cxx: In function ‘command_line_phylogeny(int, char**)’: trees.cxx:2838:3: warning: ‘tree’ may be used uninitialized [-Wmaybe-uninitialized] 2838 | if (tree) { | ^~ trees.cxx:2741:9: note: ‘tree’ was declared here 2741 | char *tree, *p; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx tbe.cxx: In function ‘TBE_Compute(char*, char*)’: tbe.cxx:85:16: warning: pointer ‘ref_branches_65’ used after ‘free’ [-Wuse-after-free] 85 | TBE_PrintTree(newtree,fd_reftree,ref_branches, nboot); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbe.cxx:83:7: note: call to ‘free’ here 83 | free(ref_branches); | ~~~~^~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function ‘raa_bit1’: csrc/raa_acnuc.c:1083:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1083 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_bit0’: csrc/raa_acnuc.c:1093:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1093 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_copylist’: csrc/raa_acnuc.c:1114:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1114 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_zerolist’: csrc/raa_acnuc.c:1124:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1124 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_setliststate’: csrc/raa_acnuc.c:1134:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1134 | char *reponse, str_type[3]; | ^~~~~~~ FL/Fl_SVG_Image.cxx: In function ‘svg_inflate(char const*)’: FL/Fl_SVG_Image.cxx:87:20: warning: pointer ‘out_26’ used after ‘realloc’ [-Wuse-after-free] 87 | p = tmp + (p - out); | ~~^~~~~ FL/Fl_SVG_Image.cxx:86:33: note: call to ‘realloc’ here 86 | char *tmp = (char*)realloc(out, out_size + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx: In function ‘void treerecs_dialog(Fl_Widget*, void*)’: treerecs_draw.cxx:489:20: warning: unused variable ‘recphylowml_window’ [-Wunused-variable] 489 | Fl_Window* recphylowml_window = | ^~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:455:9: warning: unused variable ‘status’ [-Wunused-variable] 455 | int status = | ^~~~~~ treerecs_draw.cxx: In member function ‘virtual void Fl_SVG_Box::draw()’: treerecs_draw.cxx:654:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 654 | while(i < svgtexts_size){ | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)’: treerecs_draw.cxx:738:10: warning: ‘Fl_SVG_Box::zoom’ will be initialized after [-Wreorder] 738 | double zoom; | ^~~~ treerecs_draw.cxx:736:10: warning: ‘double Fl_SVG_Box::svg_shift_x’ [-Wreorder] 736 | double svg_shift_x; | ^~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx:737:10: warning: ‘Fl_SVG_Box::svg_shift_y’ will be initialized after [-Wreorder] 737 | double svg_shift_y; | ^~~~~~~~~~~ treerecs_draw.cxx:733:16: warning: ‘unsigned int Fl_SVG_Box::svgtexts_size’ [-Wreorder] 733 | unsigned int svgtexts_size; | ^~~~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx: In destructor ‘virtual Fl_SVG_Box::~Fl_SVG_Box()’: treerecs_draw.cxx:722:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 722 | for(int i = 0; i < svgtexts_size ; i++) { | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘SVG_View_data::SVG_View_data()’: treerecs_draw.cxx:762:15: warning: ‘SVG_View_data::reconciliation_score_message’ will be initialized after [-Wreorder] 762 | const char* reconciliation_score_message; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:759:9: warning: ‘float SVG_View_data::total_cost’ [-Wreorder] 759 | float total_cost; | ^~~~~~~~~~ treerecs_draw.cxx:764:3: warning: when initialized here [-Wreorder] 764 | SVG_View_data() : | ^~~~~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/parser.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/md5.c csrc/md5.c:200:34: warning: argument 1 of type ‘uint32[4]’ {aka ‘unsigned int[4]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ csrc/md5.c:47:35: note: previously declared as ‘uint32 *’ {aka ‘unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~^~~ csrc/md5.c:200:55: warning: argument 2 of type ‘const uint32[16]’ {aka ‘const unsigned int[16]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ csrc/md5.c:47:54: note: previously declared as ‘const uint32 *’ {aka ‘const unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~~~~~~~^~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/zsockr.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/misc_acnuc.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function ‘dnapars’: csrc/dnapars.c:1685:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/dnapars.c: At top level: csrc/dnapars.c:112:17: warning: ‘names’ defined but not used [-Wunused-variable] 112 | static boolean *names; | ^~~~~ csrc/dnapars.c:108:16: warning: ‘nothing’ defined but not used [-Wunused-variable] 108 | static baseptr nothing; | ^~~~~~~ csrc/dnapars.c:81:6: warning: ‘weightfilename’ defined but not used [-Wunused-variable] 81 | weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/dnapars.c:80:58: warning: ‘intreename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ csrc/dnapars.c:80:35: warning: ‘outfilename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~~ csrc/dnapars.c:80:13: warning: ‘infilename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function ‘protpars’: csrc/protpars.c:2097:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/protpars.c: At top level: csrc/protpars.c:129:12: warning: ‘tmpa’ defined but not used [-Wunused-variable] 129 | static aas tmpa; | ^~~~ csrc/protpars.c:111:21: warning: ‘inseed0’ defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~~ csrc/protpars.c:111:13: warning: ‘inseed’ defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~ csrc/protpars.c:107:94: warning: ‘weightfilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/protpars.c:107:58: warning: ‘intreename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ csrc/protpars.c:107:35: warning: ‘outfilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~ csrc/protpars.c:107:13: warning: ‘infilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/seq.c csrc/seq.c: In function ‘collapsetree’: csrc/seq.c:4015:11: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 4015 | long i, j, index, index2, numd; | ^ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phylip.c csrc/phylip.c: In function ‘scan_eoln’: csrc/phylip.c:161:8: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable] 161 | char ch; | ^~ csrc/phylip.c: In function ‘stringnames_new’: csrc/phylip.c:2980:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 2980 | long len, i; | ^~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/lwl.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/bionj.c csrc/lwl.c: In function ‘prefastlwl’: csrc/lwl.c:412:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 471 | aa[57] = 10;/* tgc */ | ^~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function ‘Warn_And_Exit’: csrc/phyml_util.c:47:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ g++ -o seaview -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz treedraw.cxx:42:16: warning: type ‘struct branche’ violates the C++ One Definition Rule [-Wodr] 42 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:17:16: note: a different type is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field ‘bits’ 21 | int *bits; | ^ addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ use_mase_files.cxx:115:12: warning: ‘isarg’ violates the C++ One Definition Rule [-Wodr] 115 | extern int isarg(int argc, char *argv[], const char *arg); | ^ treedraw.cxx:3368:6: note: return value type mismatch 3368 | bool isarg(int argc, char *argv[], const char *arg) | ^ treedraw.cxx:3368:6: note: type ‘bool’ should match type ‘int’ treedraw.cxx:3368:6: note: ‘isarg’ was previously declared here treedraw.cxx:3368:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used In function ‘show_dot_plot’, inlined from ‘edit_menu_callback’ at seaview.cxx:2557:15: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘_820->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ^ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘_820->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ^ In function ‘really_close’, inlined from ‘exit_button_proc’ at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ^ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9Watpn + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + '[' /builddir/build/BUILD/seaview-5.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/seaview-5.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.0-build + mkdir /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + rm -rf /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/seaview + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/bin + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/share/man/man1 + install -m 755 seaview /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/bin + desktop-file-install --dir /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/seaview.desktop + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/seaview.xpm + install -m 0644 -p seaview.svg /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/seaview.svg + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/appdata/ + install -m 0644 -p seaview.appdata.xml /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/appdata/seaview.appdata.xml + install -m 644 seaview.1 /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/share/man/man1 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.0-10.fc42 --unique-debug-suffix -5.0-10.fc42.aarch64 --unique-debug-src-base seaview-5.0-10.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seaview-5.0-build/seaview find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/seaview-5.0-10.fc42.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/seaview-5.0-build/BUILDROOT Scanned 19 directories and 62 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/seaview-5.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Jg4QSN + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + RPM_EC=0 ++ jobs -p + exit 0 Processing files: seaview-5.0-10.fc42.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iYDtYU + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + cd seaview + DOCDIR=/builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.0-build/seaview/seaview.1.xml /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.0-build/seaview/seaview.html /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + RPM_EC=0 ++ jobs -p + exit 0 Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 5.0-10.fc42 seaview(aarch-64) = 5.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfltk.so.1.3()(64bit) libfltk_images.so.1.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: seaview-debugsource-5.0-10.fc42.aarch64 Provides: seaview-debugsource = 5.0-10.fc42 seaview-debugsource(aarch-64) = 5.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seaview-debuginfo-5.0-10.fc42.aarch64 Provides: debuginfo(build-id) = 122f8d95337b4892d2ce70e3e650aa6fee7ea7a8 seaview-debuginfo = 5.0-10.fc42 seaview-debuginfo(aarch-64) = 5.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seaview-debugsource(aarch-64) = 5.0-10.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/seaview-5.0-build/BUILDROOT Wrote: /builddir/build/RPMS/seaview-5.0-10.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debugsource-5.0-10.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debuginfo-5.0-10.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.UiojVt + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + test -d /builddir/build/BUILD/seaview-5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.0-build + rm -rf /builddir/build/BUILD/seaview-5.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seaview-5.0-10.fc42.src.rpm Finish: build phase for seaview-5.0-10.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1734867746.015580/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/seaview-5.0-10.fc42.src.rpm) Config(child) 0 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "seaview-debugsource", "epoch": null, "version": "5.0", "release": "10.fc42", "arch": "aarch64" }, { "name": "seaview", "epoch": null, "version": "5.0", "release": "10.fc42", "arch": "aarch64" }, { "name": "seaview-debuginfo", "epoch": null, "version": "5.0", "release": "10.fc42", "arch": "aarch64" }, { "name": "seaview", "epoch": null, "version": "5.0", "release": "10.fc42", "arch": "src" } ] } RPMResults finished